Wall clock time and date at job start Tue Mar 31 2020 18:32:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46496 * 109.47378 * 2 1 4 4 C 1.36929 * 120.00605 * 84.76874 * 3 2 1 5 5 H 1.08006 * 119.99620 * 33.20476 * 4 3 2 6 6 C 1.38815 * 120.00500 * 213.48579 * 4 3 2 7 7 N 1.31613 * 119.99845 * 14.14037 * 6 4 3 8 8 Si 1.86798 * 119.99880 * 194.14713 * 6 4 3 9 9 H 1.48502 * 109.47201 * 89.99984 * 8 6 4 10 10 H 1.48507 * 109.46608 * 209.99434 * 8 6 4 11 11 H 1.48494 * 109.47363 * 329.99390 * 8 6 4 12 12 C 1.46505 * 119.99750 * 264.76761 * 3 2 1 13 13 H 1.09004 * 109.47264 * 181.29547 * 12 3 2 14 14 C 1.53005 * 109.47021 * 61.29894 * 12 3 2 15 15 C 1.52998 * 109.47576 * 301.29930 * 12 3 2 16 16 N 1.46500 * 109.46923 * 305.00409 * 15 12 3 17 17 C 1.34777 * 120.00005 * 179.97438 * 16 15 12 18 18 O 1.21283 * 119.99976 * 359.97438 * 17 16 15 19 19 C 1.50702 * 119.99878 * 179.97438 * 17 16 15 20 20 H 1.08996 * 109.46877 * 40.00628 * 19 17 16 21 21 C 1.50698 * 109.47426 * 280.00068 * 19 17 16 22 22 C 1.38236 * 119.99729 * 287.27886 * 21 19 17 23 23 C 1.38238 * 119.99719 * 179.78927 * 22 21 19 24 24 C 1.38237 * 120.00031 * 0.43993 * 23 22 21 25 25 C 1.38237 * 119.99752 * 359.81318 * 24 23 22 26 26 C 1.38224 * 120.00007 * 107.55276 * 21 19 17 27 27 N 1.46905 * 109.46902 * 159.99788 * 19 17 16 28 28 C 1.46892 * 111.00087 * 173.07923 * 27 19 17 29 29 C 1.46900 * 111.00128 * 297.03750 * 27 19 17 30 30 H 1.09003 * 109.47498 * 300.00527 * 1 2 3 31 31 H 1.08998 * 109.47279 * 59.99937 * 1 2 3 32 32 H 1.09001 * 109.47796 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.47498 * 239.99472 * 2 1 3 34 34 H 1.08998 * 109.47279 * 120.00063 * 2 1 3 35 35 H 0.97002 * 120.00495 * 180.02562 * 7 6 4 36 36 H 1.09001 * 109.46788 * 60.00108 * 14 12 3 37 37 H 1.08993 * 109.47068 * 179.97438 * 14 12 3 38 38 H 1.08992 * 109.47041 * 300.00293 * 14 12 3 39 39 H 1.09001 * 109.47174 * 64.99636 * 15 12 3 40 40 H 1.08995 * 109.47534 * 185.00177 * 15 12 3 41 41 H 0.97008 * 120.00140 * 359.97438 * 16 15 12 42 42 H 1.08001 * 120.00475 * 359.97438 * 22 21 19 43 43 H 1.08003 * 120.00017 * 180.27570 * 23 22 21 44 44 H 1.08001 * 119.99557 * 179.83821 * 24 23 22 45 45 H 1.07999 * 119.99759 * 179.97438 * 25 24 23 46 46 H 1.07999 * 120.00308 * 359.97438 * 26 21 19 47 47 H 1.09000 * 109.47459 * 63.30874 * 28 27 19 48 48 H 1.09003 * 109.47453 * 183.31211 * 28 27 19 49 49 H 1.09008 * 109.47138 * 303.31260 * 28 27 19 50 50 H 1.08993 * 109.47344 * 59.99455 * 29 27 19 51 51 H 1.09000 * 109.47160 * 180.02562 * 29 27 19 52 52 H 1.08999 * 109.46756 * 299.99490 * 29 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1447 2.0628 1.1808 5 1 2.4158 1.5344 2.0830 6 6 1.9186 3.4319 1.2197 7 7 1.3206 4.0290 0.2107 8 14 2.4631 4.4266 2.7040 9 1 3.8503 4.9127 2.4924 10 1 1.5538 5.5871 2.8827 11 1 2.4180 3.5711 3.9169 12 6 2.3716 2.0331 -1.2635 13 1 2.7335 3.0417 -1.0633 14 6 1.1363 2.1040 -2.1637 15 6 3.4676 1.2277 -1.9641 16 7 4.6049 1.0581 -1.0563 17 6 5.6943 0.3757 -1.4612 18 8 5.7330 -0.0983 -2.5769 19 6 6.8644 0.2017 -0.5275 20 1 6.4988 0.0075 0.4808 21 6 7.6976 1.4574 -0.5268 22 6 8.4824 1.7667 -1.6219 23 6 9.2434 2.9208 -1.6230 24 6 9.2265 3.7609 -0.5253 25 6 8.4457 3.4488 0.5719 26 6 7.6814 2.2969 0.5712 27 7 7.6854 -0.9306 -0.9771 28 6 8.9216 -1.0298 -0.1899 29 6 6.9250 -2.1863 -0.9236 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3635 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8899 35 1 1.1629 4.9857 0.2376 36 1 0.3555 2.6779 -1.6645 37 1 1.3991 2.5895 -3.1035 38 1 0.7744 1.0956 -2.3639 39 1 3.0770 0.2493 -2.2439 40 1 3.7929 1.7584 -2.8589 41 1 4.5738 1.4369 -0.1638 42 1 8.4988 1.1083 -2.4779 43 1 9.8531 3.1648 -2.4804 44 1 9.8231 4.6612 -0.5252 45 1 8.4328 4.1049 1.4297 46 1 7.0714 2.0532 1.4284 47 1 8.6737 -1.2330 0.8518 48 1 9.5377 -1.8393 -0.5814 49 1 9.4709 -0.0905 -0.2561 50 1 6.0510 -2.1097 -1.5704 51 1 7.5564 -3.0081 -1.2612 52 1 6.6034 -2.3729 0.1010 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157118542.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:52 Heat of formation + Delta-G solvation = 20.517637 kcal Electronic energy + Delta-G solvation = -30695.969733 eV Core-core repulsion = 26889.383378 eV Total energy + Delta-G solvation = -3806.586355 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.24156 -38.58218 -37.14415 -36.30641 -33.69637 -31.98911 -31.80039 -30.82515 -30.67416 -28.34176 -27.96728 -27.14766 -25.17218 -23.93458 -22.79557 -22.32568 -21.64619 -21.35149 -19.59245 -19.14416 -17.21956 -16.95008 -16.53379 -16.01591 -15.61475 -15.01937 -14.76335 -14.67323 -14.33945 -14.32852 -14.05931 -13.82657 -13.46365 -13.28565 -12.90295 -12.81680 -12.58438 -12.44304 -12.28812 -12.14139 -11.94471 -11.84068 -11.62144 -11.47701 -11.40099 -11.27373 -11.03576 -10.96160 -10.92487 -10.85475 -10.47180 -10.29267 -9.95727 -9.59848 -9.51341 -9.50304 -8.84128 -8.59778 -8.54413 -8.37362 -8.29181 -6.68539 -5.88316 -3.37954 1.32633 1.48252 3.08618 3.29113 3.37294 3.38498 3.49150 3.77330 4.27905 4.40668 4.72050 4.92596 5.06001 5.13448 5.20213 5.24849 5.29070 5.30706 5.36517 5.40369 5.52355 5.59505 5.62763 5.69384 5.85067 5.93314 5.98030 6.05695 6.11763 6.12998 6.17075 6.36212 6.45598 6.49498 6.51205 6.56482 6.57064 6.59382 6.69282 6.74992 6.78983 6.91286 6.97857 7.00715 7.05547 7.12782 7.27585 7.52925 7.61368 7.75132 8.20306 8.42596 8.78976 9.15586 9.76326 10.33328 11.18292 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.010260 B = 0.004644 C = 0.003760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2728.271820 B = 6027.360339 C = 7444.182467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.143 3.857 3 N -0.582 5.582 4 C -0.261 4.261 5 H 0.063 0.937 6 C 0.012 3.988 7 N -0.891 5.891 8 Si 0.896 3.104 9 H -0.286 1.286 10 H -0.291 1.291 11 H -0.280 1.280 12 C 0.178 3.822 13 H 0.102 0.898 14 C -0.143 4.143 15 C 0.104 3.896 16 N -0.701 5.701 17 C 0.516 3.484 18 O -0.537 6.537 19 C 0.108 3.892 20 H 0.067 0.933 21 C -0.079 4.079 22 C -0.084 4.084 23 C -0.127 4.127 24 C -0.118 4.118 25 C -0.121 4.121 26 C -0.106 4.106 27 N -0.519 5.519 28 C 0.023 3.977 29 C 0.022 3.978 30 H 0.052 0.948 31 H 0.050 0.950 32 H 0.026 0.974 33 H 0.036 0.964 34 H 0.034 0.966 35 H 0.254 0.746 36 H 0.079 0.921 37 H 0.029 0.971 38 H 0.030 0.970 39 H 0.052 0.948 40 H 0.052 0.948 41 H 0.409 0.591 42 H 0.132 0.868 43 H 0.120 0.880 44 H 0.119 0.881 45 H 0.122 0.878 46 H 0.124 0.876 47 H 0.024 0.976 48 H 0.069 0.931 49 H 0.072 0.928 50 H 0.080 0.920 51 H 0.069 0.931 52 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.194 -5.208 -0.646 14.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.017 3.983 3 N -0.303 5.303 4 C -0.391 4.391 5 H 0.081 0.919 6 C -0.188 4.188 7 N -0.534 5.534 8 Si 0.726 3.274 9 H -0.213 1.213 10 H -0.218 1.218 11 H -0.205 1.205 12 C 0.070 3.930 13 H 0.120 0.880 14 C -0.202 4.202 15 C -0.022 4.022 16 N -0.351 5.351 17 C 0.300 3.700 18 O -0.415 6.415 19 C -0.004 4.004 20 H 0.085 0.915 21 C -0.080 4.080 22 C -0.103 4.103 23 C -0.145 4.145 24 C -0.136 4.136 25 C -0.139 4.139 26 C -0.125 4.125 27 N -0.242 5.242 28 C -0.125 4.125 29 C -0.125 4.125 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.046 0.954 33 H 0.054 0.946 34 H 0.053 0.947 35 H 0.064 0.936 36 H 0.098 0.902 37 H 0.048 0.952 38 H 0.049 0.951 39 H 0.070 0.930 40 H 0.071 0.929 41 H 0.245 0.755 42 H 0.149 0.851 43 H 0.138 0.862 44 H 0.137 0.863 45 H 0.140 0.860 46 H 0.142 0.858 47 H 0.043 0.957 48 H 0.088 0.912 49 H 0.091 0.909 50 H 0.099 0.901 51 H 0.088 0.912 52 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 13.271 -5.302 -1.944 14.422 hybrid contribution -0.252 0.719 2.093 2.228 sum 13.019 -4.583 0.149 13.803 Atomic orbital electron populations 1.22390 0.99794 0.98276 1.02118 1.20777 0.91913 0.87697 0.97907 1.43929 1.73929 1.09760 1.02719 1.19109 1.41354 0.90428 0.88179 0.91908 1.25159 0.98115 0.98354 0.97147 1.69960 1.42353 1.09707 1.31410 0.86403 0.78181 0.79989 0.82846 1.21317 1.21779 1.20506 1.20503 0.90445 0.97006 0.85009 0.88045 1.22106 1.00714 0.99411 0.97972 1.22102 0.87187 1.00488 0.92387 1.45919 1.15758 1.54392 1.19074 1.20056 0.83102 0.78968 0.87899 1.90642 1.81212 1.49057 1.20559 1.20504 0.92179 0.90381 0.97290 0.91523 1.19360 0.98226 0.95271 0.95127 1.21096 0.94854 0.96374 0.97955 1.21154 1.00035 0.94923 0.98388 1.21165 0.99226 0.99365 0.93837 1.21082 0.97139 0.96955 0.98708 1.21099 0.98863 0.94680 0.97854 1.61690 1.05580 1.02715 1.54260 1.22450 0.92120 1.02875 0.95027 1.22463 0.99365 0.90736 0.99986 0.92930 0.93117 0.95449 0.94594 0.94725 0.93564 0.90236 0.95155 0.95132 0.93020 0.92931 0.75468 0.85054 0.86162 0.86305 0.86000 0.85815 0.95728 0.91211 0.90886 0.90124 0.91223 0.95864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.20 10.01 37.15 0.37 -2.83 16 2 C 0.14 2.86 5.68 -4.05 -0.02 2.84 16 3 N -0.58 -12.83 1.84 -165.66 -0.30 -13.13 16 4 C -0.26 -6.35 9.35 -15.06 -0.14 -6.49 16 5 H 0.06 1.54 7.87 -52.48 -0.41 1.13 16 6 C 0.01 0.31 4.93 -17.43 -0.09 0.22 16 7 N -0.89 -23.37 10.32 55.49 0.57 -22.80 16 8 Si 0.90 20.12 29.58 -169.99 -5.03 15.09 16 9 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 10 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 11 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 12 C 0.18 3.79 1.92 -67.93 -0.13 3.66 16 13 H 0.10 2.48 6.01 -51.93 -0.31 2.17 16 14 C -0.14 -2.94 8.14 37.16 0.30 -2.63 16 15 C 0.10 2.01 4.91 -4.04 -0.02 2.00 16 16 N -0.70 -12.87 5.39 -60.30 -0.32 -13.19 16 17 C 0.52 9.16 6.16 -10.98 -0.07 9.10 16 18 O -0.54 -10.96 15.24 5.56 0.08 -10.88 16 19 C 0.11 1.59 2.08 -70.01 -0.15 1.45 16 20 H 0.07 0.94 7.93 -51.93 -0.41 0.53 16 21 C -0.08 -1.11 3.47 -104.63 -0.36 -1.47 16 22 C -0.08 -1.16 8.27 -39.58 -0.33 -1.49 16 23 C -0.13 -1.53 10.05 -39.58 -0.40 -1.92 16 24 C -0.12 -1.35 10.05 -39.58 -0.40 -1.75 16 25 C -0.12 -1.48 10.05 -39.58 -0.40 -1.87 16 26 C -0.11 -1.41 9.67 -39.59 -0.38 -1.80 16 27 N -0.52 -7.10 4.15 -246.00 -1.02 -8.12 16 28 C 0.02 0.26 9.19 60.06 0.55 0.81 16 29 C 0.02 0.29 9.23 60.06 0.55 0.85 16 30 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 31 H 0.05 1.00 6.00 -51.93 -0.31 0.69 16 32 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.04 0.69 6.47 -51.93 -0.34 0.35 16 34 H 0.03 0.68 8.08 -51.93 -0.42 0.26 16 35 H 0.25 6.61 8.31 -40.82 -0.34 6.27 16 36 H 0.08 1.86 7.28 -51.93 -0.38 1.48 16 37 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.03 0.58 6.53 -51.93 -0.34 0.25 16 39 H 0.05 1.02 6.82 -51.93 -0.35 0.67 16 40 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.41 7.68 7.96 -40.82 -0.32 7.36 16 42 H 0.13 1.92 7.94 -52.49 -0.42 1.51 16 43 H 0.12 1.19 8.06 -52.48 -0.42 0.76 16 44 H 0.12 1.09 8.06 -52.49 -0.42 0.66 16 45 H 0.12 1.28 8.06 -52.49 -0.42 0.85 16 46 H 0.12 1.54 7.99 -52.49 -0.42 1.12 16 47 H 0.02 0.26 8.14 -51.93 -0.42 -0.17 16 48 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 49 H 0.07 0.82 6.10 -51.92 -0.32 0.51 16 50 H 0.08 1.23 6.34 -51.93 -0.33 0.91 16 51 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 52 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 LS Contribution 407.91 15.07 6.15 6.15 Total: -1.00 -27.39 407.91 -9.84 -37.23 By element: Atomic # 1 Polarization: 19.88 SS G_CDS: -8.87 Total: 11.02 kcal Atomic # 6 Polarization: -0.26 SS G_CDS: -1.10 Total: -1.35 kcal Atomic # 7 Polarization: -56.17 SS G_CDS: -1.08 Total: -57.25 kcal Atomic # 8 Polarization: -10.96 SS G_CDS: 0.08 Total: -10.88 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.03 Total: 15.09 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -27.39 -9.84 -37.23 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157118542.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.743 kcal (2) G-P(sol) polarization free energy of solvation -27.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.226 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds