Wall clock time and date at job start Tue Mar 31 2020 18:32:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46495 * 109.46926 * 2 1 4 4 C 1.36941 * 120.00391 * 275.70046 * 3 2 1 5 5 H 1.08000 * 119.99769 * 33.76861 * 4 3 2 6 6 C 1.38811 * 120.00197 * 213.77742 * 4 3 2 7 7 N 1.31619 * 120.00072 * 11.86743 * 6 4 3 8 8 Si 1.86802 * 119.99971 * 191.86548 * 6 4 3 9 9 H 1.48496 * 109.46969 * 89.99846 * 8 6 4 10 10 H 1.48496 * 109.47384 * 209.99986 * 8 6 4 11 11 H 1.48503 * 109.46986 * 329.99662 * 8 6 4 12 12 C 1.46506 * 120.00072 * 95.70183 * 3 2 1 13 13 H 1.08999 * 109.47118 * 183.38092 * 12 3 2 14 14 C 1.52994 * 109.47375 * 63.38007 * 12 3 2 15 15 C 1.52996 * 109.46836 * 303.37549 * 12 3 2 16 16 N 1.46497 * 109.47462 * 305.00321 * 15 12 3 17 17 C 1.34775 * 119.99850 * 179.97438 * 16 15 12 18 18 O 1.21551 * 120.00210 * 359.97438 * 17 16 15 19 19 C 1.47842 * 120.00075 * 179.97438 * 17 16 15 20 20 C 1.40028 * 120.55744 * 5.38558 * 19 17 16 21 21 C 1.38357 * 118.28776 * 179.75429 * 20 19 17 22 22 C 1.38351 * 119.30352 * 0.54517 * 21 20 19 23 23 C 1.50701 * 119.46130 * 179.70740 * 22 21 20 24 24 C 1.53001 * 109.46654 * 84.73649 * 23 22 21 25 25 C 1.52999 * 109.47376 * 324.73503 * 23 22 21 26 26 N 1.31929 * 121.07776 * 359.43963 * 22 21 20 27 27 C 1.31697 * 121.88086 * 0.26833 * 26 22 21 28 28 C 1.50698 * 119.71480 * 180.02562 * 27 26 22 29 29 H 1.09005 * 109.47084 * 299.99820 * 1 2 3 30 30 H 1.08999 * 109.47511 * 59.99484 * 1 2 3 31 31 H 1.08996 * 109.47095 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46838 * 239.99988 * 2 1 3 33 33 H 1.08994 * 109.47036 * 119.99959 * 2 1 3 34 34 H 0.97005 * 119.99838 * 180.02562 * 7 6 4 35 35 H 1.08997 * 109.47167 * 180.02562 * 14 12 3 36 36 H 1.09003 * 109.46671 * 300.00385 * 14 12 3 37 37 H 1.09002 * 109.47021 * 59.99760 * 14 12 3 38 38 H 1.08999 * 109.46935 * 184.99507 * 15 12 3 39 39 H 1.09005 * 109.47026 * 65.00040 * 15 12 3 40 40 H 0.96995 * 120.00154 * 359.97438 * 16 15 12 41 41 H 1.07996 * 120.85443 * 0.02562 * 20 19 17 42 42 H 1.08001 * 120.34687 * 180.25919 * 21 20 19 43 43 H 1.09002 * 109.46930 * 204.73283 * 23 22 21 44 44 H 1.09002 * 109.47153 * 299.99497 * 24 23 22 45 45 H 1.08991 * 109.47482 * 59.99914 * 24 23 22 46 46 H 1.09003 * 109.47068 * 180.02562 * 24 23 22 47 47 H 1.08992 * 109.46928 * 179.97438 * 25 23 22 48 48 H 1.09000 * 109.47126 * 300.00078 * 25 23 22 49 49 H 1.09003 * 109.46862 * 59.99331 * 25 23 22 50 50 H 1.09000 * 109.47176 * 97.31194 * 28 27 26 51 51 H 1.09008 * 109.46620 * 217.30808 * 28 27 26 52 52 H 1.08999 * 109.47515 * 337.30212 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1354 2.0661 -1.1800 5 1 1.4331 1.8866 -1.9806 6 6 3.1570 2.9908 -1.3473 7 7 4.1443 3.0453 -0.4785 8 14 3.1308 4.1580 -2.8056 9 1 2.4048 5.3988 -2.4334 10 1 4.5235 4.4969 -3.1936 11 1 2.4431 3.5061 -3.9490 12 6 2.3813 2.0298 1.2625 13 1 2.6625 3.0654 1.0712 14 6 3.5611 1.2896 1.8955 15 6 1.1856 1.9940 2.2164 16 7 0.0214 2.5975 1.5632 17 6 -1.1537 2.6756 2.2185 18 8 -1.2477 2.2449 3.3513 19 6 -2.3284 3.2850 1.5595 20 6 -2.2658 3.6826 0.2183 21 6 -3.3945 4.2431 -0.3528 22 6 -4.5343 4.4018 0.4151 23 6 -5.7636 5.0179 -0.2015 24 6 -6.5671 3.9364 -0.9264 25 6 -5.3460 6.0988 -1.2006 26 7 -4.5643 4.0178 1.6769 27 6 -3.5180 3.4741 2.2636 28 6 -3.6065 3.0526 3.7077 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 4.8580 3.6918 -0.5953 35 1 3.8309 1.7719 2.8349 36 1 3.2798 0.2540 2.0867 37 1 4.4129 1.3151 1.2158 38 1 1.4255 2.5533 3.1207 39 1 0.9602 0.9601 2.4778 40 1 0.0963 2.9408 0.6591 41 1 -1.3611 3.5511 -0.3567 42 1 -3.3844 4.5576 -1.3859 43 1 -6.3779 5.4639 0.5807 44 1 -5.9529 3.4903 -1.7087 45 1 -6.8647 3.1664 -0.2148 46 1 -7.4561 4.3820 -1.3729 47 1 -6.2351 6.5441 -1.6468 48 1 -4.7735 6.8693 -0.6841 49 1 -4.7317 5.6528 -1.9828 50 1 -3.8220 1.9855 3.7622 51 1 -2.6583 3.2577 4.2048 52 1 -4.4031 3.6098 4.2007 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155282974.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:34 Heat of formation + Delta-G solvation = -6.571816 kcal Electronic energy + Delta-G solvation = -30225.053410 eV Core-core repulsion = 26417.292368 eV Total energy + Delta-G solvation = -3807.761042 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.92361 -40.33668 -38.60206 -36.65285 -35.48773 -34.03311 -33.62110 -32.69116 -32.32047 -29.92758 -28.93988 -27.94380 -26.94830 -25.79566 -25.37180 -23.57816 -23.26915 -21.93792 -21.07560 -20.86538 -19.02289 -18.45749 -17.97006 -16.91608 -16.67363 -16.55675 -16.44860 -15.98536 -15.74455 -15.35435 -15.15783 -14.93710 -14.58970 -14.34546 -14.20738 -14.01115 -13.99358 -13.89496 -13.65397 -13.48953 -13.21006 -13.14755 -12.98776 -12.80428 -12.76160 -12.68662 -12.55823 -12.36941 -12.21584 -12.06343 -12.05320 -11.87062 -11.85995 -11.33288 -11.18406 -10.95685 -10.88202 -10.43480 -10.39330 -10.08040 -9.72258 -8.50087 -7.79906 -5.33114 -0.38990 0.15458 1.50068 1.54478 1.60000 1.84329 2.25249 2.54927 2.73569 3.05830 3.35899 3.57482 3.64137 3.67396 3.74562 3.98597 4.13190 4.14604 4.26801 4.28712 4.45842 4.51347 4.58108 4.63595 4.68603 4.70560 4.75549 4.81736 4.82427 4.88050 4.89485 4.95262 4.96733 4.98779 5.01615 5.04386 5.07914 5.20808 5.22703 5.23348 5.31730 5.36723 5.43274 5.53090 5.58423 5.62549 5.72531 5.77235 5.94297 6.51596 6.62594 6.87893 7.21939 7.27392 7.93536 8.45842 9.23937 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.011201 B = 0.003931 C = 0.003237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2499.189962 B = 7122.035321 C = 8647.056126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.141 3.859 3 N -0.593 5.593 4 C -0.260 4.260 5 H 0.063 0.937 6 C -0.031 4.031 7 N -0.916 5.916 8 Si 0.953 3.047 9 H -0.284 1.284 10 H -0.303 1.303 11 H -0.273 1.273 12 C 0.185 3.815 13 H 0.072 0.928 14 C -0.134 4.134 15 C 0.115 3.885 16 N -0.693 5.693 17 C 0.555 3.445 18 O -0.567 6.567 19 C -0.208 4.208 20 C -0.036 4.036 21 C -0.181 4.181 22 C 0.157 3.843 23 C -0.047 4.047 24 C -0.138 4.138 25 C -0.146 4.146 26 N -0.505 5.505 27 C 0.177 3.823 28 C -0.099 4.099 29 H 0.047 0.953 30 H 0.041 0.959 31 H 0.052 0.948 32 H 0.031 0.969 33 H 0.042 0.958 34 H 0.248 0.752 35 H 0.046 0.954 36 H 0.038 0.962 37 H 0.051 0.949 38 H 0.056 0.944 39 H 0.054 0.946 40 H 0.408 0.592 41 H 0.146 0.854 42 H 0.168 0.832 43 H 0.088 0.912 44 H 0.060 0.940 45 H 0.045 0.955 46 H 0.084 0.916 47 H 0.082 0.918 48 H 0.052 0.948 49 H 0.069 0.931 50 H 0.079 0.921 51 H 0.088 0.912 52 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.066 3.252 -0.202 17.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.016 3.984 3 N -0.315 5.315 4 C -0.391 4.391 5 H 0.081 0.919 6 C -0.228 4.228 7 N -0.561 5.561 8 Si 0.782 3.218 9 H -0.211 1.211 10 H -0.231 1.231 11 H -0.198 1.198 12 C 0.078 3.922 13 H 0.090 0.910 14 C -0.194 4.194 15 C -0.010 4.010 16 N -0.343 5.343 17 C 0.343 3.657 18 O -0.450 6.450 19 C -0.214 4.214 20 C -0.062 4.062 21 C -0.200 4.200 22 C 0.019 3.981 23 C -0.066 4.066 24 C -0.196 4.196 25 C -0.204 4.204 26 N -0.215 5.215 27 C 0.039 3.961 28 C -0.156 4.156 29 H 0.066 0.934 30 H 0.060 0.940 31 H 0.071 0.929 32 H 0.050 0.950 33 H 0.060 0.940 34 H 0.057 0.943 35 H 0.065 0.935 36 H 0.057 0.943 37 H 0.070 0.930 38 H 0.075 0.925 39 H 0.072 0.928 40 H 0.245 0.755 41 H 0.164 0.836 42 H 0.186 0.814 43 H 0.107 0.893 44 H 0.079 0.921 45 H 0.064 0.936 46 H 0.103 0.897 47 H 0.101 0.899 48 H 0.071 0.929 49 H 0.088 0.912 50 H 0.097 0.903 51 H 0.106 0.894 52 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -17.691 3.135 1.055 17.998 hybrid contribution 1.561 0.471 -1.504 2.218 sum -16.130 3.606 -0.449 16.535 Atomic orbital electron populations 1.22313 0.98245 1.00231 1.01013 1.20795 0.92873 0.86236 0.98539 1.44019 1.76286 1.09073 1.02128 1.19278 1.07589 1.18376 0.93818 0.91908 1.25756 0.94803 1.02709 0.99549 1.70096 1.10903 1.36980 1.38093 0.85504 0.76061 0.79648 0.80556 1.21096 1.23057 1.19759 1.20330 0.89635 0.98190 0.84050 0.90996 1.21903 0.99741 0.98470 0.99256 1.21936 0.86279 0.97005 0.95788 1.45862 1.09497 1.59879 1.19027 1.18232 0.83084 0.78992 0.85413 1.90663 1.84920 1.50281 1.19105 1.20766 0.96164 1.07934 0.96490 1.22029 0.99612 0.91638 0.92947 1.22197 0.92695 1.02040 1.03090 1.22002 0.95865 0.91464 0.88793 1.20201 0.91655 0.96516 0.98208 1.21791 1.00321 0.97577 0.99872 1.21941 1.02791 0.97250 0.98380 1.67497 1.29060 1.12857 1.12115 1.21608 0.87004 0.90265 0.97257 1.20914 1.04034 1.01777 0.88870 0.93368 0.93967 0.92905 0.95007 0.93961 0.94293 0.93474 0.94312 0.92970 0.92527 0.92782 0.75463 0.83617 0.81438 0.89332 0.92099 0.93586 0.89671 0.89882 0.92864 0.91231 0.90273 0.89361 0.90309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.40 9.80 71.98 0.71 -4.70 16 2 C 0.14 5.46 5.59 86.38 0.48 5.95 16 3 N -0.59 -25.78 1.82 -678.06 -1.24 -27.01 16 4 C -0.26 -12.44 9.48 84.03 0.80 -11.64 16 5 H 0.06 2.98 7.86 -2.91 -0.02 2.95 16 6 C -0.03 -1.53 4.98 84.86 0.42 -1.11 16 7 N -0.92 -48.12 10.02 21.65 0.22 -47.91 16 8 Si 0.95 40.73 29.57 68.60 2.03 42.75 16 9 H -0.28 -11.91 7.11 99.48 0.71 -11.21 16 10 H -0.30 -13.55 7.11 99.48 0.71 -12.84 16 11 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 12 C 0.19 7.77 1.90 44.99 0.09 7.85 16 13 H 0.07 3.49 6.07 -2.39 -0.01 3.48 16 14 C -0.13 -5.45 9.03 71.98 0.65 -4.80 16 15 C 0.12 4.30 4.32 86.38 0.37 4.67 16 16 N -0.69 -24.51 3.65 -465.99 -1.70 -26.21 16 17 C 0.55 19.50 7.27 86.79 0.63 20.13 16 18 O -0.57 -21.99 13.37 -3.88 -0.05 -22.05 16 19 C -0.21 -6.50 5.89 -19.99 -0.12 -6.61 16 20 C -0.04 -0.98 9.64 22.73 0.22 -0.76 16 21 C -0.18 -4.07 9.16 22.33 0.20 -3.86 16 22 C 0.16 3.66 5.79 42.57 0.25 3.91 16 23 C -0.05 -0.77 3.23 -11.54 -0.04 -0.81 16 24 C -0.14 -1.95 9.18 71.98 0.66 -1.29 16 25 C -0.15 -1.82 8.62 71.98 0.62 -1.20 16 26 N -0.51 -14.17 10.17 -171.06 -1.74 -15.91 16 27 C 0.18 5.35 6.82 42.89 0.29 5.64 16 28 C -0.10 -2.79 8.86 71.24 0.63 -2.16 16 29 H 0.05 1.70 4.66 -2.38 -0.01 1.69 16 30 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.03 1.28 8.09 -2.39 -0.02 1.26 16 33 H 0.04 1.58 6.54 -2.39 -0.02 1.56 16 34 H 0.25 12.94 8.31 -92.70 -0.77 12.17 16 35 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.04 1.44 6.82 -2.39 -0.02 1.43 16 37 H 0.05 2.44 7.07 -2.39 -0.02 2.43 16 38 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 39 H 0.05 2.04 7.09 -2.38 -0.02 2.02 16 40 H 0.41 14.61 6.21 -92.71 -0.58 14.04 16 41 H 0.15 3.83 6.56 -2.91 -0.02 3.81 16 42 H 0.17 2.77 6.30 -2.91 -0.02 2.75 16 43 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 44 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 45 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 46 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 47 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 48 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 49 H 0.07 0.78 6.48 -2.39 -0.02 0.76 16 50 H 0.08 2.20 8.14 -2.39 -0.02 2.19 16 51 H 0.09 2.76 5.88 -2.38 -0.01 2.75 16 52 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 Total: -1.00 -57.16 401.12 4.72 -52.44 By element: Atomic # 1 Polarization: 34.34 SS G_CDS: 0.34 Total: 34.68 kcal Atomic # 6 Polarization: 2.35 SS G_CDS: 6.87 Total: 9.22 kcal Atomic # 7 Polarization: -112.58 SS G_CDS: -4.46 Total: -117.04 kcal Atomic # 8 Polarization: -21.99 SS G_CDS: -0.05 Total: -22.05 kcal Atomic # 14 Polarization: 40.73 SS G_CDS: 2.03 Total: 42.75 kcal Total: -57.16 4.72 -52.44 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155282974.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.865 kcal (2) G-P(sol) polarization free energy of solvation -57.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds