Wall clock time and date at job start Tue Mar 31 2020 18:32:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46496 * 109.47378 * 2 1 4 4 C 1.36929 * 120.00605 * 84.76874 * 3 2 1 5 5 H 1.08006 * 119.99620 * 33.20476 * 4 3 2 6 6 C 1.38815 * 120.00500 * 213.48579 * 4 3 2 7 7 N 1.31613 * 119.99845 * 14.14037 * 6 4 3 8 8 Si 1.86798 * 119.99880 * 194.14713 * 6 4 3 9 9 H 1.48502 * 109.47201 * 89.99984 * 8 6 4 10 10 H 1.48507 * 109.46608 * 209.99434 * 8 6 4 11 11 H 1.48494 * 109.47363 * 329.99390 * 8 6 4 12 12 C 1.46505 * 119.99750 * 264.76761 * 3 2 1 13 13 H 1.09004 * 109.47264 * 181.29547 * 12 3 2 14 14 C 1.53005 * 109.47021 * 61.29894 * 12 3 2 15 15 C 1.52998 * 109.47576 * 301.29930 * 12 3 2 16 16 N 1.46500 * 109.46923 * 305.00409 * 15 12 3 17 17 C 1.34777 * 120.00005 * 179.97438 * 16 15 12 18 18 O 1.21283 * 119.99976 * 359.97438 * 17 16 15 19 19 C 1.50702 * 119.99878 * 179.97438 * 17 16 15 20 20 H 1.08996 * 109.46877 * 40.00628 * 19 17 16 21 21 C 1.50698 * 109.47426 * 280.00068 * 19 17 16 22 22 C 1.38236 * 119.99729 * 287.27886 * 21 19 17 23 23 C 1.38238 * 119.99719 * 179.78927 * 22 21 19 24 24 C 1.38237 * 120.00031 * 0.43993 * 23 22 21 25 25 C 1.38237 * 119.99752 * 359.81318 * 24 23 22 26 26 C 1.38224 * 120.00007 * 107.55276 * 21 19 17 27 27 N 1.46905 * 109.46902 * 159.99788 * 19 17 16 28 28 C 1.46892 * 111.00087 * 173.07923 * 27 19 17 29 29 C 1.46900 * 111.00128 * 297.03750 * 27 19 17 30 30 H 1.09003 * 109.47498 * 300.00527 * 1 2 3 31 31 H 1.08998 * 109.47279 * 59.99937 * 1 2 3 32 32 H 1.09001 * 109.47796 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.47498 * 239.99472 * 2 1 3 34 34 H 1.08998 * 109.47279 * 120.00063 * 2 1 3 35 35 H 0.97002 * 120.00495 * 180.02562 * 7 6 4 36 36 H 1.09001 * 109.46788 * 60.00108 * 14 12 3 37 37 H 1.08993 * 109.47068 * 179.97438 * 14 12 3 38 38 H 1.08992 * 109.47041 * 300.00293 * 14 12 3 39 39 H 1.09001 * 109.47174 * 64.99636 * 15 12 3 40 40 H 1.08995 * 109.47534 * 185.00177 * 15 12 3 41 41 H 0.97008 * 120.00140 * 359.97438 * 16 15 12 42 42 H 1.08001 * 120.00475 * 359.97438 * 22 21 19 43 43 H 1.08003 * 120.00017 * 180.27570 * 23 22 21 44 44 H 1.08001 * 119.99557 * 179.83821 * 24 23 22 45 45 H 1.07999 * 119.99759 * 179.97438 * 25 24 23 46 46 H 1.07999 * 120.00308 * 359.97438 * 26 21 19 47 47 H 1.09000 * 109.47459 * 63.30874 * 28 27 19 48 48 H 1.09003 * 109.47453 * 183.31211 * 28 27 19 49 49 H 1.09008 * 109.47138 * 303.31260 * 28 27 19 50 50 H 1.08993 * 109.47344 * 59.99455 * 29 27 19 51 51 H 1.09000 * 109.47160 * 180.02562 * 29 27 19 52 52 H 1.08999 * 109.46756 * 299.99490 * 29 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1447 2.0628 1.1808 5 1 2.4158 1.5344 2.0830 6 6 1.9186 3.4319 1.2197 7 7 1.3206 4.0290 0.2107 8 14 2.4631 4.4266 2.7040 9 1 3.8503 4.9127 2.4924 10 1 1.5538 5.5871 2.8827 11 1 2.4180 3.5711 3.9169 12 6 2.3716 2.0331 -1.2635 13 1 2.7335 3.0417 -1.0633 14 6 1.1363 2.1040 -2.1637 15 6 3.4676 1.2277 -1.9641 16 7 4.6049 1.0581 -1.0563 17 6 5.6943 0.3757 -1.4612 18 8 5.7330 -0.0983 -2.5769 19 6 6.8644 0.2017 -0.5275 20 1 6.4988 0.0075 0.4808 21 6 7.6976 1.4574 -0.5268 22 6 8.4824 1.7667 -1.6219 23 6 9.2434 2.9208 -1.6230 24 6 9.2265 3.7609 -0.5253 25 6 8.4457 3.4488 0.5719 26 6 7.6814 2.2969 0.5712 27 7 7.6854 -0.9306 -0.9771 28 6 8.9216 -1.0298 -0.1899 29 6 6.9250 -2.1863 -0.9236 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3635 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8899 35 1 1.1629 4.9857 0.2376 36 1 0.3555 2.6779 -1.6645 37 1 1.3991 2.5895 -3.1035 38 1 0.7744 1.0956 -2.3639 39 1 3.0770 0.2493 -2.2439 40 1 3.7929 1.7584 -2.8589 41 1 4.5738 1.4369 -0.1638 42 1 8.4988 1.1083 -2.4779 43 1 9.8531 3.1648 -2.4804 44 1 9.8231 4.6612 -0.5252 45 1 8.4328 4.1049 1.4297 46 1 7.0714 2.0532 1.4284 47 1 8.6737 -1.2330 0.8518 48 1 9.5377 -1.8393 -0.5814 49 1 9.4709 -0.0905 -0.2561 50 1 6.0510 -2.1097 -1.5704 51 1 7.5564 -3.0081 -1.2612 52 1 6.6034 -2.3729 0.1010 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157118542.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:51 Heat of formation + Delta-G solvation = 6.130430 kcal Electronic energy + Delta-G solvation = -30696.593609 eV Core-core repulsion = 26889.383378 eV Total energy + Delta-G solvation = -3807.210231 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.45329 -39.80836 -38.66996 -37.54478 -35.27582 -33.73641 -33.03472 -32.19994 -31.78056 -30.10551 -29.07773 -28.17489 -26.67714 -25.73983 -23.80124 -23.32643 -23.26869 -22.55028 -21.10959 -20.66651 -18.86994 -18.16427 -17.78671 -17.32181 -16.74040 -16.56453 -16.25264 -16.19439 -15.55053 -15.49926 -15.27782 -15.23921 -14.95353 -14.39714 -14.27327 -14.09445 -13.98005 -13.73562 -13.55401 -13.37418 -13.23768 -13.15351 -13.06824 -12.95711 -12.85789 -12.78062 -12.63485 -12.51117 -12.18675 -12.06941 -11.92968 -11.91674 -11.74841 -11.27752 -11.25819 -10.88916 -10.44356 -9.89444 -9.81401 -9.62357 -9.35689 -8.51908 -7.79340 -5.29782 0.34360 0.50663 1.49944 1.53791 1.59213 1.69797 2.20285 2.55820 2.77721 3.14860 3.36724 3.62398 3.68269 3.90520 3.93026 4.14366 4.19206 4.27025 4.29920 4.32978 4.42115 4.47421 4.53841 4.60672 4.65193 4.68158 4.72357 4.74961 4.85475 4.89541 4.91775 5.00102 5.00620 5.02687 5.03730 5.10097 5.16694 5.17618 5.34613 5.54967 5.55355 5.59376 5.61437 5.62101 5.75889 5.77254 5.87366 5.92953 6.03989 6.09861 6.52281 6.73039 7.26237 7.34391 7.94305 8.46570 9.24898 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.010260 B = 0.004644 C = 0.003760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2728.271820 B = 6027.360339 C = 7444.182467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.143 3.857 3 N -0.588 5.588 4 C -0.258 4.258 5 H 0.062 0.938 6 C -0.030 4.030 7 N -0.914 5.914 8 Si 0.949 3.051 9 H -0.282 1.282 10 H -0.304 1.304 11 H -0.274 1.274 12 C 0.185 3.815 13 H 0.071 0.929 14 C -0.132 4.132 15 C 0.117 3.883 16 N -0.701 5.701 17 C 0.517 3.483 18 O -0.566 6.566 19 C 0.117 3.883 20 H 0.072 0.928 21 C -0.090 4.090 22 C -0.098 4.098 23 C -0.128 4.128 24 C -0.116 4.116 25 C -0.127 4.127 26 C -0.119 4.119 27 N -0.532 5.532 28 C 0.027 3.973 29 C 0.025 3.975 30 H 0.029 0.971 31 H 0.041 0.959 32 H 0.057 0.943 33 H 0.046 0.954 34 H 0.038 0.962 35 H 0.247 0.753 36 H 0.049 0.951 37 H 0.043 0.957 38 H 0.042 0.958 39 H 0.051 0.949 40 H 0.049 0.951 41 H 0.408 0.592 42 H 0.117 0.883 43 H 0.141 0.859 44 H 0.147 0.853 45 H 0.140 0.860 46 H 0.128 0.872 47 H 0.032 0.968 48 H 0.085 0.915 49 H 0.069 0.931 50 H 0.052 0.948 51 H 0.088 0.912 52 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.797 -5.632 0.039 15.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.017 3.983 3 N -0.310 5.310 4 C -0.388 4.388 5 H 0.079 0.921 6 C -0.228 4.228 7 N -0.559 5.559 8 Si 0.779 3.221 9 H -0.209 1.209 10 H -0.231 1.231 11 H -0.199 1.199 12 C 0.078 3.922 13 H 0.089 0.911 14 C -0.191 4.191 15 C -0.009 4.009 16 N -0.352 5.352 17 C 0.303 3.697 18 O -0.445 6.445 19 C 0.005 3.995 20 H 0.089 0.911 21 C -0.091 4.091 22 C -0.116 4.116 23 C -0.146 4.146 24 C -0.134 4.134 25 C -0.144 4.144 26 C -0.137 4.137 27 N -0.257 5.257 28 C -0.120 4.120 29 C -0.122 4.122 30 H 0.048 0.952 31 H 0.060 0.940 32 H 0.076 0.924 33 H 0.064 0.936 34 H 0.057 0.943 35 H 0.056 0.944 36 H 0.068 0.932 37 H 0.062 0.938 38 H 0.061 0.939 39 H 0.069 0.931 40 H 0.067 0.933 41 H 0.244 0.756 42 H 0.135 0.865 43 H 0.159 0.841 44 H 0.164 0.836 45 H 0.158 0.842 46 H 0.146 0.854 47 H 0.050 0.950 48 H 0.104 0.896 49 H 0.088 0.912 50 H 0.071 0.929 51 H 0.107 0.893 52 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 14.889 -5.752 -1.247 16.011 hybrid contribution -0.723 0.815 1.855 2.152 sum 14.167 -4.937 0.608 15.015 Atomic orbital electron populations 1.22260 0.99088 0.99743 1.00491 1.20847 0.92378 0.86488 0.98558 1.44012 1.74275 1.10374 1.02357 1.19264 1.40162 0.90599 0.88802 0.92078 1.25691 0.98749 0.99255 0.99081 1.70104 1.43755 1.09216 1.32809 0.85557 0.77499 0.78324 0.80731 1.20899 1.23123 1.19938 1.20315 0.91134 0.95666 0.85079 0.91109 1.21950 0.99480 0.99679 0.98021 1.21825 0.87027 0.99851 0.92149 1.45908 1.15841 1.54670 1.18742 1.20587 0.83392 0.77789 0.87957 1.90620 1.81754 1.50103 1.22000 1.20384 0.91256 0.91515 0.96329 0.91057 1.19334 0.98707 0.95266 0.95771 1.21072 0.95858 0.97158 0.97541 1.21425 0.99619 0.94185 0.99379 1.21510 0.98819 0.99973 0.93094 1.21388 0.96701 0.96710 0.99644 1.21245 0.99455 0.95158 0.97858 1.61682 1.06220 1.02532 1.55229 1.22462 0.90959 1.03371 0.95197 1.22421 0.98770 0.91139 0.99913 0.95206 0.93986 0.92412 0.93570 0.94349 0.94387 0.93167 0.93842 0.93927 0.93074 0.93265 0.75647 0.86518 0.84085 0.83560 0.84218 0.85433 0.94957 0.89591 0.91192 0.92865 0.89296 0.94995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.85 10.01 71.98 0.72 -5.13 16 2 C 0.14 5.55 5.68 86.38 0.49 6.04 16 3 N -0.59 -25.86 1.84 -678.04 -1.25 -27.11 16 4 C -0.26 -12.53 9.35 84.04 0.79 -11.74 16 5 H 0.06 2.96 7.87 -2.91 -0.02 2.94 16 6 C -0.03 -1.53 4.93 84.86 0.42 -1.11 16 7 N -0.91 -48.79 10.32 21.65 0.22 -48.57 16 8 Si 0.95 41.43 29.58 68.60 2.03 43.46 16 9 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 10 H -0.30 -13.83 7.11 99.48 0.71 -13.12 16 11 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 12 C 0.19 7.96 1.92 44.99 0.09 8.04 16 13 H 0.07 3.53 6.01 -2.39 -0.01 3.52 16 14 C -0.13 -5.44 8.14 71.98 0.59 -4.85 16 15 C 0.12 4.55 4.91 86.38 0.42 4.97 16 16 N -0.70 -25.78 5.39 -463.06 -2.49 -28.27 16 17 C 0.52 18.38 6.16 87.66 0.54 18.92 16 18 O -0.57 -23.26 15.24 -3.04 -0.05 -23.31 16 19 C 0.12 3.38 2.08 43.42 0.09 3.47 16 20 H 0.07 1.97 7.93 -2.39 -0.02 1.95 16 21 C -0.09 -2.46 3.47 -19.87 -0.07 -2.53 16 22 C -0.10 -2.62 8.27 22.27 0.18 -2.44 16 23 C -0.13 -2.85 10.05 22.27 0.22 -2.62 16 24 C -0.12 -2.37 10.05 22.27 0.22 -2.15 16 25 C -0.13 -2.82 10.05 22.27 0.22 -2.60 16 26 C -0.12 -3.01 9.67 22.27 0.22 -2.79 16 27 N -0.53 -14.11 4.15 -932.22 -3.86 -17.97 16 28 C 0.03 0.56 9.19 127.69 1.17 1.74 16 29 C 0.03 0.63 9.23 127.69 1.18 1.81 16 30 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.04 1.62 6.00 -2.39 -0.01 1.61 16 32 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.05 1.70 6.47 -2.39 -0.02 1.69 16 34 H 0.04 1.46 8.08 -2.39 -0.02 1.44 16 35 H 0.25 13.11 8.31 -92.71 -0.77 12.34 16 36 H 0.05 2.37 7.28 -2.39 -0.02 2.35 16 37 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.04 1.61 6.53 -2.39 -0.02 1.60 16 39 H 0.05 1.99 6.82 -2.39 -0.02 1.98 16 40 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 41 H 0.41 15.32 7.96 -92.70 -0.74 14.58 16 42 H 0.12 3.43 7.94 -2.91 -0.02 3.41 16 43 H 0.14 2.46 8.06 -2.91 -0.02 2.43 16 44 H 0.15 2.15 8.06 -2.91 -0.02 2.13 16 45 H 0.14 2.56 8.06 -2.91 -0.02 2.53 16 46 H 0.13 3.04 7.99 -2.91 -0.02 3.01 16 47 H 0.03 0.61 8.14 -2.39 -0.02 0.59 16 48 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 49 H 0.07 1.48 6.10 -2.38 -0.01 1.47 16 50 H 0.05 1.62 6.34 -2.39 -0.02 1.61 16 51 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 52 H 0.03 0.72 8.14 -2.39 -0.02 0.71 16 Total: -1.00 -58.72 407.91 2.25 -56.47 By element: Atomic # 1 Polarization: 38.13 SS G_CDS: 0.16 Total: 38.28 kcal Atomic # 6 Polarization: -0.46 SS G_CDS: 7.50 Total: 7.03 kcal Atomic # 7 Polarization: -114.54 SS G_CDS: -7.38 Total: -121.92 kcal Atomic # 8 Polarization: -23.26 SS G_CDS: -0.05 Total: -23.31 kcal Atomic # 14 Polarization: 41.43 SS G_CDS: 2.03 Total: 43.46 kcal Total: -58.72 2.25 -56.47 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157118542.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.597 kcal (2) G-P(sol) polarization free energy of solvation -58.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.466 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds