Wall clock time and date at job start Tue Mar 31 2020 18:32:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46503 * 109.47025 * 2 1 4 4 C 1.36929 * 120.00240 * 267.49585 * 3 2 1 5 5 H 1.08001 * 119.99800 * 138.73739 * 4 3 2 6 6 C 1.38819 * 120.00329 * 318.74089 * 4 3 2 7 7 N 1.31617 * 120.00120 * 170.47105 * 6 4 3 8 8 Si 1.86804 * 119.99534 * 350.47104 * 6 4 3 9 9 H 1.48496 * 109.47093 * 90.91791 * 8 6 4 10 10 H 1.48506 * 109.46706 * 210.91548 * 8 6 4 11 11 H 1.48492 * 109.47131 * 330.91584 * 8 6 4 12 12 C 1.46504 * 119.99510 * 87.50324 * 3 2 1 13 13 H 1.09003 * 109.46842 * 179.97438 * 12 3 2 14 14 C 1.52997 * 109.47421 * 59.99503 * 12 3 2 15 15 C 1.53008 * 109.46756 * 299.99391 * 12 3 2 16 16 N 1.46495 * 109.47243 * 305.00519 * 15 12 3 17 17 C 1.34777 * 119.99991 * 180.02562 * 16 15 12 18 18 O 1.21276 * 119.99687 * 354.56950 * 17 16 15 19 19 C 1.50696 * 119.99955 * 174.84483 * 17 16 15 20 20 H 1.09002 * 109.47235 * 334.16188 * 19 17 16 21 21 C 1.50696 * 109.47486 * 94.16120 * 19 17 16 22 22 C 1.38673 * 120.42395 * 239.72105 * 21 19 17 23 23 C 1.38627 * 118.42041 * 179.78368 * 22 21 19 24 24 C 1.38227 * 119.15973 * 0.51248 * 23 22 21 25 25 N 1.31856 * 120.76505 * 359.72464 * 24 23 22 26 26 C 1.31878 * 121.72579 * 0.02562 * 25 24 23 27 27 C 1.53003 * 109.47015 * 214.16710 * 19 17 16 28 28 C 1.53000 * 109.47312 * 63.45675 * 27 19 17 29 29 C 1.53005 * 109.46957 * 183.45646 * 27 19 17 30 30 H 1.08996 * 109.46972 * 299.99930 * 1 2 3 31 31 H 1.09003 * 109.47221 * 59.99939 * 1 2 3 32 32 H 1.09001 * 109.47066 * 179.97438 * 1 2 3 33 33 H 1.09009 * 109.47097 * 240.00261 * 2 1 3 34 34 H 1.08994 * 109.47349 * 120.00183 * 2 1 3 35 35 H 0.97001 * 119.99809 * 180.02562 * 7 6 4 36 36 H 1.08991 * 109.47402 * 299.99580 * 14 12 3 37 37 H 1.09001 * 109.47013 * 60.00074 * 14 12 3 38 38 H 1.09005 * 109.46775 * 179.97438 * 14 12 3 39 39 H 1.08999 * 109.46842 * 185.00512 * 15 12 3 40 40 H 1.08998 * 109.46884 * 65.00284 * 15 12 3 41 41 H 0.97010 * 120.00169 * 359.97438 * 16 15 12 42 42 H 1.07999 * 120.78509 * 0.02562 * 22 21 19 43 43 H 1.08003 * 120.41531 * 180.22102 * 23 22 21 44 44 H 1.08007 * 119.61503 * 179.75127 * 24 23 22 45 45 H 1.07998 * 119.61810 * 179.97438 * 26 25 24 46 46 H 1.08997 * 109.47082 * 303.44949 * 27 19 17 47 47 H 1.09000 * 109.47171 * 64.34267 * 28 27 19 48 48 H 1.09000 * 109.46723 * 184.34821 * 28 27 19 49 49 H 1.09002 * 109.46878 * 304.34168 * 28 27 19 50 50 H 1.08996 * 109.47314 * 59.99986 * 29 27 19 51 51 H 1.09008 * 109.46642 * 179.97438 * 29 27 19 52 52 H 1.08996 * 109.47045 * 299.99196 * 29 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2954 2.0095 -1.1847 5 1 2.0121 3.0419 -1.3276 6 6 2.9403 1.3196 -2.2021 7 7 3.0402 1.8554 -3.4001 8 14 3.6664 -0.3694 -1.8707 9 1 2.6523 -1.4117 -2.1708 10 1 4.8573 -0.5742 -2.7340 11 1 4.0670 -0.4647 -0.4440 12 6 2.2103 2.0902 1.2676 13 1 2.5761 3.0976 1.0687 14 6 3.2307 1.3373 2.1236 15 6 0.8773 2.1694 2.0146 16 7 -0.1320 2.7838 1.1486 17 6 -1.3904 2.9578 1.5988 18 8 -1.7131 2.5180 2.6819 19 6 -2.3980 3.6936 0.7536 20 1 -1.8790 4.3801 0.0846 21 6 -3.1906 2.7029 -0.0596 22 6 -3.1830 2.7657 -1.4449 23 6 -3.9233 1.8309 -2.1518 24 6 -4.6480 0.8807 -1.4571 25 7 -4.6357 0.8540 -0.1388 26 6 -3.9392 1.7242 0.5660 27 6 -3.3447 4.4829 1.6600 28 6 -2.5522 5.5470 2.4220 29 6 -4.4198 5.1605 0.8079 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8901 34 1 1.8933 -0.5138 0.8899 35 1 3.4906 1.3731 -4.1111 36 1 2.8653 0.3299 2.3226 37 1 4.1803 1.2809 1.5914 38 1 3.3738 1.8651 3.0666 39 1 1.0002 2.7727 2.9141 40 1 0.5559 1.1654 2.2915 41 1 0.1055 3.0660 0.2514 42 1 -2.6107 3.5225 -1.9608 43 1 -3.9375 1.8479 -3.2316 44 1 -5.2306 0.1513 -2.0004 45 1 -3.9539 1.6713 1.6445 46 1 -3.8179 3.8045 2.3699 47 1 -2.1429 6.2699 1.7163 48 1 -3.2114 6.0576 3.1240 49 1 -1.7378 5.0715 2.9686 50 1 -4.9844 4.4025 0.2651 51 1 -5.0945 5.7225 1.4538 52 1 -3.9467 5.8390 0.0981 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001156020694.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:56 Heat of formation + Delta-G solvation = 10.206340 kcal Electronic energy + Delta-G solvation = -31067.044851 eV Core-core repulsion = 27260.011364 eV Total energy + Delta-G solvation = -3807.033486 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.72834 -39.28052 -37.48077 -35.95291 -33.93749 -32.58038 -32.08066 -31.49774 -31.21749 -28.84213 -27.92694 -27.08709 -25.48697 -23.63806 -23.59611 -22.61232 -22.39802 -20.82682 -19.66290 -19.14784 -17.17748 -17.10191 -16.96374 -16.03000 -15.86227 -15.68454 -15.55809 -14.75614 -14.61470 -14.27544 -14.12819 -13.48767 -13.31041 -13.17577 -13.00960 -12.94656 -12.83207 -12.65965 -12.52869 -12.46698 -12.25149 -12.11355 -11.91808 -11.88205 -11.39734 -11.26749 -11.15197 -11.04282 -10.95233 -10.85501 -10.72882 -10.37078 -10.01914 -9.88882 -9.74870 -9.53338 -9.40272 -9.39040 -8.82779 -8.63314 -8.57970 -6.90352 -6.05278 -3.58914 1.11526 1.33653 2.90529 3.25586 3.40585 3.44216 3.52989 3.87081 4.43188 4.43709 4.64653 4.72694 4.79744 4.86918 4.95678 5.02300 5.08613 5.12157 5.23842 5.33694 5.41206 5.43860 5.55382 5.56671 5.60203 5.75758 5.77176 5.83664 5.85785 5.89507 5.94010 6.00633 6.03035 6.13379 6.14700 6.19469 6.20455 6.24149 6.28306 6.33244 6.34963 6.55409 6.66065 6.71908 6.73742 6.78815 6.92976 7.06279 7.95258 8.00745 8.02134 8.26232 8.55916 8.87969 9.60541 10.02771 11.08869 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.011802 B = 0.004526 C = 0.003874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2371.976616 B = 6185.580114 C = 7226.520640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.130 3.870 3 N -0.600 5.600 4 C -0.270 4.270 5 H 0.078 0.922 6 C 0.037 3.963 7 N -0.908 5.908 8 Si 0.899 3.101 9 H -0.288 1.288 10 H -0.307 1.307 11 H -0.269 1.269 12 C 0.158 3.842 13 H 0.078 0.922 14 C -0.161 4.161 15 C 0.105 3.895 16 N -0.702 5.702 17 C 0.520 3.480 18 O -0.551 6.551 19 C -0.059 4.059 20 H 0.097 0.903 21 C -0.119 4.119 22 C -0.062 4.062 23 C -0.169 4.169 24 C 0.092 3.908 25 N -0.484 5.484 26 C 0.113 3.887 27 C -0.075 4.075 28 C -0.148 4.148 29 C -0.145 4.145 30 H 0.056 0.944 31 H 0.052 0.948 32 H 0.032 0.968 33 H 0.048 0.952 34 H 0.038 0.962 35 H 0.263 0.737 36 H 0.048 0.952 37 H 0.060 0.940 38 H 0.047 0.953 39 H 0.057 0.943 40 H 0.063 0.937 41 H 0.411 0.589 42 H 0.136 0.864 43 H 0.135 0.865 44 H 0.152 0.848 45 H 0.156 0.844 46 H 0.084 0.916 47 H 0.054 0.946 48 H 0.057 0.943 49 H 0.059 0.941 50 H 0.054 0.946 51 H 0.056 0.944 52 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.970 4.820 6.680 14.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.005 3.995 3 N -0.324 5.324 4 C -0.399 4.399 5 H 0.096 0.904 6 C -0.164 4.164 7 N -0.549 5.549 8 Si 0.732 3.268 9 H -0.217 1.217 10 H -0.236 1.236 11 H -0.194 1.194 12 C 0.051 3.949 13 H 0.097 0.903 14 C -0.221 4.221 15 C -0.020 4.020 16 N -0.353 5.353 17 C 0.305 3.695 18 O -0.429 6.429 19 C -0.081 4.081 20 H 0.115 0.885 21 C -0.122 4.122 22 C -0.088 4.088 23 C -0.189 4.189 24 C -0.064 4.064 25 N -0.193 5.193 26 C -0.044 4.044 27 C -0.094 4.094 28 C -0.205 4.205 29 C -0.203 4.203 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.051 0.949 33 H 0.066 0.934 34 H 0.057 0.943 35 H 0.073 0.927 36 H 0.067 0.933 37 H 0.079 0.921 38 H 0.066 0.934 39 H 0.076 0.924 40 H 0.081 0.919 41 H 0.248 0.752 42 H 0.154 0.846 43 H 0.153 0.847 44 H 0.170 0.830 45 H 0.173 0.827 46 H 0.102 0.898 47 H 0.073 0.927 48 H 0.076 0.924 49 H 0.078 0.922 50 H 0.073 0.927 51 H 0.076 0.924 52 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -12.570 3.870 7.701 15.241 hybrid contribution 1.155 -0.367 -1.079 1.622 sum -11.416 3.504 6.622 13.654 Atomic orbital electron populations 1.22432 0.98829 0.99331 1.02076 1.21114 0.92539 0.87159 0.98674 1.44165 1.75553 1.11021 1.01623 1.18727 1.33361 0.98182 0.89597 0.90404 1.25529 0.96538 0.98341 0.95982 1.69749 1.44941 1.38751 1.01476 0.86645 0.77623 0.84589 0.77950 1.21687 1.23587 1.19396 1.20742 0.90794 0.96906 0.86490 0.90348 1.22200 1.00428 1.00406 0.99048 1.21992 0.89485 0.97757 0.92793 1.45996 1.09328 1.61057 1.18916 1.20218 0.82830 0.79858 0.86566 1.90648 1.79067 1.50540 1.22689 1.20333 0.95051 0.95673 0.97036 0.88476 1.20368 0.99525 0.98132 0.94152 1.21545 0.96216 0.97929 0.93115 1.22120 0.98681 0.96567 1.01507 1.22761 0.96616 0.96803 0.90265 1.67721 1.19366 1.23882 1.08302 1.22696 0.91534 0.89623 1.00534 1.20978 0.95093 0.96816 0.96475 1.21853 1.00364 0.98233 1.00074 1.21849 0.98269 1.00412 0.99730 0.92474 0.92862 0.94923 0.93409 0.94338 0.92679 0.93262 0.92121 0.93364 0.92448 0.91890 0.75215 0.84568 0.84720 0.83036 0.82671 0.89754 0.92661 0.92405 0.92199 0.92677 0.92444 0.92527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.25 9.54 37.16 0.35 -2.90 16 2 C 0.13 2.72 4.44 -4.04 -0.02 2.70 16 3 N -0.60 -12.65 1.51 -165.65 -0.25 -12.90 16 4 C -0.27 -6.75 9.64 -15.06 -0.15 -6.89 16 5 H 0.08 2.06 8.06 -52.49 -0.42 1.64 16 6 C 0.04 1.00 5.45 -17.43 -0.10 0.90 16 7 N -0.91 -26.23 13.97 55.49 0.78 -25.45 16 8 Si 0.90 21.93 24.62 -169.99 -4.18 17.74 16 9 H -0.29 -7.00 6.71 56.52 0.38 -6.62 16 10 H -0.31 -7.70 7.11 56.52 0.40 -7.30 16 11 H -0.27 -6.35 6.93 56.52 0.39 -5.96 16 12 C 0.16 2.79 2.88 -67.93 -0.20 2.59 16 13 H 0.08 1.40 7.89 -51.93 -0.41 0.99 16 14 C -0.16 -2.61 9.17 37.16 0.34 -2.27 16 15 C 0.11 1.70 4.29 -4.04 -0.02 1.68 16 16 N -0.70 -11.09 4.00 -60.30 -0.24 -11.33 16 17 C 0.52 7.94 5.18 -10.99 -0.06 7.88 16 18 O -0.55 -9.74 15.43 5.56 0.09 -9.65 16 19 C -0.06 -0.73 1.97 -92.93 -0.18 -0.92 16 20 H 0.10 1.10 7.93 -51.93 -0.41 0.69 16 21 C -0.12 -1.56 3.35 -104.48 -0.35 -1.91 16 22 C -0.06 -0.77 9.81 -39.28 -0.39 -1.15 16 23 C -0.17 -1.98 10.11 -39.44 -0.40 -2.38 16 24 C 0.09 1.15 11.18 -17.55 -0.20 0.96 16 25 N -0.48 -7.12 10.36 -13.25 -0.14 -7.26 16 26 C 0.11 1.63 10.03 -17.55 -0.18 1.46 16 27 C -0.07 -0.83 2.01 -90.62 -0.18 -1.01 16 28 C -0.15 -1.56 9.05 37.16 0.34 -1.22 16 29 C -0.15 -1.38 8.90 37.16 0.33 -1.05 16 30 H 0.06 1.08 4.33 -51.93 -0.22 0.85 16 31 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 32 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.05 1.11 2.81 -51.92 -0.15 0.97 16 34 H 0.04 0.75 6.43 -51.93 -0.33 0.42 16 35 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 36 H 0.05 0.79 6.67 -51.93 -0.35 0.45 16 37 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 38 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.06 1.10 6.43 -51.93 -0.33 0.77 16 41 H 0.41 6.80 7.90 -40.82 -0.32 6.48 16 42 H 0.14 1.48 8.00 -52.49 -0.42 1.06 16 43 H 0.13 1.27 8.06 -52.48 -0.42 0.84 16 44 H 0.15 1.47 8.06 -52.48 -0.42 1.05 16 45 H 0.16 2.29 7.19 -52.49 -0.38 1.92 16 46 H 0.08 1.05 7.13 -51.93 -0.37 0.67 16 47 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 48 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 49 H 0.06 0.74 6.97 -51.93 -0.36 0.37 16 50 H 0.05 0.56 7.12 -51.93 -0.37 0.19 16 51 H 0.06 0.49 8.14 -51.92 -0.42 0.06 16 52 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 LS Contribution 400.20 15.07 6.03 6.03 Total: -1.00 -29.71 400.20 -7.63 -37.34 By element: Atomic # 1 Polarization: 17.68 SS G_CDS: -8.67 Total: 9.01 kcal Atomic # 6 Polarization: -2.49 SS G_CDS: -1.04 Total: -3.53 kcal Atomic # 7 Polarization: -57.09 SS G_CDS: 0.15 Total: -56.94 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: 0.09 Total: -9.65 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.18 Total: 17.74 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -29.71 -7.63 -37.34 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156020694.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.547 kcal (2) G-P(sol) polarization free energy of solvation -29.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.341 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds