Wall clock time and date at job start Tue Mar 31 2020 17:19:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.53000 * 109.46814 * 240.00099 * 2 1 3 5 5 C 1.53005 * 109.47151 * 174.99803 * 4 2 1 6 6 H 1.09002 * 109.47130 * 305.00325 * 5 4 2 7 7 C 1.53002 * 109.47188 * 184.99965 * 5 4 2 8 8 N 1.46507 * 109.46653 * 65.00268 * 5 4 2 9 9 C 1.36934 * 119.99650 * 205.00200 * 8 5 4 10 10 H 1.08000 * 120.00184 * 359.97438 * 9 8 5 11 11 C 1.38813 * 120.00014 * 180.02562 * 9 8 5 12 12 N 1.31621 * 120.00027 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 120.00060 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.47042 * 359.97438 * 13 11 9 15 15 H 1.48503 * 109.47012 * 119.99594 * 13 11 9 16 16 H 1.48497 * 109.46748 * 239.99641 * 13 11 9 17 17 N 1.46497 * 109.47148 * 120.00483 * 2 1 3 18 18 C 1.34775 * 120.00052 * 274.99718 * 17 2 1 19 19 O 1.21285 * 119.99644 * 0.02562 * 18 17 2 20 20 C 1.50696 * 120.00393 * 180.02562 * 18 17 2 21 21 N 1.46906 * 109.47351 * 180.02562 * 20 18 17 22 22 C 1.46901 * 110.99793 * 293.95574 * 21 20 18 23 23 C 1.46898 * 110.99820 * 169.99890 * 21 20 18 24 24 C 1.50706 * 109.46563 * 189.99919 * 23 21 20 25 25 C 1.38237 * 120.00072 * 269.72291 * 24 23 21 26 26 C 1.38233 * 119.99894 * 179.77066 * 25 24 23 27 27 C 1.38236 * 120.00155 * 0.50879 * 26 25 24 28 28 C 1.38235 * 119.99658 * 359.74652 * 27 26 25 29 29 C 1.38234 * 120.00461 * 0.02562 * 28 27 26 30 30 H 1.09000 * 109.46544 * 299.99812 * 1 2 3 31 31 H 1.09001 * 109.46637 * 59.99613 * 1 2 3 32 32 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47394 * 295.00045 * 4 2 1 34 34 H 1.09002 * 109.47026 * 55.00138 * 4 2 1 35 35 H 1.09000 * 109.46867 * 60.00126 * 7 5 4 36 36 H 1.08997 * 109.46738 * 180.02562 * 7 5 4 37 37 H 1.08993 * 109.47271 * 300.00026 * 7 5 4 38 38 H 0.96996 * 120.00074 * 24.99458 * 8 5 4 39 39 H 0.96992 * 120.00338 * 180.02562 * 12 11 9 40 40 H 0.96996 * 120.00294 * 94.99658 * 17 2 1 41 41 H 1.08997 * 109.47055 * 60.00070 * 20 18 17 42 42 H 1.09001 * 109.47156 * 299.99838 * 20 18 17 43 43 H 1.09002 * 109.47401 * 59.99808 * 22 21 20 44 44 H 1.09001 * 109.46874 * 299.99821 * 22 21 20 45 45 H 1.09004 * 109.46970 * 179.97438 * 22 21 20 46 46 H 1.08994 * 109.47410 * 309.99936 * 23 21 20 47 47 H 1.08999 * 109.47216 * 70.00266 * 23 21 20 48 48 H 1.08006 * 119.99586 * 0.02562 * 25 24 23 49 49 H 1.08001 * 119.99865 * 180.23815 * 26 25 24 50 50 H 1.07994 * 120.00441 * 179.72781 * 27 26 25 51 51 H 1.07998 * 120.00212 * 179.97438 * 28 27 26 52 52 H 1.08003 * 120.00362 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5648 -0.6133 -1.3138 6 1 3.8571 0.4358 -1.2679 7 6 4.0644 -1.2250 -2.6242 8 7 4.1537 -1.3343 -0.1825 9 6 5.3943 -0.9857 0.2805 10 1 5.9389 -0.1795 -0.1885 11 6 5.9525 -1.6691 1.3520 12 7 5.2891 -2.6520 1.9233 13 14 7.6453 -1.1941 1.9832 14 1 8.1765 -0.0670 1.1752 15 1 7.5448 -0.7797 3.4057 16 1 8.5603 -2.3581 1.8701 17 7 2.0184 -0.6907 1.1961 18 6 2.1472 -0.0184 2.3571 19 8 1.8583 1.1582 2.4117 20 6 2.6500 -0.7287 3.5874 21 7 2.6988 0.2150 4.7121 22 6 3.7027 1.2616 4.4780 23 6 2.9548 -0.4865 5.9771 24 6 2.7557 0.4653 7.1285 25 6 3.8195 1.2112 7.6006 26 6 3.6357 2.0877 8.6536 27 6 2.3906 2.2107 9.2413 28 6 1.3280 1.4609 8.7726 29 6 1.5106 0.5878 7.7165 30 1 -0.3632 0.5138 0.8900 31 1 -0.3632 0.5139 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.7516 -1.7715 -1.2057 34 1 1.6053 -0.2617 -2.1370 35 1 3.6263 -0.6886 -3.4659 36 1 5.1508 -1.1485 -2.6699 37 1 3.7722 -2.2740 -2.6701 38 1 3.6647 -2.0585 0.2385 39 1 5.6790 -3.1293 2.6723 40 1 2.2490 -1.6318 1.1525 41 1 3.6493 -1.1205 3.3977 42 1 1.9778 -1.5510 3.8324 43 1 3.4498 1.8113 3.5713 44 1 4.6851 0.8036 4.3632 45 1 3.7176 1.9469 5.3256 46 1 2.2641 -1.3240 6.0744 47 1 3.9796 -0.8578 5.9858 48 1 4.7933 1.1120 7.1441 49 1 4.4660 2.6732 9.0200 50 1 2.2480 2.8922 10.0668 51 1 0.3553 1.5566 9.2320 52 1 0.6805 0.0018 7.3506 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001146707308.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:19:27 Heat of formation + Delta-G solvation = -8.166594 kcal Electronic energy + Delta-G solvation = -30011.464948 eV Core-core repulsion = 26203.634751 eV Total energy + Delta-G solvation = -3807.830197 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.94016 -40.20609 -38.52953 -37.38308 -35.68633 -34.02533 -32.75296 -32.05093 -31.77796 -30.29703 -28.77885 -27.95017 -27.55503 -25.57997 -24.24415 -23.37813 -22.31453 -21.71076 -21.61586 -20.88809 -19.11092 -18.08000 -17.49922 -17.20776 -16.83027 -16.69959 -16.30125 -16.09697 -15.72264 -15.58489 -15.44264 -15.16941 -15.00684 -14.35717 -14.27326 -14.17684 -13.93558 -13.68539 -13.58810 -13.39367 -13.32650 -13.23147 -12.91158 -12.83451 -12.78782 -12.71617 -12.61983 -12.49560 -12.22130 -12.12385 -11.90553 -11.82474 -11.68703 -11.60349 -11.38416 -10.90033 -10.54344 -9.79492 -9.74413 -9.70580 -9.28185 -8.81113 -7.87421 -5.08560 0.42878 0.52934 1.39743 1.45433 1.49208 1.92189 2.36053 2.57143 2.86364 3.27981 3.46386 3.79994 3.82454 3.94559 3.99562 4.13444 4.18169 4.20212 4.25407 4.32286 4.36613 4.41482 4.45242 4.54061 4.59127 4.62947 4.70979 4.73110 4.76886 4.82787 4.85646 4.89226 4.94763 5.04230 5.10270 5.11870 5.15596 5.18123 5.18311 5.40231 5.43529 5.57233 5.59545 5.63252 5.64417 5.71767 5.86342 5.92446 6.02639 6.15030 6.35621 6.84250 7.44869 7.56272 8.17960 8.45612 9.33788 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.011608 B = 0.003751 C = 0.003018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2411.591127 B = 7463.719000 C = 9276.099827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.149 3.851 3 H 0.052 0.948 4 C -0.119 4.119 5 C 0.162 3.838 6 H 0.027 0.973 7 C -0.154 4.154 8 N -0.718 5.718 9 C -0.221 4.221 10 H 0.054 0.946 11 C -0.048 4.048 12 N -0.942 5.942 13 Si 0.934 3.066 14 H -0.283 1.283 15 H -0.301 1.301 16 H -0.296 1.296 17 N -0.694 5.694 18 C 0.526 3.474 19 O -0.579 6.579 20 C 0.037 3.963 21 N -0.517 5.517 22 C 0.032 3.968 23 C 0.092 3.908 24 C -0.086 4.086 25 C -0.131 4.131 26 C -0.128 4.128 27 C -0.125 4.125 28 C -0.125 4.125 29 C -0.110 4.110 30 H 0.037 0.963 31 H 0.083 0.917 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.106 0.894 35 H 0.068 0.932 36 H 0.028 0.972 37 H 0.048 0.952 38 H 0.376 0.624 39 H 0.247 0.753 40 H 0.403 0.597 41 H 0.067 0.933 42 H 0.112 0.888 43 H 0.063 0.937 44 H 0.004 0.996 45 H 0.076 0.924 46 H 0.096 0.904 47 H 0.032 0.968 48 H 0.111 0.889 49 H 0.138 0.862 50 H 0.146 0.854 51 H 0.145 0.855 52 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.560 3.722 6.589 12.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.044 3.956 3 H 0.071 0.929 4 C -0.157 4.157 5 C 0.054 3.946 6 H 0.045 0.955 7 C -0.214 4.214 8 N -0.361 5.361 9 C -0.354 4.354 10 H 0.072 0.928 11 C -0.242 4.242 12 N -0.593 5.593 13 Si 0.767 3.233 14 H -0.208 1.208 15 H -0.229 1.229 16 H -0.224 1.224 17 N -0.346 5.346 18 C 0.313 3.687 19 O -0.460 6.460 20 C -0.093 4.093 21 N -0.241 5.241 22 C -0.116 4.116 23 C -0.035 4.035 24 C -0.086 4.086 25 C -0.149 4.149 26 C -0.146 4.146 27 C -0.143 4.143 28 C -0.143 4.143 29 C -0.128 4.128 30 H 0.056 0.944 31 H 0.102 0.898 32 H 0.087 0.913 33 H 0.095 0.905 34 H 0.124 0.876 35 H 0.087 0.913 36 H 0.047 0.953 37 H 0.067 0.933 38 H 0.211 0.789 39 H 0.057 0.943 40 H 0.240 0.760 41 H 0.085 0.915 42 H 0.130 0.870 43 H 0.082 0.918 44 H 0.023 0.977 45 H 0.094 0.906 46 H 0.115 0.885 47 H 0.050 0.950 48 H 0.129 0.871 49 H 0.156 0.844 50 H 0.164 0.836 51 H 0.163 0.837 52 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -11.061 4.852 6.623 13.775 hybrid contribution 2.489 -0.908 0.335 2.670 sum -8.572 3.944 6.958 11.724 Atomic orbital electron populations 1.22087 0.94035 1.02589 1.02106 1.20872 0.94164 0.96072 0.84475 0.92931 1.22115 0.94748 1.01555 0.97317 1.20489 0.92221 0.94306 0.87609 0.95466 1.22272 1.00026 1.00850 0.98221 1.42504 1.17610 1.40121 1.35852 1.19325 0.94356 1.11877 1.09804 0.92790 1.24909 1.00019 0.99447 0.99820 1.69656 1.38195 1.25191 1.26289 0.85658 0.83109 0.76955 0.77568 1.20825 1.22895 1.22409 1.45974 1.65617 1.14239 1.08749 1.20433 0.76343 0.86774 0.85180 1.90555 1.52321 1.17244 1.85837 1.21971 1.02596 0.95055 0.89717 1.61787 1.48657 1.12616 1.01003 1.22379 0.91343 0.95266 1.02635 1.21114 1.00147 0.95255 0.86933 1.19761 0.94542 0.98168 0.96157 1.21210 0.98527 0.97381 0.97814 1.21374 0.98597 0.98507 0.96150 1.21481 0.92645 0.99662 1.00502 1.21465 1.00116 0.96114 0.96624 1.21216 0.96237 0.99182 0.96175 0.94361 0.89847 0.91334 0.90507 0.87550 0.91304 0.95307 0.93284 0.78944 0.94332 0.75957 0.91485 0.86971 0.91844 0.97731 0.90585 0.88526 0.94989 0.87076 0.84427 0.83602 0.83716 0.85257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.76 9.48 71.98 0.68 -3.07 16 2 C 0.15 4.61 2.57 44.99 0.12 4.72 16 3 H 0.05 1.94 7.58 -2.39 -0.02 1.92 16 4 C -0.12 -3.23 4.43 30.60 0.14 -3.10 16 5 C 0.16 5.76 2.89 44.99 0.13 5.89 16 6 H 0.03 1.08 8.08 -2.39 -0.02 1.06 16 7 C -0.15 -4.91 9.49 71.98 0.68 -4.23 16 8 N -0.72 -31.49 3.84 -322.91 -1.24 -32.73 16 9 C -0.22 -11.40 9.93 84.03 0.83 -10.57 16 10 H 0.05 2.89 7.83 -2.91 -0.02 2.87 16 11 C -0.05 -2.54 5.50 84.86 0.47 -2.08 16 12 N -0.94 -49.91 12.78 21.65 0.28 -49.63 16 13 Si 0.93 45.01 29.55 68.60 2.03 47.04 16 14 H -0.28 -13.50 7.11 99.48 0.71 -12.80 16 15 H -0.30 -14.76 7.11 99.48 0.71 -14.05 16 16 H -0.30 -14.36 7.11 99.48 0.71 -13.66 16 17 N -0.69 -24.49 3.80 -442.53 -1.68 -26.17 16 18 C 0.53 21.03 7.52 87.66 0.66 21.69 16 19 O -0.58 -26.20 13.97 -3.04 -0.04 -26.24 16 20 C 0.04 1.40 5.45 85.55 0.47 1.86 16 21 N -0.52 -18.54 4.49 -931.64 -4.18 -22.73 16 22 C 0.03 1.24 8.87 127.69 1.13 2.37 16 23 C 0.09 2.82 5.12 85.56 0.44 3.26 16 24 C -0.09 -2.40 4.88 -19.86 -0.10 -2.49 16 25 C -0.13 -3.50 7.92 22.27 0.18 -3.32 16 26 C -0.13 -2.84 10.05 22.27 0.22 -2.62 16 27 C -0.12 -2.44 10.05 22.27 0.22 -2.22 16 28 C -0.13 -2.56 10.05 22.27 0.22 -2.34 16 29 C -0.11 -2.68 9.70 22.27 0.22 -2.46 16 30 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.08 1.95 8.14 -2.39 -0.02 1.94 16 34 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 35 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.38 16.79 5.70 -92.71 -0.53 16.26 16 39 H 0.25 13.09 8.31 -92.71 -0.77 12.32 16 40 H 0.40 14.29 6.51 -92.71 -0.60 13.69 16 41 H 0.07 2.95 7.84 -2.39 -0.02 2.93 16 42 H 0.11 3.60 7.93 -2.39 -0.02 3.58 16 43 H 0.06 2.78 5.88 -2.39 -0.01 2.76 16 44 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 45 H 0.08 2.66 5.91 -2.38 -0.01 2.65 16 46 H 0.10 2.58 7.87 -2.39 -0.02 2.56 16 47 H 0.03 1.04 8.06 -2.39 -0.02 1.02 16 48 H 0.11 3.04 8.00 -2.91 -0.02 3.01 16 49 H 0.14 2.41 8.06 -2.91 -0.02 2.39 16 50 H 0.15 1.97 8.06 -2.91 -0.02 1.95 16 51 H 0.15 2.14 8.06 -2.91 -0.02 2.12 16 52 H 0.13 2.86 8.06 -2.91 -0.02 2.83 16 Total: -1.00 -62.58 414.68 1.63 -60.95 By element: Atomic # 1 Polarization: 48.45 SS G_CDS: -0.24 Total: 48.22 kcal Atomic # 6 Polarization: -5.41 SS G_CDS: 6.71 Total: 1.30 kcal Atomic # 7 Polarization: -124.43 SS G_CDS: -6.83 Total: -131.26 kcal Atomic # 8 Polarization: -26.20 SS G_CDS: -0.04 Total: -26.24 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -62.58 1.63 -60.95 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146707308.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.788 kcal (2) G-P(sol) polarization free energy of solvation -62.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds