Wall clock time and date at job start Tue Mar 31 2020 18:32:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46503 * 109.46900 * 2 1 4 4 C 1.36932 * 120.00210 * 274.57886 * 3 2 1 5 5 H 1.08004 * 119.99985 * 140.38579 * 4 3 2 6 6 C 1.38818 * 119.99963 * 320.38690 * 4 3 2 7 7 N 1.31615 * 119.99876 * 156.48947 * 6 4 3 8 8 Si 1.86796 * 120.00015 * 336.49092 * 6 4 3 9 9 H 1.48498 * 109.47557 * 95.30341 * 8 6 4 10 10 H 1.48499 * 109.47067 * 215.30404 * 8 6 4 11 11 H 1.48499 * 109.47224 * 335.30105 * 8 6 4 12 12 C 1.46497 * 119.99521 * 94.57902 * 3 2 1 13 13 H 1.09000 * 109.46915 * 179.97438 * 12 3 2 14 14 C 1.53004 * 109.47246 * 60.00410 * 12 3 2 15 15 C 1.52996 * 109.47255 * 299.99811 * 12 3 2 16 16 N 1.46493 * 109.47443 * 305.00098 * 15 12 3 17 17 C 1.34773 * 120.00432 * 179.97438 * 16 15 12 18 18 O 1.21515 * 119.99865 * 0.02562 * 17 16 15 19 19 C 1.48176 * 120.00334 * 179.97438 * 17 16 15 20 20 C 1.39308 * 119.72277 * 179.72774 * 19 17 16 21 21 C 1.38588 * 119.05652 * 179.75499 * 20 19 17 22 22 C 1.38626 * 118.48524 * 0.51142 * 21 20 19 23 23 C 1.50706 * 120.32244 * 179.70805 * 22 21 20 24 24 C 1.52993 * 109.47371 * 180.02562 * 23 22 21 25 25 C 1.53006 * 109.46896 * 300.02090 * 23 22 21 26 26 C 1.53005 * 109.47132 * 60.02019 * 23 22 21 27 27 C 1.38555 * 119.35504 * 359.73001 * 22 21 20 28 28 N 1.31521 * 120.90606 * 0.02562 * 27 22 21 29 29 H 1.09003 * 109.47021 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47000 * 299.99852 * 1 2 3 31 31 H 1.09000 * 109.47439 * 59.99772 * 1 2 3 32 32 H 1.09000 * 109.47000 * 240.00148 * 2 1 3 33 33 H 1.08997 * 109.46951 * 120.00166 * 2 1 3 34 34 H 0.97002 * 119.99878 * 179.97438 * 7 6 4 35 35 H 1.09010 * 109.46667 * 299.99396 * 14 12 3 36 36 H 1.08995 * 109.47351 * 59.99558 * 14 12 3 37 37 H 1.08992 * 109.47265 * 180.02562 * 14 12 3 38 38 H 1.09002 * 109.47402 * 65.00485 * 15 12 3 39 39 H 1.09000 * 109.47108 * 185.00171 * 15 12 3 40 40 H 0.97006 * 119.99840 * 0.02562 * 16 15 12 41 41 H 1.07999 * 120.47073 * 359.97438 * 20 19 17 42 42 H 1.08000 * 120.75684 * 180.23695 * 21 20 19 43 43 H 1.08993 * 109.47486 * 59.99526 * 24 23 22 44 44 H 1.09000 * 109.47702 * 180.02562 * 24 23 22 45 45 H 1.09004 * 109.46838 * 299.99695 * 24 23 22 46 46 H 1.09003 * 109.47008 * 60.00012 * 25 23 22 47 47 H 1.09002 * 109.47143 * 179.97438 * 25 23 22 48 48 H 1.08993 * 109.46951 * 299.99855 * 25 23 22 49 49 H 1.08998 * 109.46972 * 59.99857 * 26 23 22 50 50 H 1.09002 * 109.47124 * 180.02562 * 26 23 22 51 51 H 1.08996 * 109.46966 * 300.00019 * 26 23 22 52 52 H 1.08007 * 119.54966 * 180.02562 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1572 2.0584 -1.1821 5 1 1.8866 3.1023 -1.2415 6 6 2.6459 1.4031 -2.3040 7 7 2.3638 1.8576 -3.5066 8 14 3.7037 -0.1238 -2.1071 9 1 2.8508 -1.3345 -2.2163 10 1 4.7387 -0.1497 -3.1717 11 1 4.3629 -0.1012 -0.7766 12 6 2.3579 2.0380 1.2647 13 1 2.7005 3.0535 1.0662 14 6 3.4692 1.2531 1.9647 15 6 1.1210 2.0832 2.1641 16 7 0.0194 2.7302 1.4474 17 6 -1.1780 2.8817 2.0472 18 8 -1.3437 2.4820 3.1827 19 6 -2.2922 3.5367 1.3224 20 6 -3.5291 3.6851 1.9459 21 6 -4.5600 4.3043 1.2571 22 6 -4.3210 4.7440 -0.0357 23 6 -5.4145 5.4169 -0.8249 24 6 -4.8845 5.7974 -2.2087 25 6 -6.5970 4.4581 -0.9776 26 6 -5.8721 6.6781 -0.0894 27 6 -3.0672 4.5585 -0.5953 28 7 -2.1049 3.9719 0.0827 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.7056 1.3999 -4.2905 35 1 3.1269 0.2374 2.1632 36 1 4.3503 1.2209 1.3239 37 1 3.7216 1.7415 2.9058 38 1 0.8316 1.0679 2.4352 39 1 1.3491 2.6493 3.0673 40 1 0.1515 3.0490 0.5408 41 1 -3.6814 3.3260 2.9529 42 1 -5.5288 4.4372 1.7154 43 1 -4.5584 4.8990 -2.7326 44 1 -5.6752 6.2845 -2.7794 45 1 -4.0420 6.4805 -2.0999 46 1 -6.9746 4.1870 0.0083 47 1 -7.3881 4.9449 -1.5481 48 1 -6.2710 3.5597 -1.5016 49 1 -5.0296 7.3611 0.0195 50 1 -6.6633 7.1645 -0.6600 51 1 -6.2497 6.4069 0.8964 52 1 -2.8774 4.9002 -1.6021 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001153413695.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:26 Heat of formation + Delta-G solvation = 9.410241 kcal Electronic energy + Delta-G solvation = -29893.232403 eV Core-core repulsion = 26086.164395 eV Total energy + Delta-G solvation = -3807.068008 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.76294 -39.11808 -37.28613 -36.77078 -33.92139 -32.41327 -31.97116 -31.20469 -30.53118 -28.60378 -27.80016 -27.54255 -26.22485 -24.13314 -23.54166 -23.20126 -22.31149 -20.55689 -19.52581 -19.26880 -17.78495 -16.86837 -16.71097 -15.89334 -15.67750 -15.21186 -14.97673 -14.89298 -14.55163 -14.36932 -14.07773 -13.87535 -13.39684 -13.22438 -13.00830 -12.86394 -12.75648 -12.62640 -12.53290 -12.40490 -12.26645 -12.10265 -11.95092 -11.75518 -11.33508 -11.32961 -11.28069 -11.20413 -11.02245 -10.97778 -10.69282 -10.34831 -9.96722 -9.94231 -9.84656 -9.68558 -9.48014 -9.28679 -9.02283 -8.48536 -8.45489 -6.81771 -5.99921 -3.42273 0.71437 1.24557 2.98031 3.33974 3.48270 3.52506 3.54572 3.99628 4.20363 4.42605 4.46645 4.54505 4.71224 4.81736 4.90836 4.94989 5.03247 5.09918 5.30302 5.32245 5.33324 5.44296 5.48720 5.48828 5.58792 5.60822 5.72200 5.75709 5.81431 5.85051 5.91890 5.97995 6.01256 6.03353 6.04043 6.08284 6.18471 6.21412 6.27664 6.38091 6.45117 6.59385 6.63984 6.72671 6.80447 6.93303 6.99559 7.20959 7.78743 8.07166 8.14257 8.38748 8.61675 8.99833 9.71578 10.13765 11.15071 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.013810 B = 0.003376 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2026.991206 B = 8291.246185 C = 9598.386384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.134 3.866 3 N -0.598 5.598 4 C -0.269 4.269 5 H 0.078 0.922 6 C 0.043 3.957 7 N -0.895 5.895 8 Si 0.875 3.125 9 H -0.288 1.288 10 H -0.304 1.304 11 H -0.267 1.267 12 C 0.155 3.845 13 H 0.079 0.921 14 C -0.162 4.162 15 C 0.105 3.895 16 N -0.681 5.681 17 C 0.563 3.437 18 O -0.555 6.555 19 C 0.079 3.921 20 C -0.114 4.114 21 C -0.083 4.083 22 C -0.108 4.108 23 C -0.026 4.026 24 C -0.150 4.150 25 C -0.139 4.139 26 C -0.139 4.139 27 C 0.100 3.900 28 N -0.441 5.441 29 H 0.032 0.968 30 H 0.049 0.951 31 H 0.059 0.941 32 H 0.047 0.953 33 H 0.039 0.961 34 H 0.262 0.738 35 H 0.049 0.951 36 H 0.060 0.940 37 H 0.047 0.953 38 H 0.063 0.937 39 H 0.060 0.940 40 H 0.424 0.576 41 H 0.145 0.855 42 H 0.136 0.864 43 H 0.064 0.936 44 H 0.061 0.939 45 H 0.063 0.937 46 H 0.056 0.944 47 H 0.061 0.939 48 H 0.059 0.941 49 H 0.058 0.942 50 H 0.061 0.939 51 H 0.056 0.944 52 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.362 6.917 7.263 18.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.009 3.991 3 N -0.321 5.321 4 C -0.398 4.398 5 H 0.096 0.904 6 C -0.158 4.158 7 N -0.535 5.535 8 Si 0.706 3.294 9 H -0.216 1.216 10 H -0.232 1.232 11 H -0.192 1.192 12 C 0.048 3.952 13 H 0.097 0.903 14 C -0.221 4.221 15 C -0.021 4.021 16 N -0.332 5.332 17 C 0.347 3.653 18 O -0.434 6.434 19 C -0.059 4.059 20 C -0.135 4.135 21 C -0.109 4.109 22 C -0.110 4.110 23 C -0.027 4.027 24 C -0.207 4.207 25 C -0.197 4.197 26 C -0.196 4.196 27 C -0.059 4.059 28 N -0.151 5.151 29 H 0.051 0.949 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.065 0.935 33 H 0.057 0.943 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.079 0.921 37 H 0.066 0.934 38 H 0.081 0.919 39 H 0.078 0.922 40 H 0.263 0.737 41 H 0.163 0.837 42 H 0.154 0.846 43 H 0.083 0.917 44 H 0.080 0.920 45 H 0.082 0.918 46 H 0.075 0.925 47 H 0.080 0.920 48 H 0.078 0.922 49 H 0.077 0.923 50 H 0.080 0.920 51 H 0.075 0.925 52 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -14.541 6.493 7.493 17.599 hybrid contribution -0.174 -0.793 -0.157 0.827 sum -14.715 5.700 7.336 17.402 Atomic orbital electron populations 1.22339 0.98893 0.99076 1.02198 1.21038 0.92630 0.86734 0.98688 1.44210 1.74467 1.11361 1.02028 1.18705 1.38788 0.96829 0.85433 0.90421 1.25478 0.97490 0.97649 0.95207 1.69892 1.44482 1.41741 0.97421 0.86961 0.81306 0.83698 0.77463 1.21606 1.23226 1.19214 1.20777 0.90524 0.97427 0.86520 0.90317 1.22235 0.99939 1.00344 0.99610 1.22022 0.87735 0.97266 0.95046 1.45856 1.09954 1.57637 1.19718 1.17889 0.82558 0.79416 0.85462 1.90727 1.82991 1.51595 1.18074 1.21289 0.94155 0.99016 0.91454 1.22070 0.92396 0.97498 1.01521 1.21364 0.99194 0.96477 0.93840 1.21058 0.96260 0.98604 0.95066 1.19487 0.93158 0.95122 0.94920 1.22008 1.01500 1.02091 0.95119 1.21907 0.96690 0.99030 1.02041 1.21901 1.01328 0.96319 1.00048 1.22929 0.87985 0.95006 1.00025 1.67721 1.33989 1.07200 1.06224 0.94944 0.93157 0.92230 0.93513 0.94304 0.92821 0.93244 0.92078 0.93383 0.91923 0.92190 0.73722 0.83747 0.84605 0.91687 0.91983 0.91822 0.92456 0.92037 0.92199 0.92294 0.92046 0.92457 0.81837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.37 9.83 37.16 0.37 -3.00 16 2 C 0.13 2.89 4.70 -4.04 -0.02 2.87 16 3 N -0.60 -13.25 1.42 -165.66 -0.23 -13.49 16 4 C -0.27 -7.04 9.50 -15.06 -0.14 -7.19 16 5 H 0.08 2.19 8.06 -52.48 -0.42 1.76 16 6 C 0.04 1.19 5.29 -17.43 -0.09 1.10 16 7 N -0.89 -26.44 13.97 55.49 0.78 -25.67 16 8 Si 0.88 21.85 25.23 -169.99 -4.29 17.56 16 9 H -0.29 -7.15 6.66 56.52 0.38 -6.77 16 10 H -0.30 -7.78 7.11 56.52 0.40 -7.38 16 11 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 12 C 0.16 2.90 2.87 -67.93 -0.19 2.70 16 13 H 0.08 1.50 7.89 -51.93 -0.41 1.09 16 14 C -0.16 -2.71 9.18 37.16 0.34 -2.37 16 15 C 0.10 1.84 4.33 -4.05 -0.02 1.82 16 16 N -0.68 -12.51 3.98 -61.15 -0.24 -12.76 16 17 C 0.56 10.28 7.57 -12.18 -0.09 10.18 16 18 O -0.55 -11.01 16.32 5.35 0.09 -10.93 16 19 C 0.08 1.29 6.75 -83.00 -0.56 0.73 16 20 C -0.11 -1.53 9.63 -39.05 -0.38 -1.90 16 21 C -0.08 -0.89 8.84 -39.31 -0.35 -1.24 16 22 C -0.11 -1.16 4.77 -104.36 -0.50 -1.66 16 23 C -0.03 -0.21 0.86 -155.66 -0.13 -0.35 16 24 C -0.15 -1.17 7.14 37.15 0.27 -0.90 16 25 C -0.14 -1.02 8.29 37.16 0.31 -0.71 16 26 C -0.14 -0.97 8.29 37.16 0.31 -0.66 16 27 C 0.10 1.33 10.15 -17.57 -0.18 1.15 16 28 N -0.44 -7.23 9.54 -9.80 -0.09 -7.32 16 29 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.05 1.00 4.89 -51.93 -0.25 0.74 16 31 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 32 H 0.05 1.11 3.44 -51.93 -0.18 0.93 16 33 H 0.04 0.76 6.43 -51.93 -0.33 0.43 16 34 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 35 H 0.05 0.81 6.66 -51.92 -0.35 0.46 16 36 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.06 1.14 6.96 -51.93 -0.36 0.77 16 39 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 40 H 0.42 8.42 7.22 -40.82 -0.29 8.12 16 41 H 0.14 1.82 7.64 -52.49 -0.40 1.42 16 42 H 0.14 1.07 7.24 -52.49 -0.38 0.69 16 43 H 0.06 0.54 7.53 -51.93 -0.39 0.15 16 44 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.06 0.50 7.53 -51.93 -0.39 0.11 16 46 H 0.06 0.39 7.45 -51.93 -0.39 0.00 16 47 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 48 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 49 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 50 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 51 H 0.06 0.37 7.45 -51.93 -0.39 -0.01 16 52 H 0.16 1.93 5.91 -52.48 -0.31 1.62 16 LS Contribution 401.35 15.07 6.05 6.05 Total: -1.00 -30.64 401.35 -7.65 -38.29 By element: Atomic # 1 Polarization: 16.31 SS G_CDS: -8.64 Total: 7.67 kcal Atomic # 6 Polarization: 1.65 SS G_CDS: -1.06 Total: 0.59 kcal Atomic # 7 Polarization: -59.44 SS G_CDS: 0.20 Total: -59.23 kcal Atomic # 8 Polarization: -11.01 SS G_CDS: 0.09 Total: -10.93 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.29 Total: 17.56 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -30.64 -7.65 -38.29 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153413695.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.697 kcal (2) G-P(sol) polarization free energy of solvation -30.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.287 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds