Wall clock time and date at job start Tue Mar 31 2020 18:32:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46503 * 109.46900 * 2 1 4 4 C 1.36932 * 120.00210 * 274.57886 * 3 2 1 5 5 H 1.08004 * 119.99985 * 140.38579 * 4 3 2 6 6 C 1.38818 * 119.99963 * 320.38690 * 4 3 2 7 7 N 1.31615 * 119.99876 * 156.48947 * 6 4 3 8 8 Si 1.86796 * 120.00015 * 336.49092 * 6 4 3 9 9 H 1.48498 * 109.47557 * 95.30341 * 8 6 4 10 10 H 1.48499 * 109.47067 * 215.30404 * 8 6 4 11 11 H 1.48499 * 109.47224 * 335.30105 * 8 6 4 12 12 C 1.46497 * 119.99521 * 94.57902 * 3 2 1 13 13 H 1.09000 * 109.46915 * 179.97438 * 12 3 2 14 14 C 1.53004 * 109.47246 * 60.00410 * 12 3 2 15 15 C 1.52996 * 109.47255 * 299.99811 * 12 3 2 16 16 N 1.46493 * 109.47443 * 305.00098 * 15 12 3 17 17 C 1.34773 * 120.00432 * 179.97438 * 16 15 12 18 18 O 1.21515 * 119.99865 * 0.02562 * 17 16 15 19 19 C 1.48176 * 120.00334 * 179.97438 * 17 16 15 20 20 C 1.39308 * 119.72277 * 179.72774 * 19 17 16 21 21 C 1.38588 * 119.05652 * 179.75499 * 20 19 17 22 22 C 1.38626 * 118.48524 * 0.51142 * 21 20 19 23 23 C 1.50706 * 120.32244 * 179.70805 * 22 21 20 24 24 C 1.52993 * 109.47371 * 180.02562 * 23 22 21 25 25 C 1.53006 * 109.46896 * 300.02090 * 23 22 21 26 26 C 1.53005 * 109.47132 * 60.02019 * 23 22 21 27 27 C 1.38555 * 119.35504 * 359.73001 * 22 21 20 28 28 N 1.31521 * 120.90606 * 0.02562 * 27 22 21 29 29 H 1.09003 * 109.47021 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47000 * 299.99852 * 1 2 3 31 31 H 1.09000 * 109.47439 * 59.99772 * 1 2 3 32 32 H 1.09000 * 109.47000 * 240.00148 * 2 1 3 33 33 H 1.08997 * 109.46951 * 120.00166 * 2 1 3 34 34 H 0.97002 * 119.99878 * 179.97438 * 7 6 4 35 35 H 1.09010 * 109.46667 * 299.99396 * 14 12 3 36 36 H 1.08995 * 109.47351 * 59.99558 * 14 12 3 37 37 H 1.08992 * 109.47265 * 180.02562 * 14 12 3 38 38 H 1.09002 * 109.47402 * 65.00485 * 15 12 3 39 39 H 1.09000 * 109.47108 * 185.00171 * 15 12 3 40 40 H 0.97006 * 119.99840 * 0.02562 * 16 15 12 41 41 H 1.07999 * 120.47073 * 359.97438 * 20 19 17 42 42 H 1.08000 * 120.75684 * 180.23695 * 21 20 19 43 43 H 1.08993 * 109.47486 * 59.99526 * 24 23 22 44 44 H 1.09000 * 109.47702 * 180.02562 * 24 23 22 45 45 H 1.09004 * 109.46838 * 299.99695 * 24 23 22 46 46 H 1.09003 * 109.47008 * 60.00012 * 25 23 22 47 47 H 1.09002 * 109.47143 * 179.97438 * 25 23 22 48 48 H 1.08993 * 109.46951 * 299.99855 * 25 23 22 49 49 H 1.08998 * 109.46972 * 59.99857 * 26 23 22 50 50 H 1.09002 * 109.47124 * 180.02562 * 26 23 22 51 51 H 1.08996 * 109.46966 * 300.00019 * 26 23 22 52 52 H 1.08007 * 119.54966 * 180.02562 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1572 2.0584 -1.1821 5 1 1.8866 3.1023 -1.2415 6 6 2.6459 1.4031 -2.3040 7 7 2.3638 1.8576 -3.5066 8 14 3.7037 -0.1238 -2.1071 9 1 2.8508 -1.3345 -2.2163 10 1 4.7387 -0.1497 -3.1717 11 1 4.3629 -0.1012 -0.7766 12 6 2.3579 2.0380 1.2647 13 1 2.7005 3.0535 1.0662 14 6 3.4692 1.2531 1.9647 15 6 1.1210 2.0832 2.1641 16 7 0.0194 2.7302 1.4474 17 6 -1.1780 2.8817 2.0472 18 8 -1.3437 2.4820 3.1827 19 6 -2.2922 3.5367 1.3224 20 6 -3.5291 3.6851 1.9459 21 6 -4.5600 4.3043 1.2571 22 6 -4.3210 4.7440 -0.0357 23 6 -5.4145 5.4169 -0.8249 24 6 -4.8845 5.7974 -2.2087 25 6 -6.5970 4.4581 -0.9776 26 6 -5.8721 6.6781 -0.0894 27 6 -3.0672 4.5585 -0.5953 28 7 -2.1049 3.9719 0.0827 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.7056 1.3999 -4.2905 35 1 3.1269 0.2374 2.1632 36 1 4.3503 1.2209 1.3239 37 1 3.7216 1.7415 2.9058 38 1 0.8316 1.0679 2.4352 39 1 1.3491 2.6493 3.0673 40 1 0.1515 3.0490 0.5408 41 1 -3.6814 3.3260 2.9529 42 1 -5.5288 4.4372 1.7154 43 1 -4.5584 4.8990 -2.7326 44 1 -5.6752 6.2845 -2.7794 45 1 -4.0420 6.4805 -2.0999 46 1 -6.9746 4.1870 0.0083 47 1 -7.3881 4.9449 -1.5481 48 1 -6.2710 3.5597 -1.5016 49 1 -5.0296 7.3611 0.0195 50 1 -6.6633 7.1645 -0.6600 51 1 -6.2497 6.4069 0.8964 52 1 -2.8774 4.9002 -1.6021 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001153413695.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:25 Heat of formation + Delta-G solvation = -8.209480 kcal Electronic energy + Delta-G solvation = -29893.996452 eV Core-core repulsion = 26086.164395 eV Total energy + Delta-G solvation = -3807.832056 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.83573 -40.43806 -38.81772 -37.72418 -35.51730 -33.96964 -33.31343 -32.85099 -31.60235 -30.40430 -28.46642 -28.08527 -27.52327 -25.64183 -25.12768 -24.20897 -23.97152 -21.78457 -20.92417 -20.32129 -19.11397 -18.74066 -17.84688 -17.56383 -16.88542 -16.48201 -16.45158 -16.10993 -15.82852 -15.34903 -15.19555 -14.87912 -14.72674 -14.57555 -14.48092 -14.34459 -14.15487 -14.00940 -13.67653 -13.61391 -13.43212 -13.11568 -12.95865 -12.88283 -12.79192 -12.62680 -12.56672 -12.53413 -12.14414 -12.06225 -11.91950 -11.79234 -11.70058 -11.41863 -11.37605 -11.26976 -10.83761 -10.53991 -10.39889 -10.15112 -9.84108 -8.72067 -8.14509 -5.52479 -0.36767 0.25060 1.33884 1.43918 1.54777 1.71410 2.21680 2.47528 2.85344 3.07874 3.16890 3.35508 3.56321 3.70225 3.87193 3.94954 4.00119 4.08902 4.11523 4.26455 4.27525 4.37955 4.49351 4.50567 4.66963 4.69869 4.72828 4.74624 4.78512 4.81332 4.81751 4.85568 4.91772 4.96066 4.99149 5.04970 5.06634 5.12356 5.17929 5.18175 5.27116 5.32275 5.36592 5.45188 5.47100 5.48062 5.57123 5.62796 6.00595 6.26082 6.49940 6.84890 7.04601 7.18905 7.68140 8.12490 9.04526 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.013810 B = 0.003376 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2026.991206 B = 8291.246185 C = 9598.386384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.130 3.870 3 N -0.604 5.604 4 C -0.246 4.246 5 H 0.046 0.954 6 C -0.011 4.011 7 N -0.943 5.943 8 Si 0.933 3.067 9 H -0.285 1.285 10 H -0.315 1.315 11 H -0.252 1.252 12 C 0.154 3.846 13 H 0.070 0.930 14 C -0.154 4.154 15 C 0.112 3.888 16 N -0.687 5.687 17 C 0.561 3.439 18 O -0.575 6.575 19 C 0.046 3.954 20 C -0.111 4.111 21 C -0.074 4.074 22 C -0.091 4.091 23 C -0.024 4.024 24 C -0.152 4.152 25 C -0.138 4.138 26 C -0.137 4.137 27 C 0.083 3.917 28 N -0.476 5.476 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.027 0.973 32 H 0.027 0.973 33 H 0.067 0.933 34 H 0.259 0.741 35 H 0.056 0.944 36 H 0.046 0.954 37 H 0.080 0.920 38 H 0.062 0.938 39 H 0.077 0.923 40 H 0.414 0.586 41 H 0.152 0.848 42 H 0.174 0.826 43 H 0.053 0.947 44 H 0.078 0.922 45 H 0.058 0.942 46 H 0.067 0.933 47 H 0.078 0.922 48 H 0.046 0.954 49 H 0.050 0.950 50 H 0.077 0.923 51 H 0.066 0.934 52 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.109 6.712 9.221 20.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.005 3.995 3 N -0.327 5.327 4 C -0.375 4.375 5 H 0.063 0.937 6 C -0.207 4.207 7 N -0.587 5.587 8 Si 0.763 3.237 9 H -0.213 1.213 10 H -0.244 1.244 11 H -0.176 1.176 12 C 0.048 3.952 13 H 0.088 0.912 14 C -0.213 4.213 15 C -0.013 4.013 16 N -0.336 5.336 17 C 0.347 3.653 18 O -0.456 6.456 19 C -0.091 4.091 20 C -0.132 4.132 21 C -0.099 4.099 22 C -0.093 4.093 23 C -0.025 4.025 24 C -0.209 4.209 25 C -0.196 4.196 26 C -0.194 4.194 27 C -0.077 4.077 28 N -0.187 5.187 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.046 0.954 32 H 0.045 0.955 33 H 0.085 0.915 34 H 0.068 0.932 35 H 0.075 0.925 36 H 0.065 0.935 37 H 0.099 0.901 38 H 0.080 0.920 39 H 0.095 0.905 40 H 0.252 0.748 41 H 0.169 0.831 42 H 0.192 0.808 43 H 0.073 0.927 44 H 0.097 0.903 45 H 0.077 0.923 46 H 0.086 0.914 47 H 0.097 0.903 48 H 0.065 0.935 49 H 0.069 0.931 50 H 0.096 0.904 51 H 0.085 0.915 52 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -16.281 6.276 9.508 19.871 hybrid contribution 0.229 -0.603 -0.753 0.992 sum -16.051 5.673 8.754 19.143 Atomic orbital electron populations 1.22193 0.98197 1.00079 1.00754 1.21110 0.93167 0.86165 0.99008 1.44236 1.74869 1.11582 1.02007 1.18561 1.36450 0.95615 0.86912 0.93665 1.25992 0.99090 1.00742 0.94923 1.70013 1.46584 1.43918 0.98172 0.86021 0.79450 0.80729 0.77528 1.21252 1.24400 1.17587 1.20885 0.91948 0.97088 0.85277 0.91190 1.22130 0.98063 1.00647 1.00480 1.21966 0.86844 0.97448 0.95074 1.45923 1.10539 1.57860 1.19281 1.18218 0.82838 0.78941 0.85301 1.90692 1.83404 1.52680 1.18819 1.21131 0.94723 1.01281 0.91978 1.22225 0.91900 0.97267 1.01838 1.21747 0.99913 0.94820 0.93409 1.21388 0.95858 0.96814 0.95231 1.19580 0.92479 0.95794 0.94621 1.22031 1.01965 1.01683 0.95266 1.21916 0.96516 0.98319 1.02810 1.21902 1.01526 0.95315 1.00653 1.23180 0.88825 0.95329 1.00353 1.67593 1.35772 1.08464 1.06825 0.92695 0.92815 0.95365 0.95455 0.91464 0.93174 0.92497 0.93525 0.90095 0.92014 0.90534 0.74825 0.83055 0.80829 0.92749 0.90258 0.92316 0.91439 0.90325 0.93493 0.93128 0.90378 0.91462 0.81366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.14 9.83 71.98 0.71 -5.43 16 2 C 0.13 5.45 4.70 86.38 0.41 5.85 16 3 N -0.60 -26.66 1.42 -678.03 -0.96 -27.62 16 4 C -0.25 -13.21 9.50 84.04 0.80 -12.42 16 5 H 0.05 2.70 8.06 -2.91 -0.02 2.68 16 6 C -0.01 -0.60 5.29 84.86 0.45 -0.15 16 7 N -0.94 -57.90 13.97 21.65 0.30 -57.60 16 8 Si 0.93 45.68 25.23 68.60 1.73 47.41 16 9 H -0.28 -13.67 6.66 99.48 0.66 -13.01 16 10 H -0.31 -15.86 7.11 99.48 0.71 -15.15 16 11 H -0.25 -11.57 7.11 99.48 0.71 -10.86 16 12 C 0.15 5.63 2.87 44.99 0.13 5.76 16 13 H 0.07 2.67 7.89 -2.39 -0.02 2.65 16 14 C -0.15 -4.74 9.18 71.98 0.66 -4.08 16 15 C 0.11 3.80 4.33 86.38 0.37 4.17 16 16 N -0.69 -25.63 3.98 -465.68 -1.85 -27.48 16 17 C 0.56 20.75 7.57 86.88 0.66 21.41 16 18 O -0.57 -22.69 16.32 -3.76 -0.06 -22.76 16 19 C 0.05 1.53 6.75 41.91 0.28 1.81 16 20 C -0.11 -2.88 9.63 22.61 0.22 -2.66 16 21 C -0.07 -1.41 8.84 22.45 0.20 -1.22 16 22 C -0.09 -1.84 4.77 -19.69 -0.09 -1.94 16 23 C -0.02 -0.34 0.86 -52.92 -0.05 -0.38 16 24 C -0.15 -2.19 7.14 71.98 0.51 -1.68 16 25 C -0.14 -1.63 8.29 71.98 0.60 -1.04 16 26 C -0.14 -1.49 8.29 71.98 0.60 -0.89 16 27 C 0.08 2.25 10.15 84.81 0.86 3.11 16 28 N -0.48 -16.21 9.54 -184.91 -1.76 -17.98 16 29 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.05 2.10 4.89 -2.39 -0.01 2.09 16 31 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.03 1.27 3.44 -2.39 -0.01 1.26 16 33 H 0.07 2.45 6.43 -2.39 -0.02 2.43 16 34 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 35 H 0.06 1.67 6.66 -2.38 -0.02 1.66 16 36 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 38 H 0.06 2.13 6.96 -2.39 -0.02 2.11 16 39 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 40 H 0.41 17.19 7.22 -92.70 -0.67 16.52 16 41 H 0.15 3.64 7.64 -2.91 -0.02 3.61 16 42 H 0.17 2.01 7.24 -2.91 -0.02 1.99 16 43 H 0.05 0.89 7.53 -2.39 -0.02 0.87 16 44 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 45 H 0.06 0.89 7.53 -2.38 -0.02 0.88 16 46 H 0.07 0.67 7.45 -2.39 -0.02 0.65 16 47 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 48 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 49 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 50 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 51 H 0.07 0.61 7.45 -2.39 -0.02 0.60 16 52 H 0.17 4.19 5.91 -2.91 -0.02 4.17 16 Total: -1.00 -68.60 401.35 4.90 -63.69 By element: Atomic # 1 Polarization: 31.90 SS G_CDS: 0.20 Total: 32.10 kcal Atomic # 6 Polarization: 2.93 SS G_CDS: 7.31 Total: 10.24 kcal Atomic # 7 Polarization: -126.41 SS G_CDS: -4.28 Total: -130.68 kcal Atomic # 8 Polarization: -22.69 SS G_CDS: -0.06 Total: -22.76 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 1.73 Total: 47.41 kcal Total: -68.60 4.90 -63.69 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153413695.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.482 kcal (2) G-P(sol) polarization free energy of solvation -68.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds