Wall clock time and date at job start Tue Mar 31 2020 18:12:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46508 * 109.46807 * 2 1 4 4 C 1.46496 * 120.00098 * 270.00242 * 3 2 1 5 5 C 1.39049 * 119.99921 * 90.00326 * 3 2 1 6 6 C 1.39218 * 119.93076 * 180.02562 * 5 3 2 7 7 C 1.37611 * 120.06967 * 180.02562 * 6 5 3 8 8 C 1.39799 * 119.92785 * 359.96841 * 7 6 5 9 9 C 1.47526 * 120.06570 * 179.97438 * 8 7 6 10 10 O 1.21594 * 119.99642 * 0.02562 * 9 8 7 11 11 N 1.34778 * 119.99877 * 180.02562 * 9 8 7 12 12 C 1.46495 * 119.99718 * 180.02562 * 11 9 8 13 13 H 1.08994 * 109.47210 * 324.99916 * 12 11 9 14 14 C 1.52999 * 109.47389 * 85.00140 * 12 11 9 15 15 C 1.53006 * 109.46696 * 204.99517 * 12 11 9 16 16 C 1.52997 * 109.46841 * 65.00499 * 15 12 11 17 17 H 1.09005 * 109.47159 * 54.99606 * 16 15 12 18 18 C 1.52999 * 109.47264 * 174.99605 * 16 15 12 19 19 N 1.46498 * 109.47167 * 294.99436 * 16 15 12 20 20 C 1.36935 * 120.00239 * 154.99975 * 19 16 15 21 21 H 1.08004 * 120.00069 * 0.02562 * 20 19 16 22 22 C 1.38811 * 120.00368 * 180.02562 * 20 19 16 23 23 N 1.31624 * 119.99540 * 359.72375 * 22 20 19 24 24 Si 1.86800 * 120.00451 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.46758 * 269.72270 * 24 22 20 26 26 H 1.48499 * 109.47026 * 29.72118 * 24 22 20 27 27 H 1.48496 * 109.47474 * 149.72153 * 24 22 20 28 28 C 1.39793 * 119.86200 * 0.25626 * 8 7 6 29 29 C 1.37605 * 119.93173 * 359.51156 * 28 8 7 30 30 H 1.08998 * 109.47696 * 299.99441 * 1 2 3 31 31 H 1.08999 * 109.47621 * 60.00067 * 1 2 3 32 32 H 1.09010 * 109.46688 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47266 * 240.00512 * 2 1 3 34 34 H 1.08999 * 109.47621 * 119.99933 * 2 1 3 35 35 H 1.09006 * 109.47156 * 270.00310 * 4 3 2 36 36 H 1.09001 * 109.46987 * 29.99759 * 4 3 2 37 37 H 1.08997 * 109.47627 * 149.99766 * 4 3 2 38 38 H 1.08001 * 119.96715 * 0.02562 * 6 5 3 39 39 H 1.08000 * 120.03624 * 179.97438 * 7 6 5 40 40 H 0.96997 * 119.99976 * 359.97438 * 11 9 8 41 41 H 1.09007 * 109.47428 * 59.99518 * 14 12 11 42 42 H 1.09001 * 109.47632 * 179.97438 * 14 12 11 43 43 H 1.09000 * 109.47086 * 299.99744 * 14 12 11 44 44 H 1.08996 * 109.47489 * 304.99916 * 15 12 11 45 45 H 1.09001 * 109.46720 * 184.99882 * 15 12 11 46 46 H 1.09005 * 109.47033 * 59.99923 * 18 16 15 47 47 H 1.08994 * 109.47214 * 179.97438 * 18 16 15 48 48 H 1.08994 * 109.47102 * 299.99987 * 18 16 15 49 49 H 0.97004 * 119.99747 * 335.00715 * 19 16 15 50 50 H 0.97000 * 120.00481 * 0.27542 * 23 22 20 51 51 H 1.08001 * 120.02814 * 179.74301 * 28 8 7 52 52 H 1.08002 * 119.96372 * 180.20330 * 29 28 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2623 2.0720 -1.2687 5 6 2.2500 2.0368 1.2042 6 6 2.7135 3.3495 1.2025 7 6 2.9443 4.0008 2.3926 8 6 2.7123 3.3429 3.6041 9 6 2.9592 4.0379 4.8817 10 8 3.3646 5.1843 4.8817 11 7 2.7356 3.4022 6.0489 12 6 2.9803 4.0927 7.3176 13 1 3.8393 4.7551 7.2109 14 6 1.7468 4.9142 7.6974 15 6 3.2636 3.0622 8.4126 16 6 4.5664 2.3255 8.0948 17 1 5.3700 3.0498 7.9610 18 6 4.9150 1.3845 9.2497 19 7 4.4000 1.5478 6.8645 20 6 5.4924 1.2299 6.1024 21 1 6.4768 1.5521 6.4086 22 6 5.3348 0.4934 4.9364 23 7 4.1358 0.0961 4.5661 24 14 6.8250 0.0591 3.8972 25 1 7.0545 1.1264 2.8905 26 1 8.0195 -0.0622 4.7711 27 1 6.5858 -1.2321 3.2039 28 6 2.2513 2.0231 3.6024 29 6 2.0179 1.3790 2.4090 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0278 -0.0005 33 1 1.8933 -0.5138 -0.8901 34 1 1.8933 -0.5138 0.8899 35 1 3.2918 1.9007 -1.5834 36 1 1.5815 1.6878 -2.0283 37 1 2.0952 3.1412 -1.1384 38 1 2.8920 3.8574 0.2663 39 1 3.3042 5.0190 2.3907 40 1 2.4119 2.4879 6.0489 41 1 0.8877 4.2518 7.8041 42 1 1.9286 5.4276 8.6416 43 1 1.5448 5.6483 6.9174 44 1 2.4432 2.3461 8.4587 45 1 3.3578 3.5691 9.3729 46 1 4.1114 0.6603 9.3835 47 1 5.8428 0.8594 9.0231 48 1 5.0388 1.9631 10.1650 49 1 3.5160 1.2582 6.5896 50 1 3.3620 0.3213 5.1058 51 1 2.0752 1.5109 4.5367 52 1 1.6586 0.3604 2.4071 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001146733046.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:05 Heat of formation + Delta-G solvation = -2.856686 kcal Electronic energy + Delta-G solvation = -30629.975209 eV Core-core repulsion = 26822.375267 eV Total energy + Delta-G solvation = -3807.599942 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.19154 -40.06953 -38.41544 -37.16847 -35.89508 -34.28447 -32.86050 -32.05470 -31.53449 -30.37602 -29.73710 -27.66873 -27.11755 -25.43075 -24.90010 -23.10077 -22.91884 -21.77323 -21.69615 -20.81748 -19.31738 -18.92161 -17.74465 -17.34711 -16.79950 -16.54924 -16.00582 -15.81477 -15.73430 -15.57146 -15.43677 -15.12641 -14.68391 -14.46125 -14.40434 -14.33623 -14.03912 -13.56189 -13.44770 -13.33545 -13.23120 -13.19379 -13.03437 -12.88819 -12.85310 -12.73963 -12.60280 -12.50740 -12.17095 -11.96522 -11.88846 -11.78066 -11.60911 -11.51293 -11.06115 -10.85832 -10.75914 -10.66169 -9.86817 -9.73989 -8.81640 -8.15096 -8.10645 -5.04237 0.28059 0.70909 1.56214 1.64329 1.76517 2.11787 2.24226 2.47786 2.74125 3.18928 3.58985 3.71605 3.87812 3.93002 4.03037 4.09624 4.14381 4.18991 4.30458 4.33901 4.39394 4.49731 4.51166 4.59328 4.62954 4.64329 4.74481 4.77116 4.79751 4.81784 4.86584 4.92200 4.94678 5.00611 5.02440 5.04830 5.08793 5.21254 5.31456 5.33371 5.34456 5.40540 5.54763 5.56940 5.69045 5.75987 5.79042 5.93448 6.41853 6.58211 6.72084 6.74735 7.30904 7.44366 8.16182 8.30186 9.34654 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.010822 B = 0.004652 C = 0.003795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2586.593574 B = 6017.736833 C = 7376.800190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.110 3.890 3 N -0.628 5.628 4 C 0.087 3.913 5 C 0.238 3.762 6 C -0.221 4.221 7 C -0.030 4.030 8 C -0.226 4.226 9 C 0.566 3.434 10 O -0.604 6.604 11 N -0.693 5.693 12 C 0.145 3.855 13 H 0.052 0.948 14 C -0.150 4.150 15 C -0.120 4.120 16 C 0.167 3.833 17 H 0.023 0.977 18 C -0.151 4.151 19 N -0.729 5.729 20 C -0.325 4.325 21 H 0.039 0.961 22 C -0.076 4.076 23 N -0.935 5.935 24 Si 1.106 2.894 25 H -0.306 1.306 26 H -0.290 1.290 27 H -0.289 1.289 28 C 0.013 3.987 29 C -0.194 4.194 30 H 0.042 0.958 31 H 0.063 0.937 32 H 0.078 0.922 33 H 0.092 0.908 34 H 0.063 0.937 35 H 0.049 0.951 36 H 0.090 0.910 37 H 0.073 0.927 38 H 0.146 0.854 39 H 0.120 0.880 40 H 0.397 0.603 41 H 0.068 0.932 42 H 0.087 0.913 43 H 0.037 0.963 44 H 0.076 0.924 45 H 0.110 0.890 46 H 0.048 0.952 47 H 0.026 0.974 48 H 0.070 0.930 49 H 0.359 0.641 50 H 0.249 0.751 51 H 0.111 0.889 52 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.125 1.679 -5.019 11.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.013 4.013 3 N -0.337 5.337 4 C -0.056 4.056 5 C 0.133 3.867 6 C -0.243 4.243 7 C -0.050 4.050 8 C -0.231 4.231 9 C 0.357 3.643 10 O -0.489 6.489 11 N -0.344 5.344 12 C 0.041 3.959 13 H 0.070 0.930 14 C -0.208 4.208 15 C -0.158 4.158 16 C 0.059 3.941 17 H 0.041 0.959 18 C -0.211 4.211 19 N -0.374 5.374 20 C -0.457 4.457 21 H 0.058 0.942 22 C -0.272 4.272 23 N -0.582 5.582 24 Si 0.937 3.063 25 H -0.234 1.234 26 H -0.217 1.217 27 H -0.216 1.216 28 C -0.007 4.007 29 C -0.216 4.216 30 H 0.061 0.939 31 H 0.083 0.917 32 H 0.097 0.903 33 H 0.111 0.889 34 H 0.081 0.919 35 H 0.067 0.933 36 H 0.108 0.892 37 H 0.092 0.908 38 H 0.164 0.836 39 H 0.138 0.862 40 H 0.234 0.766 41 H 0.087 0.913 42 H 0.106 0.894 43 H 0.057 0.943 44 H 0.095 0.905 45 H 0.128 0.872 46 H 0.067 0.933 47 H 0.045 0.955 48 H 0.089 0.911 49 H 0.193 0.807 50 H 0.061 0.939 51 H 0.129 0.871 52 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -9.139 1.630 -6.469 11.315 hybrid contribution -0.150 0.214 1.402 1.426 sum -9.289 1.844 -5.067 10.741 Atomic orbital electron populations 1.22127 0.95111 1.02773 1.01953 1.21580 0.94937 0.81540 1.03199 1.46614 1.70244 1.13790 1.03059 1.21827 1.01308 0.98113 0.84306 1.18053 0.90823 0.91213 0.86595 1.20660 1.10831 0.94474 0.98334 1.20921 0.93810 0.99030 0.91190 1.19658 1.13603 0.96649 0.93179 1.18392 0.75793 0.85189 0.84913 1.90608 1.49930 1.19785 1.88556 1.45879 1.66598 1.16823 1.05091 1.20938 0.97998 0.94028 0.82958 0.92952 1.22098 0.97237 0.99669 1.01833 1.22144 0.97584 0.97567 0.98530 1.20400 0.95600 0.91833 0.86265 0.95919 1.22244 1.00331 1.00011 0.98536 1.42436 1.05292 1.64836 1.24847 1.19991 0.88219 1.31716 1.05820 0.94245 1.26155 1.04305 0.99178 0.97554 1.71034 0.97562 1.48984 1.40635 0.82835 0.73047 0.75682 0.74776 1.23447 1.21661 1.21572 1.20782 0.90870 0.91073 0.97950 1.20504 1.10007 1.00342 0.90730 0.93850 0.91745 0.90295 0.88925 0.91869 0.93273 0.89171 0.90808 0.83631 0.86205 0.76550 0.91268 0.89400 0.94335 0.90535 0.87175 0.93266 0.95455 0.91138 0.80675 0.93915 0.87111 0.85580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.98 10.24 71.98 0.74 -2.24 16 2 C 0.11 2.45 5.87 86.38 0.51 2.96 16 3 N -0.63 -16.27 2.99 -722.21 -2.16 -18.43 16 4 C 0.09 1.62 10.18 127.77 1.30 2.92 16 5 C 0.24 7.97 6.55 38.47 0.25 8.23 16 6 C -0.22 -7.45 9.18 22.36 0.21 -7.25 16 7 C -0.03 -1.18 9.58 22.50 0.22 -0.96 16 8 C -0.23 -9.72 5.88 -20.07 -0.12 -9.84 16 9 C 0.57 25.58 7.73 86.69 0.67 26.25 16 10 O -0.60 -30.24 16.00 -4.01 -0.06 -30.30 16 11 N -0.69 -27.12 3.75 -445.71 -1.67 -28.79 16 12 C 0.15 4.93 2.57 44.99 0.12 5.04 16 13 H 0.05 2.10 7.58 -2.39 -0.02 2.08 16 14 C -0.15 -4.07 9.48 71.98 0.68 -3.39 16 15 C -0.12 -3.53 4.43 30.60 0.14 -3.39 16 16 C 0.17 6.41 2.89 44.99 0.13 6.54 16 17 H 0.02 0.98 8.08 -2.38 -0.02 0.96 16 18 C -0.15 -5.14 9.49 71.98 0.68 -4.46 16 19 N -0.73 -33.88 3.84 -322.94 -1.24 -35.12 16 20 C -0.33 -17.80 9.93 84.03 0.83 -16.96 16 21 H 0.04 2.27 7.83 -2.91 -0.02 2.25 16 22 C -0.08 -4.18 5.50 84.86 0.47 -3.72 16 23 N -0.93 -50.65 12.24 21.65 0.26 -50.38 16 24 Si 1.11 53.58 29.92 68.60 2.05 55.63 16 25 H -0.31 -15.13 7.11 99.48 0.71 -14.43 16 26 H -0.29 -13.46 7.11 99.48 0.71 -12.76 16 27 H -0.29 -13.86 7.11 99.48 0.71 -13.16 16 28 C 0.01 0.55 7.81 22.50 0.18 0.73 16 29 C -0.19 -7.22 9.18 22.36 0.21 -7.02 16 30 H 0.04 0.95 8.14 -2.39 -0.02 0.94 16 31 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.08 1.20 8.14 -2.38 -0.02 1.18 16 33 H 0.09 1.64 8.07 -2.38 -0.02 1.62 16 34 H 0.06 1.70 6.17 -2.39 -0.01 1.68 16 35 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16 36 H 0.09 1.20 8.07 -2.39 -0.02 1.18 16 37 H 0.07 1.31 6.17 -2.39 -0.01 1.30 16 38 H 0.15 3.96 6.11 -2.91 -0.02 3.94 16 39 H 0.12 4.70 7.64 -2.91 -0.02 4.68 16 40 H 0.40 15.26 4.53 -92.71 -0.42 14.84 16 41 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 42 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 43 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 44 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 45 H 0.11 2.50 8.14 -2.39 -0.02 2.48 16 46 H 0.05 1.61 8.14 -2.38 -0.02 1.59 16 47 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 48 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 49 H 0.36 16.52 4.54 -92.71 -0.42 16.10 16 50 H 0.25 12.99 4.76 -92.71 -0.44 12.55 16 51 H 0.11 4.59 4.70 -2.91 -0.01 4.58 16 52 H 0.13 4.50 6.11 -2.91 -0.02 4.49 16 Total: -1.00 -69.07 404.59 4.79 -64.28 By element: Atomic # 1 Polarization: 49.27 SS G_CDS: 0.41 Total: 49.67 kcal Atomic # 6 Polarization: -13.76 SS G_CDS: 7.20 Total: -6.57 kcal Atomic # 7 Polarization: -127.92 SS G_CDS: -4.81 Total: -132.72 kcal Atomic # 8 Polarization: -30.24 SS G_CDS: -0.06 Total: -30.30 kcal Atomic # 14 Polarization: 53.58 SS G_CDS: 2.05 Total: 55.63 kcal Total: -69.07 4.79 -64.28 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146733046.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.428 kcal (2) G-P(sol) polarization free energy of solvation -69.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds