Wall clock time and date at job start Tue Mar 31 2020 18:32:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46497 * 109.47043 * 2 1 4 4 C 1.36937 * 120.00283 * 275.26635 * 3 2 1 5 5 H 1.07999 * 120.00095 * 34.16113 * 4 3 2 6 6 C 1.38810 * 120.00104 * 214.15719 * 4 3 2 7 7 N 1.31621 * 120.00394 * 12.62123 * 6 4 3 8 8 Si 1.86804 * 119.99998 * 192.61563 * 6 4 3 9 9 H 1.48503 * 109.46861 * 90.00266 * 8 6 4 10 10 H 1.48495 * 109.47301 * 210.00583 * 8 6 4 11 11 H 1.48502 * 109.46957 * 330.00461 * 8 6 4 12 12 C 1.46500 * 120.00006 * 95.27130 * 3 2 1 13 13 H 1.08995 * 109.47377 * 179.49037 * 12 3 2 14 14 C 1.53003 * 109.47039 * 59.48725 * 12 3 2 15 15 C 1.53000 * 109.47255 * 299.49267 * 12 3 2 16 16 N 1.46505 * 109.46913 * 305.00137 * 15 12 3 17 17 C 1.34767 * 120.00035 * 180.02562 * 16 15 12 18 18 O 1.21282 * 120.00444 * 359.97438 * 17 16 15 19 19 C 1.50705 * 120.00076 * 179.97438 * 17 16 15 20 20 H 1.09000 * 109.47013 * 327.69266 * 19 17 16 21 21 C 1.50702 * 109.47019 * 87.69014 * 19 17 16 22 22 C 1.38237 * 119.99731 * 73.89142 * 21 19 17 23 23 C 1.38235 * 119.99837 * 179.78758 * 22 21 19 24 24 C 1.38234 * 119.99741 * 0.43537 * 23 22 21 25 25 C 1.38234 * 120.00363 * 359.81284 * 24 23 22 26 26 C 1.38230 * 120.00134 * 254.15627 * 21 19 17 27 27 N 1.46900 * 109.47145 * 207.69145 * 19 17 16 28 28 C 1.46898 * 110.99874 * 60.59339 * 27 19 17 29 29 C 1.46903 * 110.99969 * 184.54554 * 27 19 17 30 30 H 1.09000 * 109.46711 * 60.00088 * 1 2 3 31 31 H 1.08996 * 109.47111 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46838 * 299.99974 * 1 2 3 33 33 H 1.09007 * 109.47179 * 240.00559 * 2 1 3 34 34 H 1.08998 * 109.47080 * 120.00291 * 2 1 3 35 35 H 0.96993 * 120.00159 * 179.97438 * 7 6 4 36 36 H 1.09004 * 109.46813 * 60.00524 * 14 12 3 37 37 H 1.08999 * 109.47327 * 179.97438 * 14 12 3 38 38 H 1.08995 * 109.47291 * 300.00364 * 14 12 3 39 39 H 1.09001 * 109.47475 * 185.00024 * 15 12 3 40 40 H 1.09000 * 109.46944 * 64.99240 * 15 12 3 41 41 H 0.97008 * 119.99622 * 359.97438 * 16 15 12 42 42 H 1.07997 * 120.00195 * 359.97438 * 22 21 19 43 43 H 1.07997 * 120.00116 * 180.27022 * 23 22 21 44 44 H 1.08009 * 119.99902 * 179.83610 * 24 23 22 45 45 H 1.08000 * 120.00393 * 179.97438 * 25 24 23 46 46 H 1.08008 * 120.00115 * 359.97438 * 26 21 19 47 47 H 1.08997 * 109.47252 * 179.49393 * 28 27 19 48 48 H 1.09007 * 109.47140 * 59.49421 * 28 27 19 49 49 H 1.09001 * 109.47196 * 299.49409 * 28 27 19 50 50 H 1.08998 * 109.47147 * 296.04984 * 29 27 19 51 51 H 1.09004 * 109.46421 * 56.04852 * 29 27 19 52 52 H 1.08999 * 109.47036 * 176.04451 * 29 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1439 2.0631 -1.1809 5 1 1.4435 1.8862 -1.9837 6 6 3.1715 2.9816 -1.3460 7 7 4.1633 3.0222 -0.4817 8 14 3.1467 4.1602 -2.7951 9 1 2.4317 5.4034 -2.4098 10 1 4.5400 4.4918 -3.1874 11 1 2.4486 3.5223 -3.9401 12 6 2.3724 2.0330 1.2634 13 1 2.7209 3.0463 1.0643 14 6 3.4827 1.2381 1.9536 15 6 1.1426 2.0859 2.1721 16 7 0.0406 2.7427 1.4647 17 6 -1.1507 2.9031 2.0740 18 8 -1.3108 2.5033 3.2078 19 6 -2.2842 3.5793 1.3465 20 1 -1.8830 4.3342 0.6703 21 6 -3.0551 2.5546 0.5547 22 6 -3.8918 1.6660 1.2038 23 6 -4.6023 0.7290 0.4772 24 6 -4.4693 0.6747 -0.8977 25 6 -3.6288 1.5600 -1.5463 26 6 -2.9215 2.4998 -0.8200 27 7 -3.1783 4.2197 2.3203 28 6 -2.4628 5.2367 3.1025 29 6 -4.3537 4.7977 1.6552 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8901 34 1 1.8933 -0.5139 0.8899 35 1 4.8815 3.6638 -0.5974 36 1 4.3588 1.2005 1.3063 37 1 3.7464 1.7233 2.8934 38 1 3.1341 0.2248 2.1527 39 1 1.3816 2.6485 3.0746 40 1 0.8474 1.0723 2.4433 41 1 0.1687 3.0628 0.5579 42 1 -3.9926 1.7058 2.2784 43 1 -5.2592 0.0376 0.9839 44 1 -5.0224 -0.0592 -1.4652 45 1 -3.5245 1.5173 -2.6204 46 1 -2.2649 3.1915 -1.3268 47 1 -3.1501 5.7013 3.8094 48 1 -2.0634 5.9968 2.4310 49 1 -1.6441 4.7666 3.6472 50 1 -4.0356 5.5952 0.9837 51 1 -4.8649 4.0232 1.0833 52 1 -5.0327 5.2034 2.4052 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157118541.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:47 Heat of formation + Delta-G solvation = 8.875769 kcal Electronic energy + Delta-G solvation = -31260.501154 eV Core-core repulsion = 27453.409970 eV Total energy + Delta-G solvation = -3807.091184 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.46115 -39.79113 -38.67164 -37.53240 -35.18666 -33.71272 -33.07307 -32.37659 -31.73276 -29.94742 -29.05812 -28.19359 -26.63306 -25.75897 -23.82045 -23.37125 -23.24878 -22.49307 -21.06547 -20.66870 -18.78971 -18.13641 -17.84100 -17.40792 -16.67123 -16.63362 -16.22870 -16.15681 -15.59813 -15.45963 -15.26268 -15.05843 -14.97164 -14.31370 -14.24954 -14.06322 -13.92507 -13.81698 -13.60556 -13.45151 -13.31581 -13.19585 -13.10424 -12.87420 -12.77375 -12.71257 -12.54737 -12.53237 -12.35370 -12.03847 -11.91064 -11.88141 -11.83789 -11.32820 -11.17872 -10.87260 -10.41897 -9.87469 -9.76256 -9.58114 -9.38104 -8.48021 -7.79003 -5.32021 0.38689 0.55813 1.49066 1.53544 1.59154 1.71229 2.21423 2.54931 2.81333 3.14626 3.35956 3.66824 3.68042 3.90709 3.94516 4.15746 4.22121 4.27092 4.31634 4.34632 4.40187 4.48290 4.59897 4.60976 4.65445 4.68724 4.70055 4.76584 4.82106 4.90293 4.95050 4.96455 4.99670 5.00019 5.07710 5.08627 5.20927 5.23455 5.34637 5.54321 5.59303 5.62199 5.63093 5.66489 5.74086 5.77653 5.86948 5.91741 6.02149 6.14001 6.53328 6.73881 7.26702 7.35380 7.94695 8.47570 9.24509 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.010825 B = 0.004566 C = 0.004335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2586.047814 B = 6131.351946 C = 6457.307623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.140 3.860 3 N -0.588 5.588 4 C -0.254 4.254 5 H 0.061 0.939 6 C -0.032 4.032 7 N -0.917 5.917 8 Si 0.952 3.048 9 H -0.286 1.286 10 H -0.303 1.303 11 H -0.273 1.273 12 C 0.181 3.819 13 H 0.076 0.924 14 C -0.133 4.133 15 C 0.118 3.882 16 N -0.698 5.698 17 C 0.519 3.481 18 O -0.566 6.566 19 C 0.115 3.885 20 H 0.067 0.933 21 C -0.086 4.086 22 C -0.095 4.095 23 C -0.129 4.129 24 C -0.114 4.114 25 C -0.123 4.123 26 C -0.115 4.115 27 N -0.532 5.532 28 C 0.024 3.976 29 C 0.028 3.972 30 H 0.040 0.960 31 H 0.048 0.952 32 H 0.043 0.957 33 H 0.031 0.969 34 H 0.041 0.959 35 H 0.248 0.752 36 H 0.047 0.953 37 H 0.048 0.952 38 H 0.040 0.960 39 H 0.050 0.950 40 H 0.047 0.953 41 H 0.407 0.593 42 H 0.114 0.886 43 H 0.139 0.861 44 H 0.146 0.854 45 H 0.139 0.861 46 H 0.123 0.877 47 H 0.090 0.910 48 H 0.031 0.969 49 H 0.051 0.949 50 H 0.032 0.968 51 H 0.070 0.930 52 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.550 0.576 0.985 16.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.015 3.985 3 N -0.310 5.310 4 C -0.385 4.385 5 H 0.079 0.921 6 C -0.229 4.229 7 N -0.562 5.562 8 Si 0.781 3.219 9 H -0.212 1.212 10 H -0.230 1.230 11 H -0.198 1.198 12 C 0.074 3.926 13 H 0.094 0.906 14 C -0.192 4.192 15 C -0.008 4.008 16 N -0.348 5.348 17 C 0.304 3.696 18 O -0.446 6.446 19 C 0.004 3.996 20 H 0.085 0.915 21 C -0.087 4.087 22 C -0.113 4.113 23 C -0.147 4.147 24 C -0.132 4.132 25 C -0.141 4.141 26 C -0.133 4.133 27 N -0.256 5.256 28 C -0.124 4.124 29 C -0.120 4.120 30 H 0.060 0.940 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.050 0.950 34 H 0.059 0.941 35 H 0.057 0.943 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.059 0.941 39 H 0.069 0.931 40 H 0.065 0.935 41 H 0.243 0.757 42 H 0.133 0.867 43 H 0.157 0.843 44 H 0.163 0.837 45 H 0.157 0.843 46 H 0.141 0.859 47 H 0.109 0.891 48 H 0.050 0.950 49 H 0.070 0.930 50 H 0.050 0.950 51 H 0.089 0.911 52 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -16.653 0.026 2.111 16.786 hybrid contribution 1.081 1.424 -1.538 2.358 sum -15.572 1.450 0.573 15.650 Atomic orbital electron populations 1.22185 0.97947 0.99765 1.00808 1.20819 0.92954 0.86317 0.98426 1.43938 1.76196 1.08983 1.01900 1.19245 1.07107 1.18526 0.93603 0.92104 1.25736 0.94804 1.02837 0.99559 1.70090 1.10392 1.37313 1.38372 0.85517 0.76030 0.79702 0.80604 1.21244 1.23003 1.19793 1.20379 0.89663 0.98289 0.84271 0.90628 1.21861 0.99650 0.98667 0.99044 1.21870 0.88041 0.95880 0.94965 1.45936 1.11044 1.59058 1.18768 1.20526 0.83307 0.79468 0.86265 1.90623 1.82906 1.51436 1.19589 1.20409 0.91350 0.95428 0.92433 0.91547 1.19256 0.98727 0.97452 0.93281 1.21029 0.95773 0.94496 1.00037 1.21389 1.00014 0.98594 0.94670 1.21471 0.98325 0.98839 0.94548 1.21330 0.96686 0.95269 1.00825 1.21179 0.99482 0.99750 0.92911 1.61718 1.08038 1.31680 1.24191 1.22430 0.99178 0.92946 0.97851 1.22459 0.92063 0.98599 0.98845 0.94049 0.93302 0.93822 0.95028 0.94102 0.94309 0.93398 0.93327 0.94114 0.93147 0.93496 0.75728 0.86743 0.84310 0.83666 0.84279 0.85873 0.89122 0.95038 0.93035 0.94988 0.91137 0.89535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.24 9.87 71.98 0.71 -4.53 16 2 C 0.14 5.59 5.70 86.38 0.49 6.08 16 3 N -0.59 -26.04 1.86 -678.03 -1.26 -27.30 16 4 C -0.25 -12.35 9.25 84.03 0.78 -11.57 16 5 H 0.06 2.95 7.86 -2.91 -0.02 2.93 16 6 C -0.03 -1.62 4.97 84.86 0.42 -1.20 16 7 N -0.92 -48.79 10.43 21.65 0.23 -48.57 16 8 Si 0.95 41.36 29.57 68.60 2.03 43.39 16 9 H -0.29 -12.20 7.11 99.48 0.71 -11.49 16 10 H -0.30 -13.69 7.11 99.48 0.71 -12.98 16 11 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 12 C 0.18 7.78 1.92 44.99 0.09 7.86 16 13 H 0.08 3.74 5.91 -2.39 -0.01 3.73 16 14 C -0.13 -5.45 9.03 71.98 0.65 -4.80 16 15 C 0.12 4.59 4.34 86.38 0.37 4.97 16 16 N -0.70 -25.57 4.04 -463.05 -1.87 -27.44 16 17 C 0.52 18.43 5.72 87.66 0.50 18.93 16 18 O -0.57 -23.38 15.58 -3.04 -0.05 -23.43 16 19 C 0.12 3.38 2.07 43.43 0.09 3.47 16 20 H 0.07 1.86 7.94 -2.39 -0.02 1.85 16 21 C -0.09 -2.36 3.50 -19.87 -0.07 -2.43 16 22 C -0.09 -2.55 8.40 22.27 0.19 -2.36 16 23 C -0.13 -2.84 10.05 22.27 0.22 -2.61 16 24 C -0.11 -2.27 10.05 22.27 0.22 -2.05 16 25 C -0.12 -2.68 10.05 22.27 0.22 -2.46 16 26 C -0.11 -2.89 9.67 22.27 0.22 -2.68 16 27 N -0.53 -14.21 4.12 -932.19 -3.84 -18.05 16 28 C 0.02 0.60 9.22 127.69 1.18 1.78 16 29 C 0.03 0.57 9.23 127.69 1.18 1.75 16 30 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.04 1.63 5.01 -2.39 -0.01 1.62 16 33 H 0.03 1.30 8.08 -2.38 -0.02 1.28 16 34 H 0.04 1.57 6.41 -2.39 -0.02 1.56 16 35 H 0.25 13.08 8.31 -92.71 -0.77 12.31 16 36 H 0.05 2.24 7.47 -2.39 -0.02 2.22 16 37 H 0.05 1.79 8.14 -2.39 -0.02 1.78 16 38 H 0.04 1.54 6.64 -2.39 -0.02 1.52 16 39 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 40 H 0.05 1.88 7.00 -2.39 -0.02 1.86 16 41 H 0.41 15.37 7.87 -92.70 -0.73 14.64 16 42 H 0.11 3.42 7.91 -2.91 -0.02 3.39 16 43 H 0.14 2.43 8.06 -2.91 -0.02 2.40 16 44 H 0.15 2.08 8.06 -2.91 -0.02 2.06 16 45 H 0.14 2.47 8.06 -2.91 -0.02 2.45 16 46 H 0.12 3.00 8.00 -2.91 -0.02 2.98 16 47 H 0.09 1.88 8.13 -2.39 -0.02 1.86 16 48 H 0.03 0.73 8.14 -2.38 -0.02 0.71 16 49 H 0.05 1.58 6.44 -2.39 -0.02 1.57 16 50 H 0.03 0.61 8.14 -2.39 -0.02 0.59 16 51 H 0.07 1.50 6.23 -2.38 -0.01 1.48 16 52 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -58.20 406.34 2.86 -55.33 By element: Atomic # 1 Polarization: 37.76 SS G_CDS: 0.17 Total: 37.92 kcal Atomic # 6 Polarization: 0.68 SS G_CDS: 7.46 Total: 8.14 kcal Atomic # 7 Polarization: -114.60 SS G_CDS: -6.75 Total: -121.35 kcal Atomic # 8 Polarization: -23.38 SS G_CDS: -0.05 Total: -23.43 kcal Atomic # 14 Polarization: 41.36 SS G_CDS: 2.03 Total: 43.39 kcal Total: -58.20 2.86 -55.33 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157118541.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.209 kcal (2) G-P(sol) polarization free energy of solvation -58.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds