Wall clock time and date at job start Tue Mar 31 2020 18:33:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46498 * 109.47369 * 2 1 4 4 C 1.36938 * 119.99862 * 272.47358 * 3 2 1 5 5 H 1.08005 * 120.00146 * 179.97438 * 4 3 2 6 6 C 1.38814 * 120.00090 * 359.97438 * 4 3 2 7 7 N 1.31612 * 120.00144 * 31.47405 * 6 4 3 8 8 Si 1.86799 * 119.99757 * 211.47852 * 6 4 3 9 9 H 1.48503 * 109.47345 * 94.99727 * 8 6 4 10 10 H 1.48500 * 109.46788 * 214.99171 * 8 6 4 11 11 H 1.48493 * 109.47570 * 334.99334 * 8 6 4 12 12 C 1.46503 * 120.00148 * 92.47206 * 3 2 1 13 13 H 1.09002 * 109.46709 * 180.02562 * 12 3 2 14 14 C 1.52995 * 109.46984 * 60.00320 * 12 3 2 15 15 C 1.52998 * 109.46972 * 299.99971 * 12 3 2 16 16 N 1.46503 * 109.47278 * 305.00004 * 15 12 3 17 17 C 1.34773 * 119.99614 * 180.02562 * 16 15 12 18 18 O 1.21281 * 120.00286 * 354.66537 * 17 16 15 19 19 C 1.50701 * 119.99799 * 174.66906 * 17 16 15 20 20 H 1.09008 * 109.46859 * 314.79966 * 19 17 16 21 21 C 1.50698 * 109.47111 * 194.80317 * 19 17 16 22 22 C 1.38657 * 120.78661 * 299.71285 * 21 19 17 23 23 C 1.38205 * 119.15969 * 179.75686 * 22 21 19 24 24 N 1.31871 * 120.76212 * 0.53645 * 23 22 21 25 25 C 1.31865 * 121.72782 * 359.73768 * 24 23 22 26 26 C 1.38197 * 120.76582 * 359.97438 * 25 24 23 27 27 C 1.52995 * 109.47269 * 74.79814 * 19 17 16 28 28 C 1.53000 * 109.47036 * 293.32416 * 27 19 17 29 29 C 1.53002 * 109.47128 * 173.32325 * 27 19 17 30 30 H 1.08994 * 109.47717 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46921 * 299.99979 * 1 2 3 32 32 H 1.09002 * 109.47373 * 59.99464 * 1 2 3 33 33 H 1.08999 * 109.47113 * 239.99815 * 2 1 3 34 34 H 1.09001 * 109.47034 * 119.99644 * 2 1 3 35 35 H 0.96997 * 120.00184 * 180.02562 * 7 6 4 36 36 H 1.09004 * 109.47215 * 179.97438 * 14 12 3 37 37 H 1.09002 * 109.47072 * 300.00023 * 14 12 3 38 38 H 1.09005 * 109.47493 * 60.00050 * 14 12 3 39 39 H 1.09000 * 109.46859 * 185.00054 * 15 12 3 40 40 H 1.09002 * 109.47176 * 65.00256 * 15 12 3 41 41 H 0.96996 * 119.99696 * 0.02562 * 16 15 12 42 42 H 1.07998 * 120.41701 * 0.02562 * 22 21 19 43 43 H 1.07998 * 119.61653 * 180.25501 * 23 22 21 44 44 H 1.08000 * 119.61546 * 180.02562 * 25 24 23 45 45 H 1.08003 * 120.41893 * 180.02562 * 26 25 24 46 46 H 1.09005 * 109.47109 * 53.32051 * 27 19 17 47 47 H 1.08993 * 109.47189 * 297.68238 * 28 27 19 48 48 H 1.09011 * 109.46685 * 177.68753 * 28 27 19 49 49 H 1.08991 * 109.47377 * 57.69153 * 28 27 19 50 50 H 1.08996 * 109.46862 * 60.00186 * 29 27 19 51 51 H 1.09004 * 109.46967 * 180.02562 * 29 27 19 52 52 H 1.09001 * 109.47172 * 300.00055 * 29 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1983 2.0437 -1.1848 5 1 2.5580 3.0621 -1.1849 6 6 1.9185 1.4065 -2.3859 7 7 0.9646 0.5016 -2.4442 8 14 2.8961 1.8332 -3.9194 9 1 4.0152 0.8699 -4.0771 10 1 2.0090 1.7602 -5.1081 11 1 3.4411 3.2086 -3.7923 12 6 2.3141 2.0536 1.2676 13 1 2.6629 3.0669 1.0685 14 6 3.4003 1.2775 2.0151 15 6 1.0469 2.1096 2.1230 16 7 -0.0292 2.7476 1.3605 17 6 -1.2463 2.9072 1.9170 18 8 -1.4794 2.4374 3.0105 19 6 -2.3176 3.6692 1.1803 20 1 -1.8933 4.5843 0.7667 21 6 -3.4315 4.0181 2.1334 22 6 -4.1403 3.0241 2.7908 23 6 -5.1521 3.3822 3.6616 24 7 -5.4523 4.6506 3.8617 25 6 -4.8033 5.6217 3.2497 26 6 -3.7758 5.3402 2.3695 27 6 -2.8695 2.8046 0.0452 28 6 -1.7805 2.5892 -1.0077 29 6 -4.0669 3.5087 -0.5963 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8901 32 1 -0.3634 0.5139 -0.8899 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 0.7693 0.0560 -3.2833 36 1 3.6207 1.7781 2.9581 37 1 3.0511 0.2643 2.2141 38 1 4.3031 1.2376 1.4057 39 1 1.2436 2.6869 3.0264 40 1 0.7479 1.0977 2.3963 41 1 0.1344 3.0552 0.4552 42 1 -3.9019 1.9835 2.6278 43 1 -5.7062 2.6142 4.1807 44 1 -5.0773 6.6490 3.4393 45 1 -3.2477 6.1400 1.8716 46 1 -3.1856 1.8404 0.4435 47 1 -1.4936 3.5497 -1.4354 48 1 -2.1608 1.9394 -1.7960 49 1 -0.9115 2.1247 -0.5418 50 1 -3.7508 4.4727 -0.9947 51 1 -4.4604 2.8924 -1.4047 52 1 -4.8428 3.6622 0.1538 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001154851030.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:07 Heat of formation + Delta-G solvation = 11.958229 kcal Electronic energy + Delta-G solvation = -31225.805036 eV Core-core repulsion = 27418.847517 eV Total energy + Delta-G solvation = -3806.957519 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -41.79825 -40.42455 -38.68854 -37.24345 -35.49980 -33.87396 -33.21250 -32.05706 -31.93237 -30.29351 -29.22977 -27.95447 -26.68534 -25.52777 -24.42977 -23.54537 -23.43519 -21.75141 -20.98959 -20.49779 -18.72205 -18.29262 -17.85710 -17.13104 -16.87673 -16.80861 -16.35896 -16.23050 -15.75515 -15.34561 -15.15744 -14.81038 -14.53446 -14.39818 -14.35818 -14.22994 -14.04419 -13.77386 -13.58752 -13.43146 -13.26754 -13.09550 -12.91775 -12.75721 -12.55195 -12.53318 -12.47694 -12.37498 -12.07344 -11.97264 -11.69587 -11.66636 -11.52233 -11.30934 -10.90495 -10.86555 -10.38679 -10.35079 -10.19005 -9.98039 -9.82775 -8.81925 -7.72992 -4.94844 0.27422 0.32687 1.52370 1.62159 1.63294 1.68656 2.37791 2.61367 2.96397 3.34733 3.44374 3.63772 3.64948 3.71409 3.91199 4.02621 4.10129 4.12914 4.26935 4.29200 4.38921 4.44493 4.48885 4.64001 4.66549 4.72161 4.75528 4.81152 4.84951 4.87676 4.95365 5.00815 5.03029 5.08773 5.12611 5.17778 5.25459 5.29771 5.35177 5.35944 5.42923 5.46630 5.49590 5.65816 5.68207 5.78606 5.83226 5.89438 6.35943 6.43374 6.71168 7.07208 7.32010 7.34206 8.01979 8.44865 9.26347 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.015454 B = 0.003869 C = 0.003439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.434617 B = 7234.580678 C = 8138.998633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.179 3.821 3 N -0.597 5.597 4 C -0.255 4.255 5 H 0.078 0.922 6 C -0.023 4.023 7 N -0.890 5.890 8 Si 0.922 3.078 9 H -0.306 1.306 10 H -0.306 1.306 11 H -0.277 1.277 12 C 0.160 3.840 13 H 0.075 0.925 14 C -0.150 4.150 15 C 0.110 3.890 16 N -0.699 5.699 17 C 0.515 3.485 18 O -0.581 6.581 19 C -0.060 4.060 20 H 0.121 0.879 21 C -0.023 4.023 22 C -0.146 4.146 23 C 0.083 3.917 24 N -0.509 5.509 25 C 0.088 3.912 26 C -0.166 4.166 27 C -0.069 4.069 28 C -0.165 4.165 29 C -0.136 4.136 30 H 0.005 0.995 31 H 0.024 0.976 32 H 0.103 0.897 33 H 0.044 0.956 34 H 0.015 0.985 35 H 0.243 0.757 36 H 0.073 0.927 37 H 0.044 0.956 38 H 0.053 0.947 39 H 0.065 0.935 40 H 0.044 0.956 41 H 0.413 0.587 42 H 0.120 0.880 43 H 0.168 0.832 44 H 0.183 0.817 45 H 0.160 0.840 46 H 0.056 0.944 47 H 0.059 0.941 48 H 0.047 0.953 49 H 0.083 0.917 50 H 0.070 0.930 51 H 0.060 0.940 52 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.194 8.446 6.701 12.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.053 3.947 3 N -0.319 5.319 4 C -0.384 4.384 5 H 0.096 0.904 6 C -0.220 4.220 7 N -0.536 5.536 8 Si 0.754 3.246 9 H -0.234 1.234 10 H -0.234 1.234 11 H -0.202 1.202 12 C 0.052 3.948 13 H 0.093 0.907 14 C -0.210 4.210 15 C -0.016 4.016 16 N -0.351 5.351 17 C 0.302 3.698 18 O -0.461 6.461 19 C -0.081 4.081 20 H 0.139 0.861 21 C -0.031 4.031 22 C -0.166 4.166 23 C -0.073 4.073 24 N -0.218 5.218 25 C -0.069 4.069 26 C -0.186 4.186 27 C -0.088 4.088 28 C -0.223 4.223 29 C -0.193 4.193 30 H 0.024 0.976 31 H 0.043 0.957 32 H 0.121 0.879 33 H 0.062 0.938 34 H 0.034 0.966 35 H 0.053 0.947 36 H 0.092 0.908 37 H 0.064 0.936 38 H 0.072 0.928 39 H 0.083 0.917 40 H 0.062 0.938 41 H 0.252 0.748 42 H 0.138 0.862 43 H 0.185 0.815 44 H 0.200 0.800 45 H 0.177 0.823 46 H 0.074 0.926 47 H 0.078 0.922 48 H 0.066 0.934 49 H 0.101 0.899 50 H 0.089 0.911 51 H 0.079 0.921 52 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -8.037 8.261 7.906 13.977 hybrid contribution 1.403 -0.671 -2.069 2.589 sum -6.634 7.590 5.837 11.649 Atomic orbital electron populations 1.22683 0.98758 0.97855 1.02136 1.20473 0.92838 0.84853 0.96499 1.44296 1.76102 1.10602 1.00939 1.19373 1.37385 0.97751 0.83857 0.90440 1.24950 0.98873 0.99749 0.98385 1.70311 1.27346 1.31056 1.24898 0.85943 0.79519 0.77361 0.81783 1.23427 1.23430 1.20163 1.20730 0.91926 0.96617 0.85532 0.90726 1.22077 0.98559 1.00228 1.00100 1.21908 0.88384 0.96783 0.94514 1.46187 1.10306 1.59706 1.18923 1.20665 0.83474 0.80014 0.85689 1.90648 1.81301 1.51313 1.22871 1.20447 0.92169 1.00702 0.94786 0.86091 1.19806 0.94327 0.94046 0.94954 1.21969 0.96405 1.00475 0.97731 1.22941 0.95125 0.93653 0.95533 1.67674 1.28817 1.01263 1.24096 1.23174 0.91910 0.99603 0.92202 1.22308 0.99612 0.96300 1.00363 1.20941 0.96733 0.97603 0.93555 1.22269 0.99399 1.02108 0.98487 1.21780 0.96231 1.00963 1.00315 0.97578 0.95702 0.87919 0.93761 0.96635 0.94662 0.90826 0.93646 0.92828 0.91708 0.93811 0.74787 0.86206 0.81505 0.80038 0.82267 0.92553 0.92168 0.93401 0.89867 0.91130 0.92095 0.92826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.67 8.15 71.98 0.59 -6.08 16 2 C 0.18 7.78 5.04 86.38 0.44 8.22 16 3 N -0.60 -24.51 1.92 -678.05 -1.30 -25.81 16 4 C -0.25 -11.54 9.39 84.03 0.79 -10.75 16 5 H 0.08 3.44 7.82 -2.91 -0.02 3.42 16 6 C -0.02 -1.08 4.86 84.86 0.41 -0.67 16 7 N -0.89 -43.99 8.35 21.65 0.18 -43.81 16 8 Si 0.92 40.47 29.65 68.60 2.03 42.51 16 9 H -0.31 -14.06 7.11 99.48 0.71 -13.36 16 10 H -0.31 -13.91 7.11 99.48 0.71 -13.20 16 11 H -0.28 -11.74 7.11 99.48 0.71 -11.04 16 12 C 0.16 5.37 2.87 44.99 0.13 5.50 16 13 H 0.07 2.43 7.77 -2.39 -0.02 2.42 16 14 C -0.15 -4.45 9.18 71.98 0.66 -3.79 16 15 C 0.11 3.66 4.32 86.38 0.37 4.03 16 16 N -0.70 -22.98 3.09 -463.06 -1.43 -24.41 16 17 C 0.52 16.91 6.50 87.66 0.57 17.48 16 18 O -0.58 -22.51 14.77 -3.03 -0.04 -22.56 16 19 C -0.06 -1.57 2.03 -12.29 -0.02 -1.59 16 20 H 0.12 2.65 7.94 -2.38 -0.02 2.63 16 21 C -0.02 -0.58 3.02 -19.67 -0.06 -0.64 16 22 C -0.15 -3.99 7.93 22.36 0.18 -3.81 16 23 C 0.08 2.10 11.18 84.68 0.95 3.05 16 24 N -0.51 -12.95 10.36 -195.85 -2.03 -14.98 16 25 C 0.09 1.84 11.18 84.68 0.95 2.78 16 26 C -0.17 -3.45 9.76 22.36 0.22 -3.23 16 27 C -0.07 -1.85 2.24 -10.79 -0.02 -1.87 16 28 C -0.17 -5.18 8.01 71.98 0.58 -4.60 16 29 C -0.14 -2.97 8.85 71.98 0.64 -2.33 16 30 H 0.01 0.22 8.14 -2.39 -0.02 0.20 16 31 H 0.02 1.02 4.59 -2.38 -0.01 1.01 16 32 H 0.10 4.68 3.81 -2.39 -0.01 4.67 16 33 H 0.04 2.21 6.09 -2.39 -0.01 2.20 16 34 H 0.02 0.64 6.43 -2.39 -0.02 0.62 16 35 H 0.24 12.20 8.31 -92.71 -0.77 11.43 16 36 H 0.07 1.77 8.14 -2.38 -0.02 1.75 16 37 H 0.04 1.40 6.66 -2.39 -0.02 1.38 16 38 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 39 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 40 H 0.04 1.63 6.81 -2.39 -0.02 1.62 16 41 H 0.41 13.99 5.72 -92.71 -0.53 13.46 16 42 H 0.12 3.54 7.39 -2.91 -0.02 3.52 16 43 H 0.17 3.44 8.06 -2.91 -0.02 3.42 16 44 H 0.18 2.53 8.06 -2.91 -0.02 2.51 16 45 H 0.16 2.34 8.01 -2.91 -0.02 2.31 16 46 H 0.06 1.70 7.71 -2.38 -0.02 1.68 16 47 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 48 H 0.05 1.60 8.14 -2.38 -0.02 1.59 16 49 H 0.08 3.00 2.25 -2.39 -0.01 3.00 16 50 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 51 H 0.06 1.31 8.14 -2.38 -0.02 1.29 16 52 H 0.05 1.16 6.94 -2.39 -0.02 1.14 16 Total: -1.00 -56.20 389.46 5.15 -51.05 By element: Atomic # 1 Polarization: 35.91 SS G_CDS: 0.39 Total: 36.30 kcal Atomic # 6 Polarization: -5.65 SS G_CDS: 7.35 Total: 1.70 kcal Atomic # 7 Polarization: -104.42 SS G_CDS: -4.58 Total: -109.00 kcal Atomic # 8 Polarization: -22.51 SS G_CDS: -0.04 Total: -22.56 kcal Atomic # 14 Polarization: 40.47 SS G_CDS: 2.03 Total: 42.51 kcal Total: -56.20 5.15 -51.05 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154851030.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.007 kcal (2) G-P(sol) polarization free energy of solvation -56.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.049 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds