Wall clock time and date at job start Tue Mar 31 2020 18:32:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46507 * 109.46865 * 2 1 4 4 C 1.36938 * 119.99560 * 88.98418 * 3 2 1 5 5 H 1.07997 * 119.99655 * 223.59731 * 4 3 2 6 6 C 1.38815 * 119.99802 * 43.87577 * 4 3 2 7 7 N 1.31627 * 119.99459 * 201.79571 * 6 4 3 8 8 Si 1.86789 * 120.00342 * 21.79677 * 6 4 3 9 9 H 1.48497 * 109.47409 * 96.60385 * 8 6 4 10 10 H 1.48504 * 109.47104 * 216.60099 * 8 6 4 11 11 H 1.48501 * 109.47204 * 336.60146 * 8 6 4 12 12 C 1.46490 * 120.00182 * 268.98085 * 3 2 1 13 13 H 1.09001 * 109.46938 * 181.79200 * 12 3 2 14 14 C 1.53007 * 109.47075 * 61.79700 * 12 3 2 15 15 C 1.53000 * 109.47435 * 301.79833 * 12 3 2 16 16 N 1.46503 * 109.46994 * 295.60414 * 15 12 3 17 17 C 1.34777 * 120.00174 * 186.11623 * 16 15 12 18 18 O 1.21547 * 119.99494 * 2.30616 * 17 16 15 19 19 C 1.47838 * 120.00023 * 182.29894 * 17 16 15 20 20 C 1.39600 * 120.14724 * 1.26137 * 19 17 16 21 21 C 1.37937 * 119.85442 * 179.74496 * 20 19 17 22 22 C 1.38384 * 120.14279 * 0.53218 * 21 20 19 23 23 C 1.38332 * 120.29212 * 359.74418 * 22 21 20 24 24 C 1.50706 * 119.92557 * 180.02562 * 23 22 21 25 25 N 1.46900 * 109.47098 * 269.97478 * 24 23 22 26 26 C 1.46894 * 111.00098 * 169.99925 * 25 24 23 27 27 C 1.46900 * 110.99974 * 293.95611 * 25 24 23 28 28 C 1.37981 * 120.14914 * 359.97426 * 23 22 21 29 29 H 1.08997 * 109.47554 * 306.15705 * 1 2 3 30 30 H 1.09000 * 109.46948 * 66.16201 * 1 2 3 31 31 H 1.09003 * 109.46958 * 186.15458 * 1 2 3 32 32 H 1.08998 * 109.47226 * 240.00804 * 2 1 3 33 33 H 1.08995 * 109.47436 * 120.00057 * 2 1 3 34 34 H 0.96995 * 119.99557 * 180.02562 * 7 6 4 35 35 H 1.09001 * 109.46763 * 60.00110 * 14 12 3 36 36 H 1.09005 * 109.46946 * 179.97438 * 14 12 3 37 37 H 1.09001 * 109.47243 * 299.99907 * 14 12 3 38 38 H 1.08997 * 109.47201 * 55.60257 * 15 12 3 39 39 H 1.09000 * 109.46828 * 175.60914 * 15 12 3 40 40 H 0.97000 * 119.99758 * 6.12019 * 16 15 12 41 41 H 1.08000 * 120.06724 * 359.97438 * 20 19 17 42 42 H 1.08001 * 119.92997 * 180.24935 * 21 20 19 43 43 H 1.08001 * 119.84978 * 179.76288 * 22 21 20 44 44 H 1.08998 * 109.46870 * 29.97825 * 24 23 22 45 45 H 1.09004 * 109.47193 * 149.97439 * 24 23 22 46 46 H 1.09001 * 109.47068 * 59.99862 * 26 25 24 47 47 H 1.08996 * 109.47334 * 179.97438 * 26 25 24 48 48 H 1.09000 * 109.47455 * 300.00171 * 26 25 24 49 49 H 1.08997 * 109.47384 * 60.00084 * 27 25 24 50 50 H 1.08998 * 109.47364 * 180.02562 * 27 25 24 51 51 H 1.08999 * 109.47112 * 299.99572 * 27 25 24 52 52 H 1.08001 * 120.07348 * 180.02562 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2266 2.0338 1.1858 5 1 1.9019 3.0570 1.3033 6 6 2.8603 1.3817 2.2347 7 7 2.6929 1.8050 3.4698 8 14 3.9504 -0.0962 1.8935 9 1 5.3679 0.3405 1.8208 10 1 3.7940 -1.0895 2.9864 11 1 3.5561 -0.7146 0.6023 12 6 2.2837 2.0644 -1.2684 13 1 2.6677 3.0648 -1.0689 14 6 0.9866 2.1672 -2.0735 15 6 3.3188 1.2709 -2.0683 16 7 4.5926 1.2617 -1.3447 17 6 5.6888 0.7256 -1.9170 18 8 5.6307 0.2877 -3.0493 19 6 6.9619 0.6705 -1.1675 20 6 7.0256 1.1487 0.1425 21 6 8.2153 1.0894 0.8381 22 6 9.3468 0.5675 0.2363 23 6 9.2920 0.0972 -1.0635 24 6 10.5292 -0.4701 -1.7106 25 7 11.2627 0.6054 -2.3912 26 6 12.5866 0.1439 -2.8297 27 6 10.4893 1.1366 -3.5215 28 6 8.1068 0.1453 -1.7684 29 1 -0.3634 0.6063 0.8297 30 1 -0.3633 0.4153 -0.9400 31 1 -0.3633 -1.0218 0.1102 32 1 1.8933 -0.5137 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 3.1360 1.3496 4.2027 35 1 0.2492 2.7326 -1.5036 36 1 1.1840 2.6759 -3.0171 37 1 0.6025 1.1668 -2.2730 38 1 2.9687 0.2471 -2.2006 39 1 3.4585 1.7362 -3.0440 40 1 4.6471 1.6414 -0.4538 41 1 6.1443 1.5607 0.6115 42 1 8.2649 1.4554 1.8530 43 1 10.2768 0.5269 0.7840 44 1 11.1657 -0.9176 -0.9473 45 1 10.2430 -1.2309 -2.4369 46 1 12.4699 -0.6911 -3.5205 47 1 13.1080 0.9594 -3.3308 48 1 13.1641 -0.1792 -1.9636 49 1 9.5421 1.5353 -3.1583 50 1 11.0556 1.9309 -4.0079 51 1 10.2967 0.3376 -4.2375 52 1 8.0653 -0.2226 -2.7830 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157098769.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:17 Heat of formation + Delta-G solvation = 23.018917 kcal Electronic energy + Delta-G solvation = -29865.147203 eV Core-core repulsion = 26058.669312 eV Total energy + Delta-G solvation = -3806.477891 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.12854 -38.75437 -37.29509 -36.88885 -34.08137 -32.41231 -31.78810 -31.15865 -30.74052 -28.88063 -27.80903 -27.03611 -25.98819 -23.87109 -23.18882 -22.50610 -22.28944 -21.43658 -19.84606 -19.33642 -17.43571 -16.92373 -16.14036 -15.93686 -15.71278 -15.63673 -15.38926 -15.25222 -14.94192 -14.38726 -14.21995 -14.05431 -13.61170 -13.30787 -12.93014 -12.86751 -12.64580 -12.56021 -12.50804 -12.34363 -12.16310 -12.05382 -11.92756 -11.91749 -11.77360 -11.58013 -11.50962 -11.42208 -11.04441 -10.85247 -10.56538 -10.25038 -10.01846 -9.84558 -9.63216 -9.29420 -8.93101 -8.89714 -8.60722 -8.55170 -8.45203 -6.80796 -6.11339 -3.59189 0.97361 1.35585 3.05390 3.20840 3.38506 3.45575 3.59924 3.73964 4.11160 4.43089 4.58034 4.77780 4.87426 4.91731 4.95144 5.08001 5.12149 5.18061 5.18801 5.27491 5.34472 5.40096 5.44572 5.49854 5.56200 5.60661 5.77515 5.80662 5.86355 5.93849 5.98153 6.00492 6.05959 6.15875 6.25111 6.35316 6.38930 6.40385 6.44777 6.50929 6.59518 6.69054 6.71630 6.72646 6.75826 6.88916 6.91343 6.96945 7.14377 7.94147 7.99363 8.35466 8.55385 8.92582 9.60874 10.07406 11.03478 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.016150 B = 0.003451 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1733.277310 B = 8110.747308 C = 9228.589846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.139 3.861 3 N -0.598 5.598 4 C -0.277 4.277 5 H 0.074 0.926 6 C 0.045 3.955 7 N -0.893 5.893 8 Si 0.842 3.158 9 H -0.273 1.273 10 H -0.298 1.298 11 H -0.250 1.250 12 C 0.155 3.845 13 H 0.078 0.922 14 C -0.158 4.158 15 C 0.102 3.898 16 N -0.705 5.705 17 C 0.553 3.447 18 O -0.554 6.554 19 C -0.135 4.135 20 C -0.079 4.079 21 C -0.126 4.126 22 C -0.075 4.075 23 C -0.098 4.098 24 C 0.096 3.904 25 N -0.543 5.543 26 C 0.024 3.976 27 C 0.019 3.981 28 C -0.055 4.055 29 H 0.059 0.941 30 H 0.047 0.953 31 H 0.034 0.966 32 H 0.037 0.963 33 H 0.049 0.951 34 H 0.263 0.737 35 H 0.060 0.940 36 H 0.045 0.955 37 H 0.054 0.946 38 H 0.061 0.939 39 H 0.063 0.937 40 H 0.409 0.591 41 H 0.134 0.866 42 H 0.129 0.871 43 H 0.125 0.875 44 H 0.084 0.916 45 H 0.044 0.956 46 H 0.025 0.975 47 H 0.069 0.931 48 H 0.068 0.932 49 H 0.075 0.925 50 H 0.067 0.933 51 H 0.027 0.973 52 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.637 -2.652 -9.953 17.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.014 3.986 3 N -0.321 5.321 4 C -0.405 4.405 5 H 0.092 0.908 6 C -0.156 4.156 7 N -0.533 5.533 8 Si 0.669 3.331 9 H -0.200 1.200 10 H -0.225 1.225 11 H -0.174 1.174 12 C 0.047 3.953 13 H 0.096 0.904 14 C -0.217 4.217 15 C -0.023 4.023 16 N -0.356 5.356 17 C 0.340 3.660 18 O -0.434 6.434 19 C -0.138 4.138 20 C -0.098 4.098 21 C -0.144 4.144 22 C -0.094 4.094 23 C -0.098 4.098 24 C -0.031 4.031 25 N -0.266 5.266 26 C -0.124 4.124 27 C -0.130 4.130 28 C -0.075 4.075 29 H 0.078 0.922 30 H 0.066 0.934 31 H 0.053 0.947 32 H 0.055 0.945 33 H 0.067 0.933 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.064 0.936 37 H 0.073 0.927 38 H 0.079 0.921 39 H 0.082 0.918 40 H 0.246 0.754 41 H 0.152 0.848 42 H 0.147 0.853 43 H 0.143 0.857 44 H 0.102 0.898 45 H 0.063 0.937 46 H 0.043 0.957 47 H 0.087 0.913 48 H 0.087 0.913 49 H 0.094 0.906 50 H 0.086 0.914 51 H 0.045 0.955 52 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 13.669 -2.589 -10.216 17.260 hybrid contribution 0.384 -1.399 0.048 1.452 sum 14.053 -3.988 -10.168 17.799 Atomic orbital electron populations 1.22430 0.99307 0.99467 1.01671 1.21206 0.91951 0.86665 0.98776 1.44154 1.75233 1.11366 1.01335 1.18723 1.34053 0.99411 0.88344 0.90801 1.25638 0.97316 0.97457 0.95228 1.69894 1.42831 1.42090 0.98439 0.87717 0.82332 0.84070 0.78934 1.19989 1.22472 1.17443 1.20831 0.91840 0.96004 0.86599 0.90380 1.22261 0.98942 1.01481 0.99019 1.22046 0.83497 1.01535 0.95232 1.45940 1.09037 1.59727 1.20913 1.18259 0.83734 0.78081 0.85954 1.90701 1.85575 1.48677 1.18490 1.19997 0.94394 1.04296 0.95144 1.21702 0.98776 0.96246 0.93036 1.21120 0.92480 1.00446 1.00375 1.21152 0.98149 0.95872 0.94216 1.19579 0.94120 1.01453 0.94671 1.21038 0.92644 0.91704 0.97708 1.62003 1.03379 1.33811 1.27437 1.22389 0.90608 0.99378 1.00009 1.22493 0.99285 0.99348 0.91826 1.21079 0.90787 0.96042 0.99563 0.92163 0.93444 0.94705 0.94494 0.93262 0.92665 0.92111 0.93552 0.92748 0.92109 0.91838 0.75387 0.84837 0.85301 0.85673 0.89771 0.93733 0.95668 0.91259 0.91324 0.90615 0.91412 0.95487 0.85186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.14 9.90 37.16 0.37 -2.77 16 2 C 0.14 2.88 3.96 -4.04 -0.02 2.86 16 3 N -0.60 -12.74 1.68 -165.66 -0.28 -13.02 16 4 C -0.28 -7.00 9.76 -15.06 -0.15 -7.14 16 5 H 0.07 2.06 8.06 -52.49 -0.42 1.64 16 6 C 0.05 1.20 5.28 -17.43 -0.09 1.11 16 7 N -0.89 -25.53 13.97 55.49 0.78 -24.76 16 8 Si 0.84 19.64 24.26 -169.99 -4.12 15.52 16 9 H -0.27 -5.92 4.73 56.52 0.27 -5.65 16 10 H -0.30 -7.42 7.11 56.52 0.40 -7.02 16 11 H -0.25 -5.73 5.22 56.52 0.30 -5.43 16 12 C 0.15 2.79 2.77 -67.93 -0.19 2.61 16 13 H 0.08 1.44 7.89 -51.93 -0.41 1.03 16 14 C -0.16 -2.44 8.39 37.16 0.31 -2.13 16 15 C 0.10 1.81 5.04 -4.04 -0.02 1.79 16 16 N -0.71 -13.17 5.26 -61.25 -0.32 -13.49 16 17 C 0.55 10.44 7.77 -12.33 -0.10 10.35 16 18 O -0.55 -11.50 16.32 5.32 0.09 -11.41 16 19 C -0.14 -2.29 5.87 -104.97 -0.62 -2.90 16 20 C -0.08 -1.30 8.58 -39.18 -0.34 -1.63 16 21 C -0.13 -1.78 10.03 -39.64 -0.40 -2.18 16 22 C -0.08 -0.93 9.69 -39.49 -0.38 -1.32 16 23 C -0.10 -1.24 4.88 -104.68 -0.51 -1.75 16 24 C 0.10 0.99 5.11 -4.97 -0.03 0.96 16 25 N -0.54 -5.53 5.01 -252.73 -1.27 -6.80 16 26 C 0.02 0.19 9.57 60.06 0.57 0.76 16 27 C 0.02 0.19 9.14 60.06 0.55 0.74 16 28 C -0.06 -0.82 7.51 -39.18 -0.29 -1.11 16 29 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.05 0.79 5.69 -51.93 -0.30 0.50 16 31 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.04 0.73 6.25 -51.93 -0.32 0.40 16 33 H 0.05 1.12 4.13 -51.93 -0.21 0.91 16 34 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 35 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.05 0.83 6.10 -51.93 -0.32 0.51 16 38 H 0.06 1.13 6.42 -51.93 -0.33 0.80 16 39 H 0.06 1.05 8.10 -51.93 -0.42 0.63 16 40 H 0.41 7.88 5.01 -40.82 -0.20 7.67 16 41 H 0.13 2.37 4.64 -52.49 -0.24 2.13 16 42 H 0.13 1.61 8.06 -52.49 -0.42 1.18 16 43 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 44 H 0.08 0.74 8.01 -51.93 -0.42 0.32 16 45 H 0.04 0.45 8.06 -51.93 -0.42 0.03 16 46 H 0.02 0.18 8.14 -51.93 -0.42 -0.24 16 47 H 0.07 0.48 8.12 -51.93 -0.42 0.06 16 48 H 0.07 0.46 8.12 -51.93 -0.42 0.04 16 49 H 0.08 0.90 6.17 -51.93 -0.32 0.58 16 50 H 0.07 0.61 8.12 -51.93 -0.42 0.18 16 51 H 0.03 0.26 8.14 -51.93 -0.42 -0.16 16 52 H 0.13 1.90 7.62 -52.49 -0.40 1.50 16 LS Contribution 396.61 15.07 5.98 5.98 Total: -1.00 -29.47 396.61 -9.24 -38.71 By element: Atomic # 1 Polarization: 19.79 SS G_CDS: -8.76 Total: 11.03 kcal Atomic # 6 Polarization: -0.44 SS G_CDS: -1.32 Total: -1.76 kcal Atomic # 7 Polarization: -56.98 SS G_CDS: -1.09 Total: -58.07 kcal Atomic # 8 Polarization: -11.50 SS G_CDS: 0.09 Total: -11.41 kcal Atomic # 14 Polarization: 19.64 SS G_CDS: -4.12 Total: 15.52 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -29.47 -9.24 -38.71 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157098769.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.729 kcal (2) G-P(sol) polarization free energy of solvation -29.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds