Wall clock time and date at job start Tue Mar 31 2020 18:30:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46494 * 109.47046 * 2 1 4 4 C 1.36936 * 120.00146 * 274.57718 * 3 2 1 5 5 H 1.08002 * 120.00483 * 140.38818 * 4 3 2 6 6 C 1.38816 * 119.99573 * 320.38679 * 4 3 2 7 7 N 1.31625 * 119.99906 * 156.49028 * 6 4 3 8 8 Si 1.86793 * 120.00321 * 336.48612 * 6 4 3 9 9 H 1.48505 * 109.47102 * 95.30491 * 8 6 4 10 10 H 1.48500 * 109.47342 * 215.30118 * 8 6 4 11 11 H 1.48495 * 109.47324 * 335.30573 * 8 6 4 12 12 C 1.46504 * 119.99895 * 94.57855 * 3 2 1 13 13 H 1.09005 * 109.46543 * 179.97438 * 12 3 2 14 14 C 1.53000 * 109.47058 * 60.00106 * 12 3 2 15 15 C 1.52999 * 109.47226 * 299.99626 * 12 3 2 16 16 N 1.46497 * 109.47047 * 305.00551 * 15 12 3 17 17 C 1.34776 * 120.00176 * 180.02562 * 16 15 12 18 18 O 1.21289 * 119.99895 * 359.97438 * 17 16 15 19 19 C 1.50700 * 120.00283 * 180.02562 * 17 16 15 20 20 N 1.46501 * 109.47118 * 179.97438 * 19 17 16 21 21 C 1.46506 * 120.00002 * 269.99688 * 20 19 17 22 22 C 1.52998 * 109.46773 * 270.00222 * 21 20 19 23 23 C 1.39677 * 120.00397 * 89.99567 * 20 19 17 24 24 C 1.38908 * 120.07513 * 180.02562 * 23 20 19 25 25 C 1.38107 * 119.92250 * 179.97438 * 24 23 20 26 26 C 1.38282 * 120.07607 * 359.97438 * 25 24 23 27 27 C 1.38285 * 120.14803 * 0.02562 * 26 25 24 28 28 C 1.38104 * 120.07750 * 359.97438 * 27 26 25 29 29 H 1.09004 * 109.47288 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47236 * 299.99746 * 1 2 3 31 31 H 1.08997 * 109.47251 * 60.00255 * 1 2 3 32 32 H 1.09003 * 109.46747 * 239.99668 * 2 1 3 33 33 H 1.08999 * 109.47131 * 120.00270 * 2 1 3 34 34 H 0.96991 * 120.00099 * 179.97438 * 7 6 4 35 35 H 1.08997 * 109.47190 * 59.99880 * 14 12 3 36 36 H 1.08998 * 109.46787 * 179.97438 * 14 12 3 37 37 H 1.08994 * 109.46861 * 299.99376 * 14 12 3 38 38 H 1.09002 * 109.47194 * 185.00181 * 15 12 3 39 39 H 1.09004 * 109.46530 * 65.00219 * 15 12 3 40 40 H 0.97000 * 120.00655 * 359.97438 * 16 15 12 41 41 H 1.08989 * 109.47278 * 59.99430 * 19 17 16 42 42 H 1.09001 * 109.46619 * 299.98989 * 19 17 16 43 43 H 1.09002 * 109.46486 * 29.99585 * 21 20 19 44 44 H 1.08995 * 109.47028 * 149.99837 * 21 20 19 45 45 H 1.08997 * 109.47106 * 299.99473 * 22 21 20 46 46 H 1.08995 * 109.47658 * 60.00001 * 22 21 20 47 47 H 1.09003 * 109.46597 * 179.97438 * 22 21 20 48 48 H 1.07996 * 120.03932 * 359.70349 * 24 23 20 49 49 H 1.08003 * 119.95839 * 179.97438 * 25 24 23 50 50 H 1.08004 * 119.92448 * 180.02562 * 26 25 24 51 51 H 1.08002 * 119.96251 * 180.02562 * 27 26 25 52 52 H 1.07997 * 120.03577 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1573 2.0583 -1.1821 5 1 1.8868 3.1022 -1.2416 6 6 2.6460 1.4028 -2.3040 7 7 2.3639 1.8573 -3.5067 8 14 3.7038 -0.1240 -2.1070 9 1 2.8508 -1.3347 -2.2162 10 1 4.7387 -0.1500 -3.1717 11 1 4.3629 -0.1013 -0.7765 12 6 2.3579 2.0380 1.2647 13 1 2.7006 3.0536 1.0660 14 6 3.4692 1.2531 1.9647 15 6 1.1211 2.0833 2.1641 16 7 0.0194 2.7303 1.4472 17 6 -1.1777 2.8828 2.0473 18 8 -1.3431 2.4840 3.1808 19 6 -2.3111 3.5478 1.3097 20 7 -3.4954 3.5913 2.1709 21 6 -4.4563 2.4855 2.1515 22 6 -5.5292 2.7607 1.0960 23 6 -3.7086 4.6869 3.0106 24 6 -4.8307 4.7295 3.8283 25 6 -5.0380 5.8141 4.6577 26 6 -4.1298 6.8567 4.6752 27 6 -3.0117 6.8175 3.8625 28 6 -2.7982 5.7360 3.0307 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 2.7056 1.3996 -4.2905 35 1 4.3503 1.2209 1.3239 36 1 3.7221 1.7421 2.9054 37 1 3.1269 0.2375 2.1633 38 1 1.3491 2.6495 3.0673 39 1 0.8316 1.0680 2.4352 40 1 0.1517 3.0496 0.5409 41 1 -2.5393 2.9810 0.4071 42 1 -2.0217 4.5629 1.0379 43 1 -3.9377 1.5579 1.9093 44 1 -4.9253 2.3945 3.1312 45 1 -6.0477 3.6883 1.3383 46 1 -5.0602 2.8517 0.1163 47 1 -6.2438 1.9377 1.0813 48 1 -5.5424 3.9174 3.8122 49 1 -5.9105 5.8480 5.2934 50 1 -4.2942 7.7036 5.3251 51 1 -2.3041 7.6333 3.8789 52 1 -1.9250 5.7062 2.3959 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157068780.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:47 Heat of formation + Delta-G solvation = 8.826154 kcal Electronic energy + Delta-G solvation = -29970.497798 eV Core-core repulsion = 26163.404463 eV Total energy + Delta-G solvation = -3807.093336 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.14722 -40.07254 -38.77197 -37.19208 -35.38292 -33.91891 -32.96478 -32.65804 -31.54565 -30.82576 -30.33094 -28.11871 -26.38949 -25.51279 -24.29801 -23.97231 -23.01892 -21.88370 -21.05269 -20.66630 -18.85256 -18.67041 -18.04141 -17.56451 -17.30537 -16.63790 -16.39618 -16.19075 -15.87798 -15.37755 -15.32975 -14.88138 -14.86904 -14.54418 -14.51226 -14.37844 -14.10218 -13.98678 -13.90164 -13.69485 -13.44456 -13.31170 -12.98191 -12.90410 -12.80193 -12.69675 -12.61891 -12.55054 -12.19709 -12.13431 -11.98476 -11.79016 -11.59617 -11.40483 -11.34655 -11.25518 -10.54512 -10.52959 -9.89278 -9.76640 -8.71517 -8.20705 -8.15803 -5.52835 0.59563 0.76614 1.33286 1.44870 1.53902 1.71472 1.95763 2.46632 2.54870 3.07208 3.09786 3.34341 3.87483 3.93101 3.95017 4.04329 4.15958 4.24836 4.29031 4.29859 4.39909 4.41166 4.48555 4.52864 4.55960 4.66743 4.67381 4.69613 4.73105 4.77954 4.81363 4.85319 4.88581 4.95626 5.01486 5.08437 5.20618 5.21729 5.28265 5.34063 5.37452 5.41956 5.52312 5.64060 5.66037 5.79610 6.00333 6.03211 6.25460 6.27769 6.58450 6.72385 7.04922 7.35241 7.68176 8.13568 9.02794 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.017318 B = 0.002968 C = 0.002837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.391201 B = 9431.795909 C = 9868.591031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.129 3.871 3 N -0.603 5.603 4 C -0.245 4.245 5 H 0.057 0.943 6 C -0.008 4.008 7 N -0.941 5.941 8 Si 0.927 3.073 9 H -0.285 1.285 10 H -0.318 1.318 11 H -0.257 1.257 12 C 0.156 3.844 13 H 0.073 0.927 14 C -0.157 4.157 15 C 0.121 3.879 16 N -0.705 5.705 17 C 0.488 3.512 18 O -0.578 6.578 19 C 0.107 3.893 20 N -0.609 5.609 21 C 0.121 3.879 22 C -0.162 4.162 23 C 0.210 3.790 24 C -0.208 4.208 25 C -0.079 4.079 26 C -0.191 4.191 27 C -0.082 4.082 28 C -0.216 4.216 29 H 0.051 0.949 30 H 0.057 0.943 31 H 0.038 0.962 32 H 0.025 0.975 33 H 0.059 0.941 34 H 0.259 0.741 35 H 0.044 0.956 36 H 0.076 0.924 37 H 0.052 0.948 38 H 0.064 0.936 39 H 0.052 0.948 40 H 0.410 0.590 41 H 0.118 0.882 42 H 0.115 0.885 43 H 0.065 0.935 44 H 0.077 0.923 45 H 0.056 0.944 46 H 0.053 0.947 47 H 0.079 0.921 48 H 0.131 0.869 49 H 0.142 0.858 50 H 0.136 0.864 51 H 0.133 0.867 52 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.325 4.643 13.699 19.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.004 3.996 3 N -0.326 5.326 4 C -0.374 4.374 5 H 0.075 0.925 6 C -0.206 4.206 7 N -0.585 5.585 8 Si 0.757 3.243 9 H -0.213 1.213 10 H -0.247 1.247 11 H -0.181 1.181 12 C 0.050 3.950 13 H 0.092 0.908 14 C -0.216 4.216 15 C -0.005 4.005 16 N -0.356 5.356 17 C 0.274 3.726 18 O -0.458 6.458 19 C -0.021 4.021 20 N -0.318 5.318 21 C -0.002 4.002 22 C -0.220 4.220 23 C 0.109 3.891 24 C -0.230 4.230 25 C -0.097 4.097 26 C -0.211 4.211 27 C -0.101 4.101 28 C -0.239 4.239 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.057 0.943 32 H 0.043 0.957 33 H 0.077 0.923 34 H 0.068 0.932 35 H 0.063 0.937 36 H 0.095 0.905 37 H 0.071 0.929 38 H 0.082 0.918 39 H 0.071 0.929 40 H 0.246 0.754 41 H 0.135 0.865 42 H 0.132 0.868 43 H 0.083 0.917 44 H 0.095 0.905 45 H 0.075 0.925 46 H 0.073 0.927 47 H 0.098 0.902 48 H 0.148 0.852 49 H 0.160 0.840 50 H 0.154 0.846 51 H 0.151 0.849 52 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -13.386 4.185 14.231 19.981 hybrid contribution 1.093 -0.845 -1.066 1.745 sum -12.293 3.341 13.165 18.320 Atomic orbital electron populations 1.22189 0.97549 1.00243 1.01258 1.21089 0.93767 0.86129 0.98607 1.44259 1.74893 1.11524 1.01951 1.18627 1.36392 0.95896 0.86530 0.92527 1.25969 0.99062 1.00378 0.95163 1.69977 1.46616 1.43736 0.98121 0.86125 0.79658 0.81263 0.77221 1.21322 1.24731 1.18081 1.20858 0.91838 0.97023 0.85289 0.90835 1.22150 0.98419 1.00606 1.00441 1.21718 0.87155 0.96925 0.94699 1.46001 1.10969 1.59682 1.18980 1.21802 0.84478 0.79393 0.86970 1.90652 1.83348 1.51717 1.20052 1.21321 0.84127 1.03340 0.93313 1.46198 1.22772 1.19381 1.43454 1.21449 0.90156 0.88230 1.00322 1.22150 0.98563 1.02557 0.98743 1.18037 0.94054 0.87059 0.89957 1.20879 0.99165 1.01586 1.01350 1.21199 0.99082 0.92610 0.96818 1.21184 0.96228 1.00742 1.02910 1.21143 0.97443 0.97059 0.94409 1.20822 1.01195 0.96198 1.05643 0.93049 0.92396 0.94291 0.95685 0.92270 0.93166 0.93699 0.90507 0.92870 0.91786 0.92946 0.75403 0.86451 0.86758 0.91657 0.90452 0.92500 0.92739 0.90177 0.85172 0.84025 0.84591 0.84887 0.86818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.38 9.83 71.98 0.71 -4.67 16 2 C 0.13 4.99 4.70 86.38 0.41 5.40 16 3 N -0.60 -24.30 1.42 -678.03 -0.96 -25.26 16 4 C -0.24 -12.05 9.50 84.03 0.80 -11.26 16 5 H 0.06 3.00 8.06 -2.91 -0.02 2.98 16 6 C -0.01 -0.45 5.29 84.86 0.45 0.00 16 7 N -0.94 -54.80 13.97 21.65 0.30 -54.50 16 8 Si 0.93 43.91 25.23 68.60 1.73 45.64 16 9 H -0.29 -13.28 6.66 99.48 0.66 -12.62 16 10 H -0.32 -15.70 7.11 99.48 0.71 -15.00 16 11 H -0.26 -11.54 7.11 99.48 0.71 -10.84 16 12 C 0.16 5.22 2.87 44.99 0.13 5.35 16 13 H 0.07 2.53 7.89 -2.38 -0.02 2.51 16 14 C -0.16 -4.68 9.18 71.98 0.66 -4.02 16 15 C 0.12 3.72 4.33 86.38 0.37 4.10 16 16 N -0.70 -21.33 3.99 -463.05 -1.85 -23.17 16 17 C 0.49 14.82 7.66 87.66 0.67 15.49 16 18 O -0.58 -21.55 16.43 -3.06 -0.05 -21.60 16 19 C 0.11 2.60 5.64 85.63 0.48 3.08 16 20 N -0.61 -14.90 2.09 -701.64 -1.47 -16.37 16 21 C 0.12 2.52 5.88 86.38 0.51 3.03 16 22 C -0.16 -2.68 10.24 71.98 0.74 -1.94 16 23 C 0.21 5.41 6.55 38.21 0.25 5.66 16 24 C -0.21 -4.70 9.20 22.40 0.21 -4.49 16 25 C -0.08 -1.56 10.04 22.25 0.22 -1.34 16 26 C -0.19 -3.82 10.04 22.29 0.22 -3.59 16 27 C -0.08 -1.82 10.04 22.25 0.22 -1.60 16 28 C -0.22 -5.53 9.21 22.40 0.21 -5.32 16 29 H 0.05 1.61 8.14 -2.38 -0.02 1.59 16 30 H 0.06 1.95 4.89 -2.38 -0.01 1.93 16 31 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.03 1.10 3.44 -2.39 -0.01 1.09 16 33 H 0.06 2.06 6.43 -2.39 -0.02 2.04 16 34 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 35 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.05 1.54 6.66 -2.39 -0.02 1.52 16 38 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 39 H 0.05 1.71 6.96 -2.39 -0.02 1.69 16 40 H 0.41 12.87 7.89 -92.71 -0.73 12.14 16 41 H 0.12 2.55 8.07 -2.39 -0.02 2.53 16 42 H 0.11 2.51 6.20 -2.39 -0.01 2.50 16 43 H 0.06 1.45 8.07 -2.39 -0.02 1.43 16 44 H 0.08 1.55 6.20 -2.39 -0.01 1.53 16 45 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 46 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 47 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 48 H 0.13 2.54 6.15 -2.91 -0.02 2.53 16 49 H 0.14 2.00 8.06 -2.91 -0.02 1.97 16 50 H 0.14 2.04 8.06 -2.91 -0.02 2.01 16 51 H 0.13 2.40 8.06 -2.91 -0.02 2.38 16 52 H 0.11 2.86 6.14 -2.91 -0.02 2.84 16 Total: -1.00 -64.27 404.88 5.10 -59.17 By element: Atomic # 1 Polarization: 32.09 SS G_CDS: 0.13 Total: 32.23 kcal Atomic # 6 Polarization: -3.40 SS G_CDS: 7.26 Total: 3.86 kcal Atomic # 7 Polarization: -115.33 SS G_CDS: -3.97 Total: -119.30 kcal Atomic # 8 Polarization: -21.55 SS G_CDS: -0.05 Total: -21.60 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 1.73 Total: 45.64 kcal Total: -64.27 5.10 -59.17 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157068780.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.001 kcal (2) G-P(sol) polarization free energy of solvation -64.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.175 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds