Wall clock time and date at job start Tue Mar 31 2020 18:12:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46508 * 109.46807 * 2 1 4 4 C 1.46496 * 120.00098 * 270.00242 * 3 2 1 5 5 C 1.39049 * 119.99921 * 90.00326 * 3 2 1 6 6 C 1.39218 * 119.93076 * 180.02562 * 5 3 2 7 7 C 1.37611 * 120.06967 * 180.02562 * 6 5 3 8 8 C 1.39799 * 119.92785 * 359.96841 * 7 6 5 9 9 C 1.47526 * 120.06570 * 179.97438 * 8 7 6 10 10 O 1.21594 * 119.99642 * 0.02562 * 9 8 7 11 11 N 1.34778 * 119.99877 * 180.02562 * 9 8 7 12 12 C 1.46495 * 119.99718 * 180.02562 * 11 9 8 13 13 H 1.08994 * 109.47210 * 324.99916 * 12 11 9 14 14 C 1.52999 * 109.47389 * 85.00140 * 12 11 9 15 15 C 1.53006 * 109.46696 * 204.99517 * 12 11 9 16 16 C 1.52997 * 109.46841 * 65.00499 * 15 12 11 17 17 H 1.09005 * 109.47159 * 54.99606 * 16 15 12 18 18 C 1.52999 * 109.47264 * 174.99605 * 16 15 12 19 19 N 1.46498 * 109.47167 * 294.99436 * 16 15 12 20 20 C 1.36935 * 120.00239 * 154.99975 * 19 16 15 21 21 H 1.08004 * 120.00069 * 0.02562 * 20 19 16 22 22 C 1.38811 * 120.00368 * 180.02562 * 20 19 16 23 23 N 1.31624 * 119.99540 * 359.72375 * 22 20 19 24 24 Si 1.86800 * 120.00451 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.46758 * 269.72270 * 24 22 20 26 26 H 1.48499 * 109.47026 * 29.72118 * 24 22 20 27 27 H 1.48496 * 109.47474 * 149.72153 * 24 22 20 28 28 C 1.39793 * 119.86200 * 0.25626 * 8 7 6 29 29 C 1.37605 * 119.93173 * 359.51156 * 28 8 7 30 30 H 1.08998 * 109.47696 * 299.99441 * 1 2 3 31 31 H 1.08999 * 109.47621 * 60.00067 * 1 2 3 32 32 H 1.09010 * 109.46688 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47266 * 240.00512 * 2 1 3 34 34 H 1.08999 * 109.47621 * 119.99933 * 2 1 3 35 35 H 1.09006 * 109.47156 * 270.00310 * 4 3 2 36 36 H 1.09001 * 109.46987 * 29.99759 * 4 3 2 37 37 H 1.08997 * 109.47627 * 149.99766 * 4 3 2 38 38 H 1.08001 * 119.96715 * 0.02562 * 6 5 3 39 39 H 1.08000 * 120.03624 * 179.97438 * 7 6 5 40 40 H 0.96997 * 119.99976 * 359.97438 * 11 9 8 41 41 H 1.09007 * 109.47428 * 59.99518 * 14 12 11 42 42 H 1.09001 * 109.47632 * 179.97438 * 14 12 11 43 43 H 1.09000 * 109.47086 * 299.99744 * 14 12 11 44 44 H 1.08996 * 109.47489 * 304.99916 * 15 12 11 45 45 H 1.09001 * 109.46720 * 184.99882 * 15 12 11 46 46 H 1.09005 * 109.47033 * 59.99923 * 18 16 15 47 47 H 1.08994 * 109.47214 * 179.97438 * 18 16 15 48 48 H 1.08994 * 109.47102 * 299.99987 * 18 16 15 49 49 H 0.97004 * 119.99747 * 335.00715 * 19 16 15 50 50 H 0.97000 * 120.00481 * 0.27542 * 23 22 20 51 51 H 1.08001 * 120.02814 * 179.74301 * 28 8 7 52 52 H 1.08002 * 119.96372 * 180.20330 * 29 28 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2623 2.0720 -1.2687 5 6 2.2500 2.0368 1.2042 6 6 2.7135 3.3495 1.2025 7 6 2.9443 4.0008 2.3926 8 6 2.7123 3.3429 3.6041 9 6 2.9592 4.0379 4.8817 10 8 3.3646 5.1843 4.8817 11 7 2.7356 3.4022 6.0489 12 6 2.9803 4.0927 7.3176 13 1 3.8393 4.7551 7.2109 14 6 1.7468 4.9142 7.6974 15 6 3.2636 3.0622 8.4126 16 6 4.5664 2.3255 8.0948 17 1 5.3700 3.0498 7.9610 18 6 4.9150 1.3845 9.2497 19 7 4.4000 1.5478 6.8645 20 6 5.4924 1.2299 6.1024 21 1 6.4768 1.5521 6.4086 22 6 5.3348 0.4934 4.9364 23 7 4.1358 0.0961 4.5661 24 14 6.8250 0.0591 3.8972 25 1 7.0545 1.1264 2.8905 26 1 8.0195 -0.0622 4.7711 27 1 6.5858 -1.2321 3.2039 28 6 2.2513 2.0231 3.6024 29 6 2.0179 1.3790 2.4090 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0278 -0.0005 33 1 1.8933 -0.5138 -0.8901 34 1 1.8933 -0.5138 0.8899 35 1 3.2918 1.9007 -1.5834 36 1 1.5815 1.6878 -2.0283 37 1 2.0952 3.1412 -1.1384 38 1 2.8920 3.8574 0.2663 39 1 3.3042 5.0190 2.3907 40 1 2.4119 2.4879 6.0489 41 1 0.8877 4.2518 7.8041 42 1 1.9286 5.4276 8.6416 43 1 1.5448 5.6483 6.9174 44 1 2.4432 2.3461 8.4587 45 1 3.3578 3.5691 9.3729 46 1 4.1114 0.6603 9.3835 47 1 5.8428 0.8594 9.0231 48 1 5.0388 1.9631 10.1650 49 1 3.5160 1.2582 6.5896 50 1 3.3620 0.3213 5.1058 51 1 2.0752 1.5109 4.5367 52 1 1.6586 0.3604 2.4071 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001146733046.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:06 Heat of formation + Delta-G solvation = 13.366787 kcal Electronic energy + Delta-G solvation = -30629.271706 eV Core-core repulsion = 26822.375267 eV Total energy + Delta-G solvation = -3806.896439 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -39.69479 -38.69598 -36.86149 -35.84192 -34.20572 -32.57518 -31.60947 -30.64624 -30.18488 -28.97423 -28.12025 -26.35026 -26.02401 -23.65725 -23.47007 -21.69528 -21.62230 -20.32486 -20.24176 -19.32548 -17.59989 -17.28917 -16.39383 -15.93722 -15.43836 -14.98692 -14.57714 -14.46147 -14.18188 -14.10981 -13.83344 -13.51949 -13.36142 -13.14311 -12.96730 -12.88947 -12.78823 -12.44354 -12.14830 -12.07076 -12.04183 -11.83792 -11.70712 -11.67753 -11.55730 -11.47127 -11.03161 -10.96298 -10.69835 -10.43405 -10.36709 -10.18287 -10.07072 -9.97270 -9.39350 -9.11213 -9.09664 -8.89774 -8.29661 -8.25593 -6.93853 -6.85230 -6.02390 -2.99987 1.77502 2.16367 3.33139 3.55589 3.61171 3.68903 3.71556 3.95587 4.69126 4.71538 4.98424 5.07699 5.11216 5.23340 5.39530 5.41687 5.44317 5.47274 5.53874 5.59291 5.63580 5.65914 5.69958 5.71278 5.78138 5.86785 5.92100 5.96632 5.99745 6.02518 6.08135 6.13326 6.21998 6.23577 6.24563 6.37029 6.42015 6.50766 6.58574 6.61910 6.76428 6.84227 6.99217 7.03673 7.16621 7.24418 7.35792 7.56594 7.87640 7.88290 8.30239 8.78720 9.05700 9.25735 10.10308 10.26533 11.41866 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.010822 B = 0.004652 C = 0.003795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2586.593574 B = 6017.736833 C = 7376.800190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.116 3.884 3 N -0.630 5.630 4 C 0.095 3.905 5 C 0.232 3.768 6 C -0.222 4.222 7 C -0.018 4.018 8 C -0.195 4.195 9 C 0.576 3.424 10 O -0.570 6.570 11 N -0.700 5.700 12 C 0.151 3.849 13 H 0.083 0.917 14 C -0.161 4.161 15 C -0.135 4.135 16 C 0.175 3.825 17 H 0.048 0.952 18 C -0.162 4.162 19 N -0.726 5.726 20 C -0.317 4.317 21 H 0.060 0.940 22 C -0.038 4.038 23 N -0.930 5.930 24 Si 1.073 2.927 25 H -0.298 1.298 26 H -0.299 1.299 27 H -0.291 1.291 28 C 0.017 3.983 29 C -0.180 4.180 30 H 0.060 0.940 31 H 0.051 0.949 32 H 0.061 0.939 33 H 0.068 0.932 34 H 0.085 0.915 35 H 0.045 0.955 36 H 0.060 0.940 37 H 0.067 0.933 38 H 0.117 0.883 39 H 0.123 0.877 40 H 0.396 0.604 41 H 0.052 0.948 42 H 0.059 0.941 43 H 0.058 0.942 44 H 0.061 0.939 45 H 0.074 0.926 46 H 0.043 0.957 47 H 0.052 0.948 48 H 0.036 0.964 49 H 0.359 0.641 50 H 0.247 0.753 51 H 0.120 0.880 52 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.836 2.297 -4.467 10.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.007 4.007 3 N -0.342 5.342 4 C -0.049 4.049 5 C 0.131 3.869 6 C -0.244 4.244 7 C -0.038 4.038 8 C -0.200 4.200 9 C 0.366 3.634 10 O -0.451 6.451 11 N -0.352 5.352 12 C 0.046 3.954 13 H 0.101 0.899 14 C -0.220 4.220 15 C -0.173 4.173 16 C 0.065 3.935 17 H 0.066 0.934 18 C -0.223 4.223 19 N -0.370 5.370 20 C -0.448 4.448 21 H 0.078 0.922 22 C -0.235 4.235 23 N -0.577 5.577 24 Si 0.906 3.094 25 H -0.226 1.226 26 H -0.226 1.226 27 H -0.217 1.217 28 C -0.003 4.003 29 C -0.203 4.203 30 H 0.079 0.921 31 H 0.070 0.930 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.103 0.897 35 H 0.064 0.936 36 H 0.079 0.921 37 H 0.086 0.914 38 H 0.135 0.865 39 H 0.141 0.859 40 H 0.233 0.767 41 H 0.071 0.929 42 H 0.078 0.922 43 H 0.077 0.923 44 H 0.080 0.920 45 H 0.092 0.908 46 H 0.062 0.938 47 H 0.072 0.928 48 H 0.055 0.945 49 H 0.193 0.807 50 H 0.060 0.940 51 H 0.137 0.863 52 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -7.826 2.275 -5.931 10.079 hybrid contribution -0.541 0.050 1.322 1.429 sum -8.366 2.325 -4.609 9.831 Atomic orbital electron populations 1.22215 0.96718 1.01693 1.02234 1.21410 0.93665 0.82555 1.03079 1.46284 1.71605 1.13148 1.03122 1.21573 1.00255 0.97771 0.85272 1.17944 0.92152 0.91193 0.85661 1.20407 1.11625 0.94372 0.97994 1.20787 0.93412 0.98921 0.90649 1.19562 1.11451 0.95954 0.93009 1.18090 0.76030 0.85402 0.83863 1.90652 1.47998 1.18457 1.88013 1.45847 1.67589 1.16935 1.04846 1.20765 0.97588 0.93760 0.83318 0.89936 1.22206 0.98302 1.00217 1.01270 1.22228 0.99462 0.97947 0.97691 1.20205 0.94205 0.92076 0.86977 0.93365 1.22404 1.01584 1.00232 0.98038 1.42436 1.06332 1.64331 1.23876 1.19984 0.87915 1.31695 1.05185 0.92227 1.25404 1.02977 0.98573 0.96578 1.71020 0.97509 1.48671 1.40460 0.83297 0.74116 0.76307 0.75698 1.22579 1.22635 1.21709 1.20864 0.90455 0.91318 0.97687 1.20399 1.09390 1.00044 0.90424 0.92116 0.93014 0.91990 0.91322 0.89717 0.93638 0.92082 0.91406 0.86478 0.85880 0.76675 0.92938 0.92228 0.92319 0.92014 0.90788 0.93809 0.92845 0.94524 0.80690 0.94005 0.86265 0.85977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.77 10.24 37.15 0.38 -1.39 16 2 C 0.12 1.42 5.87 -4.04 -0.02 1.39 16 3 N -0.63 -8.83 2.99 -179.62 -0.54 -9.37 16 4 C 0.09 1.04 10.18 59.84 0.61 1.65 16 5 C 0.23 3.98 6.55 -83.86 -0.55 3.43 16 6 C -0.22 -3.81 9.18 -39.45 -0.36 -4.17 16 7 C -0.02 -0.35 9.58 -39.23 -0.38 -0.72 16 8 C -0.19 -4.04 5.88 -104.95 -0.62 -4.65 16 9 C 0.58 12.44 7.73 -12.47 -0.10 12.35 16 10 O -0.57 -13.56 16.00 5.28 0.08 -13.48 16 11 N -0.70 -13.33 3.75 -54.85 -0.21 -13.53 16 12 C 0.15 2.57 2.57 -67.93 -0.17 2.39 16 13 H 0.08 1.61 7.58 -51.93 -0.39 1.21 16 14 C -0.16 -2.30 9.48 37.16 0.35 -1.95 16 15 C -0.13 -2.10 4.43 -26.73 -0.12 -2.22 16 16 C 0.18 3.37 2.89 -67.93 -0.20 3.18 16 17 H 0.05 1.02 8.08 -51.93 -0.42 0.60 16 18 C -0.16 -2.87 9.49 37.16 0.35 -2.52 16 19 N -0.73 -16.57 3.84 -53.43 -0.21 -16.78 16 20 C -0.32 -8.44 9.93 -15.06 -0.15 -8.59 16 21 H 0.06 1.66 7.83 -52.48 -0.41 1.25 16 22 C -0.04 -1.02 5.50 -17.43 -0.10 -1.11 16 23 N -0.93 -24.87 12.24 55.49 0.68 -24.19 16 24 Si 1.07 26.12 29.92 -169.99 -5.09 21.03 16 25 H -0.30 -7.38 7.11 56.52 0.40 -6.98 16 26 H -0.30 -7.05 7.11 56.52 0.40 -6.65 16 27 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 28 C 0.02 0.34 7.81 -39.23 -0.31 0.03 16 29 C -0.18 -3.34 9.18 -39.45 -0.36 -3.70 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16 33 H 0.07 0.72 8.07 -51.93 -0.42 0.30 16 34 H 0.08 1.18 6.17 -51.93 -0.32 0.86 16 35 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.06 0.53 8.07 -51.93 -0.42 0.11 16 37 H 0.07 0.71 6.17 -51.93 -0.32 0.39 16 38 H 0.12 1.70 6.11 -52.49 -0.32 1.38 16 39 H 0.12 2.32 7.64 -52.49 -0.40 1.91 16 40 H 0.40 7.42 4.53 -40.82 -0.18 7.24 16 41 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 45 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 46 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 47 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 48 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 49 H 0.36 8.14 4.54 -40.82 -0.19 7.96 16 50 H 0.25 6.35 4.76 -40.82 -0.19 6.15 16 51 H 0.12 2.37 4.70 -52.49 -0.25 2.13 16 52 H 0.12 2.15 6.11 -52.49 -0.32 1.83 16 LS Contribution 404.59 15.07 6.10 6.10 Total: -1.00 -30.77 404.59 -9.33 -40.10 By element: Atomic # 1 Polarization: 25.16 SS G_CDS: -8.43 Total: 16.74 kcal Atomic # 6 Polarization: -4.88 SS G_CDS: -1.73 Total: -6.61 kcal Atomic # 7 Polarization: -63.60 SS G_CDS: -0.27 Total: -63.87 kcal Atomic # 8 Polarization: -13.56 SS G_CDS: 0.08 Total: -13.48 kcal Atomic # 14 Polarization: 26.12 SS G_CDS: -5.09 Total: 21.03 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -30.77 -9.33 -40.10 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146733046.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.464 kcal (2) G-P(sol) polarization free energy of solvation -30.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.098 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds