Wall clock time and date at job start Tue Mar 31 2020 18:33:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46498 * 109.47369 * 2 1 4 4 C 1.36938 * 119.99862 * 272.47358 * 3 2 1 5 5 H 1.08005 * 120.00146 * 179.97438 * 4 3 2 6 6 C 1.38814 * 120.00090 * 359.97438 * 4 3 2 7 7 N 1.31612 * 120.00144 * 31.47405 * 6 4 3 8 8 Si 1.86799 * 119.99757 * 211.47852 * 6 4 3 9 9 H 1.48503 * 109.47345 * 94.99727 * 8 6 4 10 10 H 1.48500 * 109.46788 * 214.99171 * 8 6 4 11 11 H 1.48493 * 109.47570 * 334.99334 * 8 6 4 12 12 C 1.46503 * 120.00148 * 92.47206 * 3 2 1 13 13 H 1.09002 * 109.46709 * 180.02562 * 12 3 2 14 14 C 1.52995 * 109.46984 * 60.00320 * 12 3 2 15 15 C 1.52998 * 109.46972 * 299.99971 * 12 3 2 16 16 N 1.46503 * 109.47278 * 305.00004 * 15 12 3 17 17 C 1.34773 * 119.99614 * 180.02562 * 16 15 12 18 18 O 1.21281 * 120.00286 * 354.66537 * 17 16 15 19 19 C 1.50701 * 119.99799 * 174.66906 * 17 16 15 20 20 H 1.09008 * 109.46859 * 314.79966 * 19 17 16 21 21 C 1.50698 * 109.47111 * 194.80317 * 19 17 16 22 22 C 1.38657 * 120.78661 * 299.71285 * 21 19 17 23 23 C 1.38205 * 119.15969 * 179.75686 * 22 21 19 24 24 N 1.31871 * 120.76212 * 0.53645 * 23 22 21 25 25 C 1.31865 * 121.72782 * 359.73768 * 24 23 22 26 26 C 1.38197 * 120.76582 * 359.97438 * 25 24 23 27 27 C 1.52995 * 109.47269 * 74.79814 * 19 17 16 28 28 C 1.53000 * 109.47036 * 293.32416 * 27 19 17 29 29 C 1.53002 * 109.47128 * 173.32325 * 27 19 17 30 30 H 1.08994 * 109.47717 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46921 * 299.99979 * 1 2 3 32 32 H 1.09002 * 109.47373 * 59.99464 * 1 2 3 33 33 H 1.08999 * 109.47113 * 239.99815 * 2 1 3 34 34 H 1.09001 * 109.47034 * 119.99644 * 2 1 3 35 35 H 0.96997 * 120.00184 * 180.02562 * 7 6 4 36 36 H 1.09004 * 109.47215 * 179.97438 * 14 12 3 37 37 H 1.09002 * 109.47072 * 300.00023 * 14 12 3 38 38 H 1.09005 * 109.47493 * 60.00050 * 14 12 3 39 39 H 1.09000 * 109.46859 * 185.00054 * 15 12 3 40 40 H 1.09002 * 109.47176 * 65.00256 * 15 12 3 41 41 H 0.96996 * 119.99696 * 0.02562 * 16 15 12 42 42 H 1.07998 * 120.41701 * 0.02562 * 22 21 19 43 43 H 1.07998 * 119.61653 * 180.25501 * 23 22 21 44 44 H 1.08000 * 119.61546 * 180.02562 * 25 24 23 45 45 H 1.08003 * 120.41893 * 180.02562 * 26 25 24 46 46 H 1.09005 * 109.47109 * 53.32051 * 27 19 17 47 47 H 1.08993 * 109.47189 * 297.68238 * 28 27 19 48 48 H 1.09011 * 109.46685 * 177.68753 * 28 27 19 49 49 H 1.08991 * 109.47377 * 57.69153 * 28 27 19 50 50 H 1.08996 * 109.46862 * 60.00186 * 29 27 19 51 51 H 1.09004 * 109.46967 * 180.02562 * 29 27 19 52 52 H 1.09001 * 109.47172 * 300.00055 * 29 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1983 2.0437 -1.1848 5 1 2.5580 3.0621 -1.1849 6 6 1.9185 1.4065 -2.3859 7 7 0.9646 0.5016 -2.4442 8 14 2.8961 1.8332 -3.9194 9 1 4.0152 0.8699 -4.0771 10 1 2.0090 1.7602 -5.1081 11 1 3.4411 3.2086 -3.7923 12 6 2.3141 2.0536 1.2676 13 1 2.6629 3.0669 1.0685 14 6 3.4003 1.2775 2.0151 15 6 1.0469 2.1096 2.1230 16 7 -0.0292 2.7476 1.3605 17 6 -1.2463 2.9072 1.9170 18 8 -1.4794 2.4374 3.0105 19 6 -2.3176 3.6692 1.1803 20 1 -1.8933 4.5843 0.7667 21 6 -3.4315 4.0181 2.1334 22 6 -4.1403 3.0241 2.7908 23 6 -5.1521 3.3822 3.6616 24 7 -5.4523 4.6506 3.8617 25 6 -4.8033 5.6217 3.2497 26 6 -3.7758 5.3402 2.3695 27 6 -2.8695 2.8046 0.0452 28 6 -1.7805 2.5892 -1.0077 29 6 -4.0669 3.5087 -0.5963 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8901 32 1 -0.3634 0.5139 -0.8899 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 0.7693 0.0560 -3.2833 36 1 3.6207 1.7781 2.9581 37 1 3.0511 0.2643 2.2141 38 1 4.3031 1.2376 1.4057 39 1 1.2436 2.6869 3.0264 40 1 0.7479 1.0977 2.3963 41 1 0.1344 3.0552 0.4552 42 1 -3.9019 1.9835 2.6278 43 1 -5.7062 2.6142 4.1807 44 1 -5.0773 6.6490 3.4393 45 1 -3.2477 6.1400 1.8716 46 1 -3.1856 1.8404 0.4435 47 1 -1.4936 3.5497 -1.4354 48 1 -2.1608 1.9394 -1.7960 49 1 -0.9115 2.1247 -0.5418 50 1 -3.7508 4.4727 -0.9947 51 1 -4.4604 2.8924 -1.4047 52 1 -4.8428 3.6622 0.1538 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001154851030.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:08 Heat of formation + Delta-G solvation = 23.577773 kcal Electronic energy + Delta-G solvation = -31225.301175 eV Core-core repulsion = 27418.847517 eV Total energy + Delta-G solvation = -3806.453658 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -40.67659 -39.23249 -37.16257 -36.03895 -33.96694 -32.52299 -31.96971 -31.10206 -30.23873 -28.66323 -28.03877 -26.79080 -25.40544 -23.76909 -23.46847 -22.39855 -21.90829 -20.51052 -19.65332 -19.06519 -17.06925 -17.01190 -16.78566 -15.83230 -15.65139 -15.43881 -15.24648 -14.87526 -14.18583 -14.04231 -13.90659 -13.57573 -13.45320 -13.18741 -13.01931 -12.70654 -12.58492 -12.44533 -12.23573 -12.12335 -11.93323 -11.83338 -11.54093 -11.48618 -11.17390 -11.03220 -10.84046 -10.80486 -10.75022 -10.53737 -10.35726 -10.18243 -9.91201 -9.68984 -9.63696 -9.38481 -9.21811 -9.18312 -9.01199 -8.45173 -8.34872 -7.06945 -5.90035 -3.13557 1.22164 1.32544 3.00796 3.33288 3.42757 3.45533 3.62494 3.96933 4.40934 4.49151 4.53516 4.73874 4.99684 5.09064 5.15204 5.18466 5.23067 5.26695 5.33179 5.47985 5.49764 5.54222 5.68536 5.75450 5.86764 5.87648 5.94133 6.00798 6.02774 6.08808 6.12657 6.18468 6.26720 6.29259 6.41302 6.45193 6.56450 6.58710 6.66826 6.77082 6.80719 6.92975 6.97832 7.02237 7.12603 7.18585 7.59843 7.71894 8.02172 8.07473 8.14366 8.22369 8.68055 9.14674 9.77105 10.22676 11.11002 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.015454 B = 0.003869 C = 0.003439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.434617 B = 7234.580678 C = 8138.998633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.171 3.829 3 N -0.593 5.593 4 C -0.264 4.264 5 H 0.074 0.926 6 C 0.013 3.987 7 N -0.877 5.877 8 Si 0.878 3.122 9 H -0.291 1.291 10 H -0.296 1.296 11 H -0.282 1.282 12 C 0.161 3.839 13 H 0.067 0.933 14 C -0.158 4.158 15 C 0.103 3.897 16 N -0.700 5.700 17 C 0.517 3.483 18 O -0.551 6.551 19 C -0.069 4.069 20 H 0.100 0.900 21 C -0.011 4.011 22 C -0.131 4.131 23 C 0.090 3.910 24 N -0.491 5.491 25 C 0.090 3.910 26 C -0.170 4.170 27 C -0.079 4.079 28 C -0.171 4.171 29 C -0.143 4.143 30 H 0.011 0.989 31 H 0.021 0.979 32 H 0.112 0.888 33 H 0.074 0.926 34 H 0.006 0.994 35 H 0.252 0.748 36 H 0.044 0.956 37 H 0.051 0.949 38 H 0.058 0.942 39 H 0.051 0.949 40 H 0.063 0.937 41 H 0.414 0.586 42 H 0.134 0.866 43 H 0.152 0.848 44 H 0.151 0.849 45 H 0.131 0.869 46 H 0.073 0.927 47 H 0.050 0.950 48 H 0.061 0.939 49 H 0.104 0.896 50 H 0.055 0.945 51 H 0.058 0.942 52 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.062 6.178 6.010 11.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.046 3.954 3 N -0.315 5.315 4 C -0.392 4.392 5 H 0.092 0.908 6 C -0.185 4.185 7 N -0.521 5.521 8 Si 0.708 3.292 9 H -0.218 1.218 10 H -0.223 1.223 11 H -0.208 1.208 12 C 0.052 3.948 13 H 0.086 0.914 14 C -0.218 4.218 15 C -0.023 4.023 16 N -0.353 5.353 17 C 0.302 3.698 18 O -0.430 6.430 19 C -0.090 4.090 20 H 0.118 0.882 21 C -0.020 4.020 22 C -0.150 4.150 23 C -0.066 4.066 24 N -0.200 5.200 25 C -0.067 4.067 26 C -0.190 4.190 27 C -0.098 4.098 28 C -0.228 4.228 29 C -0.201 4.201 30 H 0.030 0.970 31 H 0.040 0.960 32 H 0.130 0.870 33 H 0.092 0.908 34 H 0.025 0.975 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.070 0.930 38 H 0.077 0.923 39 H 0.070 0.930 40 H 0.081 0.919 41 H 0.254 0.746 42 H 0.152 0.848 43 H 0.169 0.831 44 H 0.169 0.831 45 H 0.149 0.851 46 H 0.092 0.908 47 H 0.069 0.931 48 H 0.081 0.919 49 H 0.123 0.877 50 H 0.074 0.926 51 H 0.077 0.923 52 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -7.920 5.976 7.201 12.260 hybrid contribution 1.341 0.019 -1.915 2.338 sum -6.579 5.995 5.286 10.352 Atomic orbital electron populations 1.22830 0.99048 0.98371 1.02539 1.20679 0.92741 0.84363 0.97609 1.44245 1.76144 1.10938 1.00171 1.19205 1.38972 0.97756 0.83235 0.90783 1.24591 0.98033 0.98954 0.96969 1.70212 1.26496 1.30100 1.25330 0.86647 0.81080 0.77854 0.83637 1.21827 1.22258 1.20786 1.20558 0.91253 0.96300 0.86720 0.91441 1.22176 0.99779 1.00638 0.99160 1.22036 0.88642 0.97536 0.94125 1.46161 1.10119 1.59914 1.19113 1.20156 0.83203 0.80414 0.85987 1.90662 1.80850 1.50061 1.21432 1.20493 0.92904 1.00527 0.95102 0.88157 1.19748 0.94349 0.93186 0.94688 1.21987 0.95477 1.00880 0.96700 1.22687 0.95165 0.93111 0.95617 1.67612 1.28100 1.00922 1.23384 1.22608 0.92510 0.98548 0.93051 1.22011 0.99769 0.96478 1.00711 1.21078 0.96649 0.97973 0.94121 1.22375 0.99649 1.02262 0.98516 1.21854 0.97270 1.00552 1.00403 0.97025 0.95977 0.86986 0.90762 0.97550 0.93736 0.93663 0.92955 0.92279 0.93039 0.91896 0.74613 0.84794 0.83058 0.83123 0.85080 0.90818 0.93054 0.91947 0.87737 0.92567 0.92261 0.93056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.57 8.15 37.15 0.30 -3.27 16 2 C 0.17 3.71 5.04 -4.05 -0.02 3.69 16 3 N -0.59 -12.37 1.92 -165.67 -0.32 -12.68 16 4 C -0.26 -6.08 9.39 -15.06 -0.14 -6.22 16 5 H 0.07 1.70 7.82 -52.48 -0.41 1.29 16 6 C 0.01 0.31 4.86 -17.43 -0.08 0.23 16 7 N -0.88 -21.38 8.35 55.49 0.46 -20.91 16 8 Si 0.88 19.64 29.65 -169.99 -5.04 14.60 16 9 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 10 H -0.30 -6.81 7.11 56.52 0.40 -6.40 16 11 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 12 C 0.16 2.83 2.87 -67.93 -0.20 2.64 16 13 H 0.07 1.18 7.77 -51.93 -0.40 0.78 16 14 C -0.16 -2.49 9.18 37.16 0.34 -2.15 16 15 C 0.10 1.77 4.32 -4.04 -0.02 1.75 16 16 N -0.70 -11.84 3.09 -60.29 -0.19 -12.03 16 17 C 0.52 8.70 6.50 -10.99 -0.07 8.63 16 18 O -0.55 -10.76 14.77 5.56 0.08 -10.68 16 19 C -0.07 -0.95 2.03 -92.93 -0.19 -1.14 16 20 H 0.10 1.24 7.94 -51.92 -0.41 0.83 16 21 C -0.01 -0.15 3.02 -104.32 -0.31 -0.47 16 22 C -0.13 -1.82 7.93 -39.44 -0.31 -2.13 16 23 C 0.09 1.18 11.18 -17.55 -0.20 0.99 16 24 N -0.49 -6.69 10.36 -13.26 -0.14 -6.83 16 25 C 0.09 1.07 11.18 -17.55 -0.20 0.87 16 26 C -0.17 -2.02 9.76 -39.44 -0.39 -2.40 16 27 C -0.08 -1.09 2.24 -90.62 -0.20 -1.29 16 28 C -0.17 -2.71 8.01 37.16 0.30 -2.41 16 29 C -0.14 -1.69 8.85 37.16 0.33 -1.36 16 30 H 0.01 0.23 8.14 -51.93 -0.42 -0.20 16 31 H 0.02 0.45 4.59 -51.92 -0.24 0.21 16 32 H 0.11 2.51 3.81 -51.93 -0.20 2.31 16 33 H 0.07 1.83 6.09 -51.93 -0.32 1.51 16 34 H 0.01 0.13 6.43 -51.93 -0.33 -0.20 16 35 H 0.25 6.19 8.31 -40.82 -0.34 5.85 16 36 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.05 0.85 6.66 -51.93 -0.35 0.50 16 38 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.06 1.19 6.81 -51.93 -0.35 0.84 16 41 H 0.41 7.24 5.72 -40.82 -0.23 7.01 16 42 H 0.13 1.92 7.39 -52.49 -0.39 1.53 16 43 H 0.15 1.60 8.06 -52.49 -0.42 1.18 16 44 H 0.15 1.34 8.06 -52.49 -0.42 0.92 16 45 H 0.13 1.24 8.01 -52.48 -0.42 0.82 16 46 H 0.07 1.09 7.71 -51.93 -0.40 0.69 16 47 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 48 H 0.06 1.04 8.14 -51.92 -0.42 0.62 16 49 H 0.10 1.89 2.25 -51.93 -0.12 1.78 16 50 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 51 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 52 H 0.05 0.60 6.94 -51.93 -0.36 0.24 16 LS Contribution 389.46 15.07 5.87 5.87 Total: -1.00 -26.34 389.46 -8.62 -34.96 By element: Atomic # 1 Polarization: 20.07 SS G_CDS: -8.29 Total: 11.77 kcal Atomic # 6 Polarization: -3.01 SS G_CDS: -1.06 Total: -4.06 kcal Atomic # 7 Polarization: -52.28 SS G_CDS: -0.18 Total: -52.46 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: 0.08 Total: -10.68 kcal Atomic # 14 Polarization: 19.64 SS G_CDS: -5.04 Total: 14.60 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -26.34 -8.62 -34.96 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154851030.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.535 kcal (2) G-P(sol) polarization free energy of solvation -26.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.957 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds