Wall clock time and date at job start Tue Mar 31 2020 18:32:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46503 * 109.47025 * 2 1 4 4 C 1.36929 * 120.00240 * 267.49585 * 3 2 1 5 5 H 1.08001 * 119.99800 * 138.73739 * 4 3 2 6 6 C 1.38819 * 120.00329 * 318.74089 * 4 3 2 7 7 N 1.31617 * 120.00120 * 170.47105 * 6 4 3 8 8 Si 1.86804 * 119.99534 * 350.47104 * 6 4 3 9 9 H 1.48496 * 109.47093 * 90.91791 * 8 6 4 10 10 H 1.48506 * 109.46706 * 210.91548 * 8 6 4 11 11 H 1.48492 * 109.47131 * 330.91584 * 8 6 4 12 12 C 1.46504 * 119.99510 * 87.50324 * 3 2 1 13 13 H 1.09003 * 109.46842 * 179.97438 * 12 3 2 14 14 C 1.52997 * 109.47421 * 59.99503 * 12 3 2 15 15 C 1.53008 * 109.46756 * 299.99391 * 12 3 2 16 16 N 1.46495 * 109.47243 * 305.00519 * 15 12 3 17 17 C 1.34777 * 119.99991 * 180.02562 * 16 15 12 18 18 O 1.21276 * 119.99687 * 354.56950 * 17 16 15 19 19 C 1.50696 * 119.99955 * 174.84483 * 17 16 15 20 20 H 1.09002 * 109.47235 * 334.16188 * 19 17 16 21 21 C 1.50696 * 109.47486 * 94.16120 * 19 17 16 22 22 C 1.38673 * 120.42395 * 239.72105 * 21 19 17 23 23 C 1.38627 * 118.42041 * 179.78368 * 22 21 19 24 24 C 1.38227 * 119.15973 * 0.51248 * 23 22 21 25 25 N 1.31856 * 120.76505 * 359.72464 * 24 23 22 26 26 C 1.31878 * 121.72579 * 0.02562 * 25 24 23 27 27 C 1.53003 * 109.47015 * 214.16710 * 19 17 16 28 28 C 1.53000 * 109.47312 * 63.45675 * 27 19 17 29 29 C 1.53005 * 109.46957 * 183.45646 * 27 19 17 30 30 H 1.08996 * 109.46972 * 299.99930 * 1 2 3 31 31 H 1.09003 * 109.47221 * 59.99939 * 1 2 3 32 32 H 1.09001 * 109.47066 * 179.97438 * 1 2 3 33 33 H 1.09009 * 109.47097 * 240.00261 * 2 1 3 34 34 H 1.08994 * 109.47349 * 120.00183 * 2 1 3 35 35 H 0.97001 * 119.99809 * 180.02562 * 7 6 4 36 36 H 1.08991 * 109.47402 * 299.99580 * 14 12 3 37 37 H 1.09001 * 109.47013 * 60.00074 * 14 12 3 38 38 H 1.09005 * 109.46775 * 179.97438 * 14 12 3 39 39 H 1.08999 * 109.46842 * 185.00512 * 15 12 3 40 40 H 1.08998 * 109.46884 * 65.00284 * 15 12 3 41 41 H 0.97010 * 120.00169 * 359.97438 * 16 15 12 42 42 H 1.07999 * 120.78509 * 0.02562 * 22 21 19 43 43 H 1.08003 * 120.41531 * 180.22102 * 23 22 21 44 44 H 1.08007 * 119.61503 * 179.75127 * 24 23 22 45 45 H 1.07998 * 119.61810 * 179.97438 * 26 25 24 46 46 H 1.08997 * 109.47082 * 303.44949 * 27 19 17 47 47 H 1.09000 * 109.47171 * 64.34267 * 28 27 19 48 48 H 1.09000 * 109.46723 * 184.34821 * 28 27 19 49 49 H 1.09002 * 109.46878 * 304.34168 * 28 27 19 50 50 H 1.08996 * 109.47314 * 59.99986 * 29 27 19 51 51 H 1.09008 * 109.46642 * 179.97438 * 29 27 19 52 52 H 1.08996 * 109.47045 * 299.99196 * 29 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2954 2.0095 -1.1847 5 1 2.0121 3.0419 -1.3276 6 6 2.9403 1.3196 -2.2021 7 7 3.0402 1.8554 -3.4001 8 14 3.6664 -0.3694 -1.8707 9 1 2.6523 -1.4117 -2.1708 10 1 4.8573 -0.5742 -2.7340 11 1 4.0670 -0.4647 -0.4440 12 6 2.2103 2.0902 1.2676 13 1 2.5761 3.0976 1.0687 14 6 3.2307 1.3373 2.1236 15 6 0.8773 2.1694 2.0146 16 7 -0.1320 2.7838 1.1486 17 6 -1.3904 2.9578 1.5988 18 8 -1.7131 2.5180 2.6819 19 6 -2.3980 3.6936 0.7536 20 1 -1.8790 4.3801 0.0846 21 6 -3.1906 2.7029 -0.0596 22 6 -3.1830 2.7657 -1.4449 23 6 -3.9233 1.8309 -2.1518 24 6 -4.6480 0.8807 -1.4571 25 7 -4.6357 0.8540 -0.1388 26 6 -3.9392 1.7242 0.5660 27 6 -3.3447 4.4829 1.6600 28 6 -2.5522 5.5470 2.4220 29 6 -4.4198 5.1605 0.8079 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8901 34 1 1.8933 -0.5138 0.8899 35 1 3.4906 1.3731 -4.1111 36 1 2.8653 0.3299 2.3226 37 1 4.1803 1.2809 1.5914 38 1 3.3738 1.8651 3.0666 39 1 1.0002 2.7727 2.9141 40 1 0.5559 1.1654 2.2915 41 1 0.1055 3.0660 0.2514 42 1 -2.6107 3.5225 -1.9608 43 1 -3.9375 1.8479 -3.2316 44 1 -5.2306 0.1513 -2.0004 45 1 -3.9539 1.6713 1.6445 46 1 -3.8179 3.8045 2.3699 47 1 -2.1429 6.2699 1.7163 48 1 -3.2114 6.0576 3.1240 49 1 -1.7378 5.0715 2.9686 50 1 -4.9844 4.4025 0.2651 51 1 -5.0945 5.7225 1.4538 52 1 -3.9467 5.8390 0.0981 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001156020694.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:55 Heat of formation + Delta-G solvation = -6.437406 kcal Electronic energy + Delta-G solvation = -31067.766578 eV Core-core repulsion = 27260.011364 eV Total energy + Delta-G solvation = -3807.755213 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.80309 -40.46058 -38.97949 -37.01327 -35.42286 -33.93894 -33.49656 -32.86785 -32.40107 -30.55447 -29.00467 -27.92159 -26.72056 -25.50768 -24.60329 -24.14789 -23.47781 -21.90796 -21.04387 -20.38857 -18.87617 -18.25362 -18.10600 -17.63829 -17.13826 -16.92565 -16.65514 -16.26513 -15.80389 -15.40718 -15.19484 -14.95203 -14.60163 -14.53201 -14.46422 -14.32337 -14.11540 -13.97952 -13.73652 -13.56151 -13.50745 -13.32966 -13.02507 -12.94100 -12.84708 -12.76431 -12.70948 -12.50897 -12.13867 -12.07998 -11.84307 -11.78440 -11.61832 -11.40374 -11.24491 -10.99860 -10.62114 -10.60634 -10.41022 -9.92272 -9.83545 -8.72576 -8.12013 -5.60566 0.12204 0.33927 1.31110 1.42143 1.50815 1.69358 2.33225 2.43701 2.85793 3.16783 3.26407 3.46821 3.68637 3.72037 3.82733 4.00739 4.02775 4.06677 4.11738 4.19832 4.21727 4.37361 4.42235 4.48064 4.51333 4.62027 4.64821 4.70735 4.71432 4.73663 4.81109 4.82286 4.83272 4.85506 4.99522 5.01189 5.04021 5.12007 5.19286 5.22261 5.27772 5.28429 5.34468 5.38553 5.44871 5.46864 5.63979 5.76430 6.01438 6.24025 6.67223 7.01004 7.01998 7.31171 7.64832 8.10394 9.05095 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.011802 B = 0.004526 C = 0.003874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2371.976616 B = 6185.580114 C = 7226.520640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.127 3.873 3 N -0.605 5.605 4 C -0.239 4.239 5 H 0.059 0.941 6 C -0.016 4.016 7 N -0.952 5.952 8 Si 0.947 3.053 9 H -0.289 1.289 10 H -0.321 1.321 11 H -0.256 1.256 12 C 0.158 3.842 13 H 0.076 0.924 14 C -0.156 4.156 15 C 0.114 3.886 16 N -0.705 5.705 17 C 0.522 3.478 18 O -0.575 6.575 19 C -0.053 4.053 20 H 0.111 0.889 21 C -0.120 4.120 22 C -0.070 4.070 23 C -0.167 4.167 24 C 0.084 3.916 25 N -0.509 5.509 26 C 0.098 3.902 27 C -0.071 4.071 28 C -0.144 4.144 29 C -0.138 4.138 30 H 0.061 0.939 31 H 0.034 0.966 32 H 0.043 0.957 33 H 0.028 0.972 34 H 0.057 0.943 35 H 0.259 0.741 36 H 0.050 0.950 37 H 0.045 0.955 38 H 0.079 0.921 39 H 0.073 0.927 40 H 0.053 0.947 41 H 0.408 0.592 42 H 0.152 0.848 43 H 0.161 0.839 44 H 0.178 0.822 45 H 0.143 0.857 46 H 0.067 0.933 47 H 0.067 0.933 48 H 0.069 0.931 49 H 0.038 0.962 50 H 0.045 0.955 51 H 0.068 0.932 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.529 5.120 7.475 15.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.002 3.998 3 N -0.329 5.329 4 C -0.369 4.369 5 H 0.077 0.923 6 C -0.213 4.213 7 N -0.597 5.597 8 Si 0.780 3.220 9 H -0.217 1.217 10 H -0.251 1.251 11 H -0.180 1.180 12 C 0.052 3.948 13 H 0.094 0.906 14 C -0.215 4.215 15 C -0.011 4.011 16 N -0.355 5.355 17 C 0.308 3.692 18 O -0.456 6.456 19 C -0.075 4.075 20 H 0.129 0.871 21 C -0.123 4.123 22 C -0.096 4.096 23 C -0.186 4.186 24 C -0.073 4.073 25 N -0.218 5.218 26 C -0.059 4.059 27 C -0.090 4.090 28 C -0.202 4.202 29 C -0.195 4.195 30 H 0.080 0.920 31 H 0.053 0.947 32 H 0.062 0.938 33 H 0.046 0.954 34 H 0.075 0.925 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.064 0.936 38 H 0.098 0.902 39 H 0.091 0.909 40 H 0.071 0.929 41 H 0.244 0.756 42 H 0.169 0.831 43 H 0.178 0.822 44 H 0.195 0.805 45 H 0.160 0.840 46 H 0.085 0.915 47 H 0.086 0.914 48 H 0.088 0.912 49 H 0.058 0.942 50 H 0.064 0.936 51 H 0.087 0.913 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -13.139 4.168 8.554 16.222 hybrid contribution 1.249 -0.419 -1.268 1.828 sum -11.890 3.749 7.286 14.440 Atomic orbital electron populations 1.22266 0.97732 0.99866 1.01320 1.21141 0.93347 0.86804 0.98483 1.44208 1.75747 1.11144 1.01779 1.18680 1.30542 0.97197 0.90515 0.92325 1.26040 0.98009 1.01146 0.96062 1.69862 1.47258 1.40238 1.02379 0.85852 0.76372 0.81741 0.78036 1.21721 1.25083 1.17994 1.20852 0.92135 0.96587 0.85223 0.90570 1.22120 0.98813 1.00657 0.99914 1.21846 0.88578 0.97611 0.93067 1.46039 1.09641 1.61117 1.18662 1.20638 0.82825 0.79312 0.86385 1.90636 1.79409 1.51585 1.23932 1.20358 0.94594 0.95558 0.97006 0.87115 1.20362 0.99380 0.97917 0.94611 1.21830 0.96402 0.98511 0.92884 1.22450 0.97604 0.95692 1.02853 1.23240 0.96825 0.97512 0.89703 1.67690 1.20054 1.24466 1.09553 1.22581 0.92610 0.90564 1.00142 1.20948 0.95226 0.96609 0.96203 1.21825 0.99860 0.98122 1.00346 1.21786 0.97785 1.00223 0.99750 0.92044 0.94658 0.93785 0.95447 0.92481 0.93219 0.93083 0.93618 0.90196 0.90916 0.92853 0.75615 0.83077 0.82159 0.80535 0.83986 0.91470 0.91402 0.91153 0.94245 0.93607 0.91252 0.91406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.71 9.54 71.98 0.69 -5.02 16 2 C 0.13 5.08 4.44 86.38 0.38 5.47 16 3 N -0.61 -24.69 1.51 -678.00 -1.03 -25.72 16 4 C -0.24 -11.88 9.64 84.04 0.81 -11.07 16 5 H 0.06 3.13 8.06 -2.91 -0.02 3.10 16 6 C -0.02 -0.89 5.45 84.86 0.46 -0.42 16 7 N -0.95 -55.93 13.97 21.65 0.30 -55.63 16 8 Si 0.95 45.18 24.62 68.60 1.69 46.87 16 9 H -0.29 -13.62 6.71 99.48 0.67 -12.95 16 10 H -0.32 -15.90 7.11 99.48 0.71 -15.19 16 11 H -0.26 -11.45 6.93 99.48 0.69 -10.76 16 12 C 0.16 5.27 2.88 44.99 0.13 5.40 16 13 H 0.08 2.59 7.89 -2.39 -0.02 2.57 16 14 C -0.16 -4.61 9.17 71.98 0.66 -3.95 16 15 C 0.11 3.49 4.29 86.38 0.37 3.86 16 16 N -0.70 -21.47 4.00 -463.07 -1.85 -23.32 16 17 C 0.52 15.53 5.18 87.66 0.45 15.99 16 18 O -0.58 -20.14 15.43 -3.02 -0.05 -20.18 16 19 C -0.05 -1.27 1.97 -12.29 -0.02 -1.30 16 20 H 0.11 2.34 7.93 -2.39 -0.02 2.32 16 21 C -0.12 -3.06 3.35 -19.77 -0.07 -3.13 16 22 C -0.07 -1.63 9.81 22.47 0.22 -1.41 16 23 C -0.17 -3.59 10.11 22.36 0.23 -3.36 16 24 C 0.08 1.97 11.18 84.69 0.95 2.92 16 25 N -0.51 -14.76 10.36 -195.84 -2.03 -16.78 16 26 C 0.10 2.81 10.03 84.67 0.85 3.66 16 27 C -0.07 -1.50 2.01 -10.79 -0.02 -1.53 16 28 C -0.14 -2.83 9.05 71.98 0.65 -2.18 16 29 C -0.14 -2.38 8.90 71.98 0.64 -1.74 16 30 H 0.06 2.24 4.33 -2.39 -0.01 2.23 16 31 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.03 1.24 2.81 -2.38 -0.01 1.23 16 34 H 0.06 2.09 6.43 -2.39 -0.02 2.07 16 35 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 36 H 0.05 1.49 6.67 -2.39 -0.02 1.47 16 37 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.08 1.87 8.14 -2.38 -0.02 1.85 16 39 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.05 1.76 6.43 -2.39 -0.02 1.74 16 41 H 0.41 13.12 7.90 -92.70 -0.73 12.39 16 42 H 0.15 2.98 8.00 -2.91 -0.02 2.96 16 43 H 0.16 2.57 8.06 -2.91 -0.02 2.55 16 44 H 0.18 3.08 8.06 -2.91 -0.02 3.06 16 45 H 0.14 4.35 7.19 -2.91 -0.02 4.33 16 46 H 0.07 1.67 7.13 -2.39 -0.02 1.65 16 47 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 48 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 49 H 0.04 0.93 6.97 -2.39 -0.02 0.91 16 50 H 0.04 0.88 7.12 -2.39 -0.02 0.86 16 51 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 52 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 Total: -1.00 -64.03 400.20 4.53 -59.50 By element: Atomic # 1 Polarization: 32.96 SS G_CDS: 0.12 Total: 33.08 kcal Atomic # 6 Polarization: -5.19 SS G_CDS: 7.38 Total: 2.19 kcal Atomic # 7 Polarization: -116.85 SS G_CDS: -4.61 Total: -121.45 kcal Atomic # 8 Polarization: -20.14 SS G_CDS: -0.05 Total: -20.18 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 1.69 Total: 46.87 kcal Total: -64.03 4.53 -59.50 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156020694.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.058 kcal (2) G-P(sol) polarization free energy of solvation -64.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds