Wall clock time and date at job start Tue Mar 31 2020 18:32:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46497 * 109.47043 * 2 1 4 4 C 1.36937 * 120.00283 * 275.26635 * 3 2 1 5 5 H 1.07999 * 120.00095 * 34.16113 * 4 3 2 6 6 C 1.38810 * 120.00104 * 214.15719 * 4 3 2 7 7 N 1.31621 * 120.00394 * 12.62123 * 6 4 3 8 8 Si 1.86804 * 119.99998 * 192.61563 * 6 4 3 9 9 H 1.48503 * 109.46861 * 90.00266 * 8 6 4 10 10 H 1.48495 * 109.47301 * 210.00583 * 8 6 4 11 11 H 1.48502 * 109.46957 * 330.00461 * 8 6 4 12 12 C 1.46500 * 120.00006 * 95.27130 * 3 2 1 13 13 H 1.08995 * 109.47377 * 179.49037 * 12 3 2 14 14 C 1.53003 * 109.47039 * 59.48725 * 12 3 2 15 15 C 1.53000 * 109.47255 * 299.49267 * 12 3 2 16 16 N 1.46505 * 109.46913 * 305.00137 * 15 12 3 17 17 C 1.34767 * 120.00035 * 180.02562 * 16 15 12 18 18 O 1.21282 * 120.00444 * 359.97438 * 17 16 15 19 19 C 1.50705 * 120.00076 * 179.97438 * 17 16 15 20 20 H 1.09000 * 109.47013 * 327.69266 * 19 17 16 21 21 C 1.50702 * 109.47019 * 87.69014 * 19 17 16 22 22 C 1.38237 * 119.99731 * 73.89142 * 21 19 17 23 23 C 1.38235 * 119.99837 * 179.78758 * 22 21 19 24 24 C 1.38234 * 119.99741 * 0.43537 * 23 22 21 25 25 C 1.38234 * 120.00363 * 359.81284 * 24 23 22 26 26 C 1.38230 * 120.00134 * 254.15627 * 21 19 17 27 27 N 1.46900 * 109.47145 * 207.69145 * 19 17 16 28 28 C 1.46898 * 110.99874 * 60.59339 * 27 19 17 29 29 C 1.46903 * 110.99969 * 184.54554 * 27 19 17 30 30 H 1.09000 * 109.46711 * 60.00088 * 1 2 3 31 31 H 1.08996 * 109.47111 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46838 * 299.99974 * 1 2 3 33 33 H 1.09007 * 109.47179 * 240.00559 * 2 1 3 34 34 H 1.08998 * 109.47080 * 120.00291 * 2 1 3 35 35 H 0.96993 * 120.00159 * 179.97438 * 7 6 4 36 36 H 1.09004 * 109.46813 * 60.00524 * 14 12 3 37 37 H 1.08999 * 109.47327 * 179.97438 * 14 12 3 38 38 H 1.08995 * 109.47291 * 300.00364 * 14 12 3 39 39 H 1.09001 * 109.47475 * 185.00024 * 15 12 3 40 40 H 1.09000 * 109.46944 * 64.99240 * 15 12 3 41 41 H 0.97008 * 119.99622 * 359.97438 * 16 15 12 42 42 H 1.07997 * 120.00195 * 359.97438 * 22 21 19 43 43 H 1.07997 * 120.00116 * 180.27022 * 23 22 21 44 44 H 1.08009 * 119.99902 * 179.83610 * 24 23 22 45 45 H 1.08000 * 120.00393 * 179.97438 * 25 24 23 46 46 H 1.08008 * 120.00115 * 359.97438 * 26 21 19 47 47 H 1.08997 * 109.47252 * 179.49393 * 28 27 19 48 48 H 1.09007 * 109.47140 * 59.49421 * 28 27 19 49 49 H 1.09001 * 109.47196 * 299.49409 * 28 27 19 50 50 H 1.08998 * 109.47147 * 296.04984 * 29 27 19 51 51 H 1.09004 * 109.46421 * 56.04852 * 29 27 19 52 52 H 1.08999 * 109.47036 * 176.04451 * 29 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1439 2.0631 -1.1809 5 1 1.4435 1.8862 -1.9837 6 6 3.1715 2.9816 -1.3460 7 7 4.1633 3.0222 -0.4817 8 14 3.1467 4.1602 -2.7951 9 1 2.4317 5.4034 -2.4098 10 1 4.5400 4.4918 -3.1874 11 1 2.4486 3.5223 -3.9401 12 6 2.3724 2.0330 1.2634 13 1 2.7209 3.0463 1.0643 14 6 3.4827 1.2381 1.9536 15 6 1.1426 2.0859 2.1721 16 7 0.0406 2.7427 1.4647 17 6 -1.1507 2.9031 2.0740 18 8 -1.3108 2.5033 3.2078 19 6 -2.2842 3.5793 1.3465 20 1 -1.8830 4.3342 0.6703 21 6 -3.0551 2.5546 0.5547 22 6 -3.8918 1.6660 1.2038 23 6 -4.6023 0.7290 0.4772 24 6 -4.4693 0.6747 -0.8977 25 6 -3.6288 1.5600 -1.5463 26 6 -2.9215 2.4998 -0.8200 27 7 -3.1783 4.2197 2.3203 28 6 -2.4628 5.2367 3.1025 29 6 -4.3537 4.7977 1.6552 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8901 34 1 1.8933 -0.5139 0.8899 35 1 4.8815 3.6638 -0.5974 36 1 4.3588 1.2005 1.3063 37 1 3.7464 1.7233 2.8934 38 1 3.1341 0.2248 2.1527 39 1 1.3816 2.6485 3.0746 40 1 0.8474 1.0723 2.4433 41 1 0.1687 3.0628 0.5579 42 1 -3.9926 1.7058 2.2784 43 1 -5.2592 0.0376 0.9839 44 1 -5.0224 -0.0592 -1.4652 45 1 -3.5245 1.5173 -2.6204 46 1 -2.2649 3.1915 -1.3268 47 1 -3.1501 5.7013 3.8094 48 1 -2.0634 5.9968 2.4310 49 1 -1.6441 4.7666 3.6472 50 1 -4.0356 5.5952 0.9837 51 1 -4.8649 4.0232 1.0833 52 1 -5.0327 5.2034 2.4052 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157118541.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:48 Heat of formation + Delta-G solvation = 22.608035 kcal Electronic energy + Delta-G solvation = -31259.905678 eV Core-core repulsion = 27453.409970 eV Total energy + Delta-G solvation = -3806.495709 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.23478 -38.56830 -37.16599 -36.27848 -33.59028 -31.95918 -31.81720 -30.90478 -30.75474 -28.25992 -27.88281 -27.15224 -25.16390 -23.92308 -22.79608 -22.28823 -21.76749 -21.26580 -19.56528 -19.11249 -17.19217 -16.79977 -16.64178 -16.08978 -15.55745 -15.05343 -14.80221 -14.63601 -14.32713 -14.31066 -14.05248 -13.72667 -13.42872 -13.24415 -12.84714 -12.69447 -12.61394 -12.38805 -12.28331 -12.23704 -11.98123 -11.89937 -11.77782 -11.57533 -11.42099 -11.03377 -10.94927 -10.92997 -10.89233 -10.83505 -10.64289 -10.28894 -10.06630 -9.60277 -9.49569 -9.44043 -8.78802 -8.55703 -8.52744 -8.35556 -8.30763 -6.64094 -5.88172 -3.39783 1.37109 1.53467 3.09305 3.27618 3.36756 3.37441 3.50340 3.82071 4.27539 4.39756 4.76140 4.95412 5.09536 5.13319 5.22805 5.26812 5.27742 5.30773 5.36031 5.41850 5.53509 5.59838 5.63674 5.73233 5.84809 5.94702 6.01702 6.03058 6.10941 6.17359 6.23075 6.31040 6.42120 6.52486 6.53780 6.58936 6.61450 6.63141 6.65741 6.72696 6.86344 6.91995 6.95719 6.99778 7.09560 7.12724 7.21765 7.52086 7.60864 7.74847 8.21122 8.44087 8.79826 9.16558 9.77183 10.34675 11.17886 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.010825 B = 0.004566 C = 0.004335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2586.047814 B = 6131.351946 C = 6457.307623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.141 3.859 3 N -0.581 5.581 4 C -0.257 4.257 5 H 0.063 0.937 6 C 0.010 3.990 7 N -0.894 5.894 8 Si 0.897 3.103 9 H -0.288 1.288 10 H -0.291 1.291 11 H -0.279 1.279 12 C 0.175 3.825 13 H 0.105 0.895 14 C -0.142 4.142 15 C 0.104 3.896 16 N -0.699 5.699 17 C 0.516 3.484 18 O -0.537 6.537 19 C 0.108 3.892 20 H 0.064 0.936 21 C -0.077 4.077 22 C -0.082 4.082 23 C -0.128 4.128 24 C -0.117 4.117 25 C -0.120 4.120 26 C -0.103 4.103 27 N -0.519 5.519 28 C 0.021 3.979 29 C 0.024 3.976 30 H 0.046 0.954 31 H 0.029 0.971 32 H 0.052 0.948 33 H 0.039 0.961 34 H 0.035 0.965 35 H 0.254 0.746 36 H 0.076 0.924 37 H 0.032 0.968 38 H 0.029 0.971 39 H 0.050 0.950 40 H 0.052 0.948 41 H 0.409 0.591 42 H 0.131 0.869 43 H 0.119 0.881 44 H 0.118 0.882 45 H 0.121 0.879 46 H 0.122 0.878 47 H 0.070 0.930 48 H 0.024 0.976 49 H 0.078 0.922 50 H 0.024 0.976 51 H 0.072 0.928 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.497 0.924 1.888 14.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.015 3.985 3 N -0.303 5.303 4 C -0.387 4.387 5 H 0.081 0.919 6 C -0.189 4.189 7 N -0.537 5.537 8 Si 0.727 3.273 9 H -0.215 1.215 10 H -0.217 1.217 11 H -0.204 1.204 12 C 0.067 3.933 13 H 0.122 0.878 14 C -0.201 4.201 15 C -0.022 4.022 16 N -0.349 5.349 17 C 0.300 3.700 18 O -0.415 6.415 19 C -0.003 4.003 20 H 0.081 0.919 21 C -0.077 4.077 22 C -0.100 4.100 23 C -0.146 4.146 24 C -0.135 4.135 25 C -0.138 4.138 26 C -0.121 4.121 27 N -0.243 5.243 28 C -0.127 4.127 29 C -0.124 4.124 30 H 0.065 0.935 31 H 0.049 0.951 32 H 0.071 0.929 33 H 0.058 0.942 34 H 0.054 0.946 35 H 0.064 0.936 36 H 0.095 0.905 37 H 0.051 0.949 38 H 0.048 0.952 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.245 0.755 42 H 0.149 0.851 43 H 0.137 0.863 44 H 0.136 0.864 45 H 0.139 0.861 46 H 0.140 0.860 47 H 0.089 0.911 48 H 0.042 0.958 49 H 0.097 0.903 50 H 0.043 0.957 51 H 0.091 0.909 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -14.571 0.379 3.021 14.886 hybrid contribution 0.483 1.378 -1.832 2.343 sum -14.088 1.757 1.189 14.247 Atomic orbital electron populations 1.22407 0.99688 0.98842 1.01614 1.20763 0.91792 0.87412 0.98583 1.43844 1.76074 1.08222 1.02149 1.19101 1.07715 1.18793 0.93119 0.91934 1.25197 0.94810 1.01335 0.97594 1.69948 1.09922 1.36812 1.37012 0.86382 0.76943 0.81236 0.82710 1.21511 1.21736 1.20432 1.20546 0.88787 0.99802 0.84150 0.87781 1.21997 1.01135 0.97922 0.99096 1.22164 0.88466 0.96071 0.95473 1.45969 1.10925 1.59051 1.19004 1.20032 0.83112 0.80205 0.86663 1.90645 1.82442 1.50136 1.18246 1.20511 0.92069 0.95222 0.92538 0.91867 1.19302 0.98237 0.97231 0.92974 1.21077 0.94778 0.93473 1.00670 1.21133 1.00341 0.98975 0.94166 1.21139 0.98845 0.98827 0.94698 1.21042 0.97172 0.95791 0.99827 1.21062 0.98908 0.99044 0.93127 1.61719 1.07597 1.30999 1.23967 1.22463 0.99462 0.93166 0.97565 1.22443 0.93002 0.98610 0.98378 0.93512 0.95147 0.92899 0.94246 0.94620 0.93560 0.90523 0.94886 0.95241 0.93136 0.92967 0.75476 0.85103 0.86302 0.86434 0.86104 0.85975 0.91138 0.95776 0.90316 0.95706 0.90882 0.91184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.07 9.87 37.16 0.37 -2.71 16 2 C 0.14 2.86 5.70 -4.04 -0.02 2.84 16 3 N -0.58 -12.90 1.86 -165.66 -0.31 -13.21 16 4 C -0.26 -6.28 9.25 -15.06 -0.14 -6.42 16 5 H 0.06 1.54 7.86 -52.49 -0.41 1.13 16 6 C 0.01 0.26 4.97 -17.43 -0.09 0.17 16 7 N -0.89 -23.40 10.43 55.49 0.58 -22.82 16 8 Si 0.90 20.08 29.57 -169.99 -5.03 15.06 16 9 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 10 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 11 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 12 C 0.17 3.72 1.92 -67.93 -0.13 3.59 16 13 H 0.10 2.52 5.91 -51.93 -0.31 2.22 16 14 C -0.14 -2.91 9.03 37.16 0.34 -2.58 16 15 C 0.10 2.01 4.34 -4.04 -0.02 1.99 16 16 N -0.70 -12.76 4.04 -60.29 -0.24 -13.00 16 17 C 0.52 9.14 5.72 -10.99 -0.06 9.08 16 18 O -0.54 -10.98 15.58 5.56 0.09 -10.90 16 19 C 0.11 1.61 2.07 -70.01 -0.14 1.46 16 20 H 0.06 0.90 7.94 -51.93 -0.41 0.49 16 21 C -0.08 -1.08 3.50 -104.62 -0.37 -1.45 16 22 C -0.08 -1.14 8.40 -39.58 -0.33 -1.47 16 23 C -0.13 -1.56 10.05 -39.58 -0.40 -1.95 16 24 C -0.12 -1.35 10.05 -39.58 -0.40 -1.75 16 25 C -0.12 -1.46 10.05 -39.58 -0.40 -1.86 16 26 C -0.10 -1.37 9.67 -39.59 -0.38 -1.76 16 27 N -0.52 -7.12 4.12 -245.99 -1.01 -8.14 16 28 C 0.02 0.28 9.22 60.06 0.55 0.83 16 29 C 0.02 0.26 9.23 60.07 0.55 0.82 16 30 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 31 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.05 1.02 5.01 -51.93 -0.26 0.76 16 33 H 0.04 0.83 8.08 -51.92 -0.42 0.41 16 34 H 0.04 0.71 6.41 -51.93 -0.33 0.37 16 35 H 0.25 6.58 8.31 -40.82 -0.34 6.24 16 36 H 0.08 1.78 7.47 -51.93 -0.39 1.39 16 37 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.03 0.56 6.64 -51.93 -0.35 0.22 16 39 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.05 1.05 7.00 -51.93 -0.36 0.69 16 41 H 0.41 7.70 7.87 -40.82 -0.32 7.38 16 42 H 0.13 1.96 7.91 -52.49 -0.42 1.55 16 43 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 44 H 0.12 1.08 8.06 -52.48 -0.42 0.66 16 45 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 46 H 0.12 1.56 8.00 -52.48 -0.42 1.14 16 47 H 0.07 0.78 8.13 -51.93 -0.42 0.36 16 48 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 49 H 0.08 1.20 6.44 -51.93 -0.33 0.86 16 50 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 51 H 0.07 0.83 6.23 -51.93 -0.32 0.50 16 52 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 406.34 15.07 6.12 6.12 Total: -1.00 -27.27 406.34 -9.71 -36.99 By element: Atomic # 1 Polarization: 19.90 SS G_CDS: -8.84 Total: 11.06 kcal Atomic # 6 Polarization: -0.09 SS G_CDS: -1.07 Total: -1.16 kcal Atomic # 7 Polarization: -56.19 SS G_CDS: -0.99 Total: -57.17 kcal Atomic # 8 Polarization: -10.98 SS G_CDS: 0.09 Total: -10.90 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.03 Total: 15.06 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -27.27 -9.71 -36.99 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157118541.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.594 kcal (2) G-P(sol) polarization free energy of solvation -27.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds