Wall clock time and date at job start Tue Mar 31 2020 18:30:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46494 * 109.47046 * 2 1 4 4 C 1.36936 * 120.00146 * 274.57718 * 3 2 1 5 5 H 1.08002 * 120.00483 * 140.38818 * 4 3 2 6 6 C 1.38816 * 119.99573 * 320.38679 * 4 3 2 7 7 N 1.31625 * 119.99906 * 156.49028 * 6 4 3 8 8 Si 1.86793 * 120.00321 * 336.48612 * 6 4 3 9 9 H 1.48505 * 109.47102 * 95.30491 * 8 6 4 10 10 H 1.48500 * 109.47342 * 215.30118 * 8 6 4 11 11 H 1.48495 * 109.47324 * 335.30573 * 8 6 4 12 12 C 1.46504 * 119.99895 * 94.57855 * 3 2 1 13 13 H 1.09005 * 109.46543 * 179.97438 * 12 3 2 14 14 C 1.53000 * 109.47058 * 60.00106 * 12 3 2 15 15 C 1.52999 * 109.47226 * 299.99626 * 12 3 2 16 16 N 1.46497 * 109.47047 * 305.00551 * 15 12 3 17 17 C 1.34776 * 120.00176 * 180.02562 * 16 15 12 18 18 O 1.21289 * 119.99895 * 359.97438 * 17 16 15 19 19 C 1.50700 * 120.00283 * 180.02562 * 17 16 15 20 20 N 1.46501 * 109.47118 * 179.97438 * 19 17 16 21 21 C 1.46506 * 120.00002 * 269.99688 * 20 19 17 22 22 C 1.52998 * 109.46773 * 270.00222 * 21 20 19 23 23 C 1.39677 * 120.00397 * 89.99567 * 20 19 17 24 24 C 1.38908 * 120.07513 * 180.02562 * 23 20 19 25 25 C 1.38107 * 119.92250 * 179.97438 * 24 23 20 26 26 C 1.38282 * 120.07607 * 359.97438 * 25 24 23 27 27 C 1.38285 * 120.14803 * 0.02562 * 26 25 24 28 28 C 1.38104 * 120.07750 * 359.97438 * 27 26 25 29 29 H 1.09004 * 109.47288 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47236 * 299.99746 * 1 2 3 31 31 H 1.08997 * 109.47251 * 60.00255 * 1 2 3 32 32 H 1.09003 * 109.46747 * 239.99668 * 2 1 3 33 33 H 1.08999 * 109.47131 * 120.00270 * 2 1 3 34 34 H 0.96991 * 120.00099 * 179.97438 * 7 6 4 35 35 H 1.08997 * 109.47190 * 59.99880 * 14 12 3 36 36 H 1.08998 * 109.46787 * 179.97438 * 14 12 3 37 37 H 1.08994 * 109.46861 * 299.99376 * 14 12 3 38 38 H 1.09002 * 109.47194 * 185.00181 * 15 12 3 39 39 H 1.09004 * 109.46530 * 65.00219 * 15 12 3 40 40 H 0.97000 * 120.00655 * 359.97438 * 16 15 12 41 41 H 1.08989 * 109.47278 * 59.99430 * 19 17 16 42 42 H 1.09001 * 109.46619 * 299.98989 * 19 17 16 43 43 H 1.09002 * 109.46486 * 29.99585 * 21 20 19 44 44 H 1.08995 * 109.47028 * 149.99837 * 21 20 19 45 45 H 1.08997 * 109.47106 * 299.99473 * 22 21 20 46 46 H 1.08995 * 109.47658 * 60.00001 * 22 21 20 47 47 H 1.09003 * 109.46597 * 179.97438 * 22 21 20 48 48 H 1.07996 * 120.03932 * 359.70349 * 24 23 20 49 49 H 1.08003 * 119.95839 * 179.97438 * 25 24 23 50 50 H 1.08004 * 119.92448 * 180.02562 * 26 25 24 51 51 H 1.08002 * 119.96251 * 180.02562 * 27 26 25 52 52 H 1.07997 * 120.03577 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1573 2.0583 -1.1821 5 1 1.8868 3.1022 -1.2416 6 6 2.6460 1.4028 -2.3040 7 7 2.3639 1.8573 -3.5067 8 14 3.7038 -0.1240 -2.1070 9 1 2.8508 -1.3347 -2.2162 10 1 4.7387 -0.1500 -3.1717 11 1 4.3629 -0.1013 -0.7765 12 6 2.3579 2.0380 1.2647 13 1 2.7006 3.0536 1.0660 14 6 3.4692 1.2531 1.9647 15 6 1.1211 2.0833 2.1641 16 7 0.0194 2.7303 1.4472 17 6 -1.1777 2.8828 2.0473 18 8 -1.3431 2.4840 3.1808 19 6 -2.3111 3.5478 1.3097 20 7 -3.4954 3.5913 2.1709 21 6 -4.4563 2.4855 2.1515 22 6 -5.5292 2.7607 1.0960 23 6 -3.7086 4.6869 3.0106 24 6 -4.8307 4.7295 3.8283 25 6 -5.0380 5.8141 4.6577 26 6 -4.1298 6.8567 4.6752 27 6 -3.0117 6.8175 3.8625 28 6 -2.7982 5.7360 3.0307 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 2.7056 1.3996 -4.2905 35 1 4.3503 1.2209 1.3239 36 1 3.7221 1.7421 2.9054 37 1 3.1269 0.2375 2.1633 38 1 1.3491 2.6495 3.0673 39 1 0.8316 1.0680 2.4352 40 1 0.1517 3.0496 0.5409 41 1 -2.5393 2.9810 0.4071 42 1 -2.0217 4.5629 1.0379 43 1 -3.9377 1.5579 1.9093 44 1 -4.9253 2.3945 3.1312 45 1 -6.0477 3.6883 1.3383 46 1 -5.0602 2.8517 0.1163 47 1 -6.2438 1.9377 1.0813 48 1 -5.5424 3.9174 3.8122 49 1 -5.9105 5.8480 5.2934 50 1 -4.2942 7.7036 5.3251 51 1 -2.3041 7.6333 3.8789 52 1 -1.9250 5.7062 2.3959 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157068780.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:48 Heat of formation + Delta-G solvation = 24.031589 kcal Electronic energy + Delta-G solvation = -29969.838441 eV Core-core repulsion = 26163.404463 eV Total energy + Delta-G solvation = -3806.433979 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.05982 -38.94939 -37.29103 -36.22187 -33.87928 -32.23386 -31.86377 -31.26194 -30.68104 -29.79982 -28.69778 -27.07297 -25.20452 -23.69663 -23.41259 -22.44891 -22.09363 -20.87456 -19.80995 -19.23691 -17.80864 -17.00744 -16.79883 -16.23953 -15.76732 -15.65727 -15.10841 -15.01148 -14.59028 -14.32615 -14.21305 -13.84500 -13.55904 -13.15433 -13.12642 -13.00703 -12.86323 -12.76560 -12.53011 -12.48610 -12.33294 -12.13137 -11.86489 -11.65153 -11.41524 -11.37332 -11.26816 -11.16754 -11.07396 -10.77283 -10.72956 -10.43534 -10.21634 -10.02968 -9.78808 -9.57668 -9.38757 -8.87938 -8.57404 -8.54847 -7.28245 -6.91657 -6.11332 -3.54156 1.48376 1.66199 2.91812 2.95376 3.26414 3.41819 3.46889 3.70960 3.98185 4.45045 4.75671 4.82582 4.85623 5.01197 5.05974 5.13174 5.18518 5.20166 5.22849 5.33336 5.37546 5.43499 5.48633 5.54280 5.63725 5.73318 5.77087 5.83079 5.91785 5.95274 6.02372 6.04295 6.08332 6.15306 6.20662 6.29723 6.30762 6.34193 6.51801 6.55762 6.66526 6.66781 6.73704 6.83129 6.88078 6.94820 7.07713 7.20403 7.50232 7.96262 7.99904 8.25407 8.61474 8.89222 9.60647 10.03647 11.03551 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.017318 B = 0.002968 C = 0.002837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.391201 B = 9431.795909 C = 9868.591031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.134 3.866 3 N -0.598 5.598 4 C -0.274 4.274 5 H 0.077 0.923 6 C 0.043 3.957 7 N -0.895 5.895 8 Si 0.877 3.123 9 H -0.287 1.287 10 H -0.303 1.303 11 H -0.267 1.267 12 C 0.155 3.845 13 H 0.078 0.922 14 C -0.162 4.162 15 C 0.111 3.889 16 N -0.706 5.706 17 C 0.485 3.515 18 O -0.544 6.544 19 C 0.103 3.897 20 N -0.604 5.604 21 C 0.123 3.877 22 C -0.172 4.172 23 C 0.230 3.770 24 C -0.197 4.197 25 C -0.075 4.075 26 C -0.186 4.186 27 C -0.072 4.072 28 C -0.195 4.195 29 H 0.032 0.968 30 H 0.051 0.949 31 H 0.058 0.942 32 H 0.047 0.953 33 H 0.038 0.962 34 H 0.264 0.736 35 H 0.060 0.940 36 H 0.047 0.953 37 H 0.048 0.952 38 H 0.056 0.944 39 H 0.058 0.942 40 H 0.411 0.589 41 H 0.105 0.895 42 H 0.103 0.897 43 H 0.074 0.926 44 H 0.075 0.925 45 H 0.058 0.942 46 H 0.058 0.942 47 H 0.063 0.937 48 H 0.120 0.880 49 H 0.116 0.884 50 H 0.114 0.886 51 H 0.118 0.882 52 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.411 4.746 11.660 17.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.009 3.991 3 N -0.321 5.321 4 C -0.403 4.403 5 H 0.095 0.905 6 C -0.158 4.158 7 N -0.535 5.535 8 Si 0.707 3.293 9 H -0.215 1.215 10 H -0.232 1.232 11 H -0.192 1.192 12 C 0.048 3.952 13 H 0.096 0.904 14 C -0.222 4.222 15 C -0.015 4.015 16 N -0.358 5.358 17 C 0.268 3.732 18 O -0.422 6.422 19 C -0.025 4.025 20 N -0.313 5.313 21 C 0.000 4.000 22 C -0.231 4.231 23 C 0.129 3.871 24 C -0.220 4.220 25 C -0.094 4.094 26 C -0.206 4.206 27 C -0.091 4.091 28 C -0.217 4.217 29 H 0.051 0.949 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.065 0.935 33 H 0.057 0.943 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.074 0.926 39 H 0.077 0.923 40 H 0.248 0.752 41 H 0.123 0.877 42 H 0.121 0.879 43 H 0.092 0.908 44 H 0.093 0.907 45 H 0.077 0.923 46 H 0.077 0.923 47 H 0.082 0.918 48 H 0.138 0.862 49 H 0.134 0.866 50 H 0.132 0.868 51 H 0.136 0.864 52 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -12.467 4.297 12.148 17.929 hybrid contribution 0.863 -0.960 -0.562 1.408 sum -11.604 3.337 11.586 16.734 Atomic orbital electron populations 1.22344 0.98965 0.99223 1.02004 1.21025 0.92636 0.86729 0.98724 1.44218 1.74538 1.11368 1.01993 1.18674 1.39378 0.96753 0.85468 0.90512 1.25498 0.97316 0.97803 0.95217 1.69874 1.44341 1.41777 0.97487 0.86941 0.81262 0.83527 0.77534 1.21535 1.23152 1.19206 1.20782 0.90646 0.97286 0.86507 0.90427 1.22236 0.99976 1.00351 0.99640 1.21886 0.87712 0.97071 0.94849 1.45978 1.10819 1.59853 1.19170 1.21302 0.84203 0.80231 0.87428 1.90672 1.82815 1.50160 1.18512 1.21308 0.84950 1.02874 0.93355 1.46090 1.22745 1.19071 1.43396 1.21364 0.90054 0.88997 0.99559 1.22246 0.98992 1.02033 0.99790 1.17784 0.93348 0.86732 0.89266 1.20633 0.99226 1.00754 1.01339 1.20834 0.98339 0.93174 0.97071 1.20841 0.96693 1.00018 1.03062 1.20857 0.96691 0.96948 0.94608 1.20674 1.00921 0.95354 1.04755 0.94883 0.93022 0.92328 0.93534 0.94329 0.92667 0.92136 0.93416 0.93286 0.92603 0.92325 0.75215 0.87684 0.87911 0.90805 0.90680 0.92326 0.92283 0.91806 0.86234 0.86560 0.86825 0.86437 0.86424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.04 9.83 37.16 0.37 -2.68 16 2 C 0.13 2.71 4.70 -4.05 -0.02 2.69 16 3 N -0.60 -12.39 1.42 -165.66 -0.23 -12.63 16 4 C -0.27 -6.76 9.50 -15.06 -0.14 -6.90 16 5 H 0.08 2.00 8.06 -52.49 -0.42 1.58 16 6 C 0.04 1.15 5.29 -17.43 -0.09 1.06 16 7 N -0.89 -25.46 13.97 55.49 0.78 -24.68 16 8 Si 0.88 21.18 25.23 -169.99 -4.29 16.89 16 9 H -0.29 -6.89 6.66 56.52 0.38 -6.51 16 10 H -0.30 -7.56 7.11 56.52 0.40 -7.16 16 11 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 12 C 0.16 2.72 2.87 -67.93 -0.19 2.53 16 13 H 0.08 1.39 7.89 -51.93 -0.41 0.98 16 14 C -0.16 -2.64 9.18 37.16 0.34 -2.30 16 15 C 0.11 1.80 4.33 -4.04 -0.02 1.78 16 16 N -0.71 -11.01 3.99 -60.29 -0.24 -11.25 16 17 C 0.48 7.54 7.66 -10.99 -0.08 7.45 16 18 O -0.54 -10.34 16.43 5.55 0.09 -10.25 16 19 C 0.10 1.28 5.64 -5.19 -0.03 1.25 16 20 N -0.60 -7.60 2.09 -173.12 -0.36 -7.97 16 21 C 0.12 1.34 5.88 -4.04 -0.02 1.32 16 22 C -0.17 -1.54 10.24 37.16 0.38 -1.16 16 23 C 0.23 3.05 6.55 -83.79 -0.55 2.50 16 24 C -0.20 -2.36 9.20 -39.38 -0.36 -2.73 16 25 C -0.08 -0.83 10.04 -39.61 -0.40 -1.22 16 26 C -0.19 -2.05 10.04 -39.55 -0.40 -2.45 16 27 C -0.07 -0.85 10.04 -39.61 -0.40 -1.25 16 28 C -0.19 -2.54 9.21 -39.38 -0.36 -2.90 16 29 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.05 0.91 4.89 -51.93 -0.25 0.66 16 31 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.05 1.05 3.44 -51.93 -0.18 0.87 16 33 H 0.04 0.72 6.43 -51.93 -0.33 0.39 16 34 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 35 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.05 0.78 6.66 -51.93 -0.35 0.44 16 38 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.06 1.02 6.96 -51.93 -0.36 0.66 16 40 H 0.41 6.57 7.89 -40.82 -0.32 6.25 16 41 H 0.11 1.18 8.07 -51.94 -0.42 0.77 16 42 H 0.10 1.15 6.20 -51.93 -0.32 0.83 16 43 H 0.07 0.85 8.07 -51.93 -0.42 0.43 16 44 H 0.07 0.79 6.20 -51.93 -0.32 0.47 16 45 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.12 1.26 6.15 -52.49 -0.32 0.93 16 49 H 0.12 0.99 8.06 -52.48 -0.42 0.56 16 50 H 0.11 1.01 8.06 -52.48 -0.42 0.58 16 51 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 52 H 0.12 1.48 6.14 -52.49 -0.32 1.16 16 LS Contribution 404.88 15.07 6.10 6.10 Total: -1.00 -29.99 404.88 -8.71 -38.70 By element: Atomic # 1 Polarization: 16.65 SS G_CDS: -8.57 Total: 8.08 kcal Atomic # 6 Polarization: -1.01 SS G_CDS: -1.98 Total: -2.99 kcal Atomic # 7 Polarization: -56.46 SS G_CDS: -0.06 Total: -56.52 kcal Atomic # 8 Polarization: -10.34 SS G_CDS: 0.09 Total: -10.25 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -4.29 Total: 16.89 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -29.99 -8.71 -38.70 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157068780.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.731 kcal (2) G-P(sol) polarization free energy of solvation -29.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.699 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds