Wall clock time and date at job start Tue Mar 31 2020 18:32:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46495 * 109.46926 * 2 1 4 4 C 1.36941 * 120.00391 * 275.70046 * 3 2 1 5 5 H 1.08000 * 119.99769 * 33.76861 * 4 3 2 6 6 C 1.38811 * 120.00197 * 213.77742 * 4 3 2 7 7 N 1.31619 * 120.00072 * 11.86743 * 6 4 3 8 8 Si 1.86802 * 119.99971 * 191.86548 * 6 4 3 9 9 H 1.48496 * 109.46969 * 89.99846 * 8 6 4 10 10 H 1.48496 * 109.47384 * 209.99986 * 8 6 4 11 11 H 1.48503 * 109.46986 * 329.99662 * 8 6 4 12 12 C 1.46506 * 120.00072 * 95.70183 * 3 2 1 13 13 H 1.08999 * 109.47118 * 183.38092 * 12 3 2 14 14 C 1.52994 * 109.47375 * 63.38007 * 12 3 2 15 15 C 1.52996 * 109.46836 * 303.37549 * 12 3 2 16 16 N 1.46497 * 109.47462 * 305.00321 * 15 12 3 17 17 C 1.34775 * 119.99850 * 179.97438 * 16 15 12 18 18 O 1.21551 * 120.00210 * 359.97438 * 17 16 15 19 19 C 1.47842 * 120.00075 * 179.97438 * 17 16 15 20 20 C 1.40028 * 120.55744 * 5.38558 * 19 17 16 21 21 C 1.38357 * 118.28776 * 179.75429 * 20 19 17 22 22 C 1.38351 * 119.30352 * 0.54517 * 21 20 19 23 23 C 1.50701 * 119.46130 * 179.70740 * 22 21 20 24 24 C 1.53001 * 109.46654 * 84.73649 * 23 22 21 25 25 C 1.52999 * 109.47376 * 324.73503 * 23 22 21 26 26 N 1.31929 * 121.07776 * 359.43963 * 22 21 20 27 27 C 1.31697 * 121.88086 * 0.26833 * 26 22 21 28 28 C 1.50698 * 119.71480 * 180.02562 * 27 26 22 29 29 H 1.09005 * 109.47084 * 299.99820 * 1 2 3 30 30 H 1.08999 * 109.47511 * 59.99484 * 1 2 3 31 31 H 1.08996 * 109.47095 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46838 * 239.99988 * 2 1 3 33 33 H 1.08994 * 109.47036 * 119.99959 * 2 1 3 34 34 H 0.97005 * 119.99838 * 180.02562 * 7 6 4 35 35 H 1.08997 * 109.47167 * 180.02562 * 14 12 3 36 36 H 1.09003 * 109.46671 * 300.00385 * 14 12 3 37 37 H 1.09002 * 109.47021 * 59.99760 * 14 12 3 38 38 H 1.08999 * 109.46935 * 184.99507 * 15 12 3 39 39 H 1.09005 * 109.47026 * 65.00040 * 15 12 3 40 40 H 0.96995 * 120.00154 * 359.97438 * 16 15 12 41 41 H 1.07996 * 120.85443 * 0.02562 * 20 19 17 42 42 H 1.08001 * 120.34687 * 180.25919 * 21 20 19 43 43 H 1.09002 * 109.46930 * 204.73283 * 23 22 21 44 44 H 1.09002 * 109.47153 * 299.99497 * 24 23 22 45 45 H 1.08991 * 109.47482 * 59.99914 * 24 23 22 46 46 H 1.09003 * 109.47068 * 180.02562 * 24 23 22 47 47 H 1.08992 * 109.46928 * 179.97438 * 25 23 22 48 48 H 1.09000 * 109.47126 * 300.00078 * 25 23 22 49 49 H 1.09003 * 109.46862 * 59.99331 * 25 23 22 50 50 H 1.09000 * 109.47176 * 97.31194 * 28 27 26 51 51 H 1.09008 * 109.46620 * 217.30808 * 28 27 26 52 52 H 1.08999 * 109.47515 * 337.30212 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1354 2.0661 -1.1800 5 1 1.4331 1.8866 -1.9806 6 6 3.1570 2.9908 -1.3473 7 7 4.1443 3.0453 -0.4785 8 14 3.1308 4.1580 -2.8056 9 1 2.4048 5.3988 -2.4334 10 1 4.5235 4.4969 -3.1936 11 1 2.4431 3.5061 -3.9490 12 6 2.3813 2.0298 1.2625 13 1 2.6625 3.0654 1.0712 14 6 3.5611 1.2896 1.8955 15 6 1.1856 1.9940 2.2164 16 7 0.0214 2.5975 1.5632 17 6 -1.1537 2.6756 2.2185 18 8 -1.2477 2.2449 3.3513 19 6 -2.3284 3.2850 1.5595 20 6 -2.2658 3.6826 0.2183 21 6 -3.3945 4.2431 -0.3528 22 6 -4.5343 4.4018 0.4151 23 6 -5.7636 5.0179 -0.2015 24 6 -6.5671 3.9364 -0.9264 25 6 -5.3460 6.0988 -1.2006 26 7 -4.5643 4.0178 1.6769 27 6 -3.5180 3.4741 2.2636 28 6 -3.6065 3.0526 3.7077 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 4.8580 3.6918 -0.5953 35 1 3.8309 1.7719 2.8349 36 1 3.2798 0.2540 2.0867 37 1 4.4129 1.3151 1.2158 38 1 1.4255 2.5533 3.1207 39 1 0.9602 0.9601 2.4778 40 1 0.0963 2.9408 0.6591 41 1 -1.3611 3.5511 -0.3567 42 1 -3.3844 4.5576 -1.3859 43 1 -6.3779 5.4639 0.5807 44 1 -5.9529 3.4903 -1.7087 45 1 -6.8647 3.1664 -0.2148 46 1 -7.4561 4.3820 -1.3729 47 1 -6.2351 6.5441 -1.6468 48 1 -4.7735 6.8693 -0.6841 49 1 -4.7317 5.6528 -1.9828 50 1 -3.8220 1.9855 3.7622 51 1 -2.6583 3.2577 4.2048 52 1 -4.4031 3.6098 4.2007 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155282974.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:35 Heat of formation + Delta-G solvation = 5.532383 kcal Electronic energy + Delta-G solvation = -30224.528532 eV Core-core repulsion = 26417.292368 eV Total energy + Delta-G solvation = -3807.236164 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.78194 -39.00463 -36.99815 -35.76505 -34.02772 -32.74960 -31.90101 -31.48588 -30.92838 -28.25058 -27.83849 -27.20856 -25.60212 -24.27681 -23.95880 -22.43295 -21.76294 -20.78136 -19.87351 -19.29769 -17.57847 -16.88493 -16.82499 -15.76719 -15.25231 -15.17291 -14.94381 -14.65811 -14.41051 -14.26041 -13.81911 -13.71995 -13.26163 -13.23858 -13.11278 -12.82576 -12.74001 -12.37500 -12.32996 -12.14268 -12.10203 -11.93852 -11.71101 -11.49639 -11.41764 -11.35942 -11.14601 -11.07960 -10.96501 -10.88018 -10.67225 -10.35341 -10.12883 -9.80825 -9.72371 -9.64985 -9.48261 -9.16519 -8.87825 -8.57173 -8.37576 -6.70166 -5.92323 -3.44364 0.73347 1.23753 3.11054 3.25768 3.34517 3.35663 3.61775 3.88973 4.03004 4.36185 4.50129 4.74940 4.86659 4.88003 4.94152 5.03594 5.16707 5.24362 5.34818 5.37077 5.49194 5.52563 5.58764 5.66735 5.74021 5.80019 5.88645 5.89047 5.97578 6.01158 6.01975 6.07675 6.15031 6.19844 6.23377 6.33840 6.35872 6.46214 6.54898 6.61015 6.67587 6.70134 6.81927 6.87928 7.02633 7.12852 7.48439 7.59109 7.72933 7.93114 8.07232 8.38733 8.63224 9.12453 9.72316 10.29278 11.14040 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.011201 B = 0.003931 C = 0.003237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2499.189962 B = 7122.035321 C = 8647.056126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.142 3.858 3 N -0.585 5.585 4 C -0.263 4.263 5 H 0.064 0.936 6 C 0.012 3.988 7 N -0.893 5.893 8 Si 0.898 3.102 9 H -0.287 1.287 10 H -0.290 1.290 11 H -0.279 1.279 12 C 0.178 3.822 13 H 0.101 0.899 14 C -0.143 4.143 15 C 0.102 3.898 16 N -0.694 5.694 17 C 0.553 3.447 18 O -0.547 6.547 19 C -0.189 4.189 20 C -0.033 4.033 21 C -0.186 4.186 22 C 0.157 3.843 23 C -0.048 4.048 24 C -0.141 4.141 25 C -0.149 4.149 26 N -0.493 5.493 27 C 0.188 3.812 28 C -0.106 4.106 29 H 0.053 0.947 30 H 0.045 0.955 31 H 0.032 0.968 32 H 0.040 0.960 33 H 0.036 0.964 34 H 0.255 0.745 35 H 0.031 0.969 36 H 0.027 0.973 37 H 0.082 0.918 38 H 0.055 0.945 39 H 0.055 0.945 40 H 0.409 0.591 41 H 0.144 0.856 42 H 0.140 0.860 43 H 0.090 0.910 44 H 0.058 0.942 45 H 0.058 0.942 46 H 0.063 0.937 47 H 0.063 0.937 48 H 0.058 0.942 49 H 0.062 0.938 50 H 0.080 0.920 51 H 0.103 0.897 52 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.987 2.827 1.006 15.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.015 3.985 3 N -0.306 5.306 4 C -0.393 4.393 5 H 0.081 0.919 6 C -0.188 4.188 7 N -0.536 5.536 8 Si 0.728 3.272 9 H -0.214 1.214 10 H -0.217 1.217 11 H -0.204 1.204 12 C 0.071 3.929 13 H 0.119 0.881 14 C -0.202 4.202 15 C -0.024 4.024 16 N -0.344 5.344 17 C 0.339 3.661 18 O -0.428 6.428 19 C -0.194 4.194 20 C -0.059 4.059 21 C -0.206 4.206 22 C 0.019 3.981 23 C -0.067 4.067 24 C -0.199 4.199 25 C -0.206 4.206 26 N -0.202 5.202 27 C 0.050 3.950 28 C -0.163 4.163 29 H 0.072 0.928 30 H 0.064 0.936 31 H 0.051 0.949 32 H 0.059 0.941 33 H 0.055 0.945 34 H 0.065 0.935 35 H 0.050 0.950 36 H 0.046 0.954 37 H 0.101 0.899 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.246 0.754 41 H 0.162 0.838 42 H 0.158 0.842 43 H 0.108 0.892 44 H 0.077 0.923 45 H 0.077 0.923 46 H 0.082 0.918 47 H 0.082 0.918 48 H 0.077 0.923 49 H 0.081 0.919 50 H 0.098 0.902 51 H 0.121 0.879 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -15.588 2.723 2.265 15.986 hybrid contribution 0.984 0.617 -1.861 2.194 sum -14.604 3.340 0.405 14.986 Atomic orbital electron populations 1.22497 1.00089 0.99118 1.01552 1.20735 0.91608 0.87419 0.98713 1.43902 1.76148 1.08233 1.02356 1.19106 1.08188 1.18684 0.93290 0.91868 1.25208 0.94784 1.01192 0.97572 1.69948 1.10431 1.36504 1.36744 0.86370 0.77029 0.81131 0.82670 1.21400 1.21666 1.20417 1.20506 0.88675 0.99870 0.83878 0.88092 1.22040 1.01142 0.97647 0.99397 1.22214 0.86743 0.96993 0.96421 1.45937 1.09590 1.59746 1.19132 1.17981 0.82847 0.79506 0.85716 1.90675 1.84559 1.49330 1.18212 1.20886 0.96679 1.06266 0.95581 1.21931 0.98822 0.91617 0.93570 1.21893 0.93626 1.03177 1.01884 1.21374 0.94608 0.92761 0.89396 1.20081 0.92952 0.95862 0.97797 1.21800 0.99612 0.98204 1.00270 1.21939 1.01833 0.98030 0.98827 1.67426 1.29392 1.12397 1.11013 1.21458 0.86827 0.89960 0.96794 1.21010 1.04410 1.01673 0.89160 0.92775 0.93588 0.94858 0.94137 0.94519 0.93485 0.95005 0.95441 0.89944 0.92680 0.92628 0.75369 0.83794 0.84210 0.89206 0.92337 0.92263 0.91847 0.91807 0.92254 0.91906 0.90160 0.87850 0.91716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.08 9.80 37.16 0.36 -2.71 16 2 C 0.14 2.80 5.59 -4.04 -0.02 2.78 16 3 N -0.58 -12.77 1.82 -165.67 -0.30 -13.07 16 4 C -0.26 -6.32 9.48 -15.06 -0.14 -6.46 16 5 H 0.06 1.52 7.86 -52.49 -0.41 1.11 16 6 C 0.01 0.31 4.98 -17.43 -0.09 0.22 16 7 N -0.89 -23.08 10.02 55.49 0.56 -22.52 16 8 Si 0.90 19.82 29.57 -169.99 -5.03 14.80 16 9 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 10 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 12 C 0.18 3.72 1.90 -67.93 -0.13 3.59 16 13 H 0.10 2.41 6.07 -51.93 -0.32 2.09 16 14 C -0.14 -2.90 9.03 37.15 0.34 -2.56 16 15 C 0.10 1.90 4.32 -4.05 -0.02 1.88 16 16 N -0.69 -12.33 3.65 -61.25 -0.22 -12.55 16 17 C 0.55 9.74 7.27 -12.33 -0.09 9.65 16 18 O -0.55 -10.55 13.37 5.32 0.07 -10.48 16 19 C -0.19 -2.99 5.89 -104.82 -0.62 -3.60 16 20 C -0.03 -0.47 9.64 -38.87 -0.37 -0.84 16 21 C -0.19 -2.30 9.16 -39.50 -0.36 -2.66 16 22 C 0.16 1.98 5.79 -82.51 -0.48 1.50 16 23 C -0.05 -0.46 3.23 -91.77 -0.30 -0.75 16 24 C -0.14 -1.19 9.18 37.16 0.34 -0.85 16 25 C -0.15 -1.17 8.62 37.16 0.32 -0.84 16 26 N -0.49 -7.19 10.17 -5.42 -0.06 -7.24 16 27 C 0.19 2.89 6.82 -82.17 -0.56 2.33 16 28 C -0.11 -1.49 8.86 36.00 0.32 -1.17 16 29 H 0.05 0.99 4.66 -51.93 -0.24 0.75 16 30 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.04 0.83 8.09 -51.93 -0.42 0.41 16 33 H 0.04 0.70 6.54 -51.93 -0.34 0.36 16 34 H 0.25 6.52 8.31 -40.82 -0.34 6.18 16 35 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.03 0.52 6.82 -51.93 -0.35 0.16 16 37 H 0.08 1.91 7.07 -51.93 -0.37 1.54 16 38 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.06 1.07 7.09 -51.93 -0.37 0.70 16 40 H 0.41 7.36 6.21 -40.82 -0.25 7.10 16 41 H 0.14 1.96 6.56 -52.49 -0.34 1.62 16 42 H 0.14 1.39 6.30 -52.49 -0.33 1.06 16 43 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 44 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 46 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 48 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 49 H 0.06 0.47 6.48 -51.93 -0.34 0.13 16 50 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 51 H 0.10 1.59 5.88 -51.92 -0.31 1.29 16 52 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 LS Contribution 401.12 15.07 6.04 6.04 Total: -1.00 -26.82 401.12 -9.03 -35.85 By element: Atomic # 1 Polarization: 18.29 SS G_CDS: -8.60 Total: 9.70 kcal Atomic # 6 Polarization: 0.98 SS G_CDS: -1.50 Total: -0.51 kcal Atomic # 7 Polarization: -55.36 SS G_CDS: -0.03 Total: -55.39 kcal Atomic # 8 Polarization: -10.55 SS G_CDS: 0.07 Total: -10.48 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.03 Total: 14.80 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -26.82 -9.03 -35.85 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155282974.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.378 kcal (2) G-P(sol) polarization free energy of solvation -26.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.846 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds