Wall clock time and date at job start Tue Mar 31 2020 18:11:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46498 * 109.47345 * 2 1 4 4 C 1.46502 * 119.99697 * 269.99950 * 3 2 1 5 5 C 1.39046 * 119.99848 * 89.99844 * 3 2 1 6 6 C 1.39220 * 119.92805 * 180.02562 * 5 3 2 7 7 C 1.37604 * 120.07076 * 180.02562 * 6 5 3 8 8 C 1.39802 * 119.92834 * 359.97438 * 7 6 5 9 9 C 1.47528 * 120.06724 * 180.02562 * 8 7 6 10 10 O 1.21596 * 119.99976 * 0.02562 * 9 8 7 11 11 N 1.34769 * 119.99754 * 179.97438 * 9 8 7 12 12 C 1.46498 * 119.99991 * 179.97438 * 11 9 8 13 13 C 1.53002 * 109.47360 * 180.02562 * 12 11 9 14 14 H 1.09003 * 109.46831 * 65.00372 * 13 12 11 15 15 C 1.53004 * 109.47359 * 184.99931 * 13 12 11 16 16 N 1.46495 * 109.47333 * 305.00430 * 13 12 11 17 17 C 1.36940 * 120.00016 * 117.15258 * 16 13 12 18 18 H 1.07997 * 119.99801 * 214.08806 * 17 16 13 19 19 C 1.38803 * 119.99957 * 34.09285 * 17 16 13 20 20 N 1.31620 * 120.00387 * 17.01041 * 19 17 16 21 21 Si 1.86799 * 120.00186 * 197.01216 * 19 17 16 22 22 H 1.48499 * 109.47506 * 89.99722 * 21 19 17 23 23 H 1.48493 * 109.47505 * 210.00093 * 21 19 17 24 24 H 1.48508 * 109.47053 * 329.99922 * 21 19 17 25 25 C 1.46504 * 119.99748 * 297.15459 * 16 13 12 26 26 C 1.53000 * 109.46802 * 95.91415 * 25 16 13 27 27 C 1.39790 * 119.86159 * 0.27469 * 8 7 6 28 28 C 1.37611 * 119.92877 * 359.47161 * 27 8 7 29 29 H 1.09004 * 109.47568 * 300.00050 * 1 2 3 30 30 H 1.09002 * 109.47348 * 60.00089 * 1 2 3 31 31 H 1.09001 * 109.47385 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.47266 * 239.99509 * 2 1 3 33 33 H 1.09005 * 109.47028 * 120.00319 * 2 1 3 34 34 H 1.09005 * 109.46844 * 269.99468 * 4 3 2 35 35 H 1.08999 * 109.46946 * 30.00012 * 4 3 2 36 36 H 1.09003 * 109.46627 * 150.00058 * 4 3 2 37 37 H 1.08003 * 119.96613 * 0.02562 * 6 5 3 38 38 H 1.07997 * 120.03718 * 179.97438 * 7 6 5 39 39 H 0.97006 * 120.00044 * 0.02562 * 11 9 8 40 40 H 1.09005 * 109.46915 * 60.00392 * 12 11 9 41 41 H 1.09001 * 109.47100 * 300.00270 * 12 11 9 42 42 H 1.09000 * 109.47164 * 300.00725 * 15 13 12 43 43 H 1.09003 * 109.46789 * 60.00416 * 15 13 12 44 44 H 1.09001 * 109.47197 * 180.02562 * 15 13 12 45 45 H 0.97002 * 120.00617 * 180.02562 * 20 19 17 46 46 H 1.08999 * 109.46947 * 215.90715 * 25 16 13 47 47 H 1.08997 * 109.46999 * 335.91258 * 25 16 13 48 48 H 1.09002 * 109.46903 * 180.02562 * 26 25 16 49 49 H 1.09003 * 109.47191 * 299.99647 * 26 25 16 50 50 H 1.08997 * 109.47471 * 60.00132 * 26 25 16 51 51 H 1.08003 * 120.03365 * 179.72376 * 27 8 7 52 52 H 1.08000 * 119.96199 * 180.25236 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0717 -1.2688 5 6 2.2501 2.0366 1.2042 6 6 2.7137 3.3494 1.2025 7 6 2.9445 4.0006 2.3925 8 6 2.7124 3.3428 3.6040 9 6 2.9583 4.0383 4.8816 10 8 3.3628 5.1850 4.8816 11 7 2.7336 3.4030 6.0488 12 6 2.9783 4.0934 7.3175 13 6 2.6473 3.1559 8.4805 14 1 3.3368 2.3117 8.4740 15 6 2.7830 3.9150 9.8020 16 7 1.2741 2.6662 8.3373 17 6 1.0390 1.3283 8.1635 18 1 0.2167 1.0005 7.5448 19 6 1.8573 0.3937 8.7827 20 7 2.6318 0.7570 9.7830 21 14 1.8596 -1.3799 8.1963 22 1 2.8865 -1.5499 7.1372 23 1 2.1715 -2.2780 9.3369 24 1 0.5223 -1.7218 7.6485 25 6 0.1525 3.6076 8.3800 26 6 -0.2452 3.9920 6.9535 27 6 2.2519 2.0230 3.6024 28 6 2.0180 1.3789 2.4090 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.2920 1.9004 -1.5834 35 1 1.5817 1.6876 -2.0284 36 1 2.0956 3.1410 -1.1384 37 1 2.8924 3.8571 0.2662 38 1 3.3045 5.0188 2.3905 39 1 2.4106 2.4883 6.0488 40 1 2.3484 4.9812 7.3754 41 1 4.0264 4.3872 7.3750 42 1 3.8047 4.2794 9.9085 43 1 2.0936 4.7593 9.8084 44 1 2.5476 3.2470 10.6305 45 1 3.2040 0.1039 10.2154 46 1 -0.6956 3.1399 8.8801 47 1 0.4494 4.5019 8.9280 48 1 -1.0795 4.6929 6.9853 49 1 0.6029 4.4598 6.4534 50 1 -0.5422 3.0978 6.4056 51 1 2.0759 1.5106 4.5367 52 1 1.6583 0.3606 2.4071 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157307687.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:58 Heat of formation + Delta-G solvation = 16.007934 kcal Electronic energy + Delta-G solvation = -29905.918446 eV Core-core repulsion = 26099.136535 eV Total energy + Delta-G solvation = -3806.781910 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.00419 -38.79379 -36.93265 -36.19355 -33.59737 -32.10086 -31.84247 -31.04292 -30.71394 -29.60647 -28.13135 -26.58638 -25.40223 -23.91820 -23.56512 -22.15736 -21.68154 -21.14536 -19.55195 -19.22143 -17.95447 -16.96572 -16.51743 -16.18322 -15.32883 -14.97452 -14.89758 -14.74353 -14.66551 -14.09814 -13.96101 -13.71610 -13.65330 -13.27236 -13.11838 -12.80309 -12.63274 -12.52926 -12.38371 -12.27551 -12.14742 -11.97161 -11.90614 -11.74784 -11.47928 -11.33129 -11.03846 -10.94473 -10.80956 -10.70947 -10.61861 -10.26601 -10.03752 -9.86534 -9.59953 -9.40183 -9.30187 -8.89399 -8.50216 -8.27383 -7.35129 -6.63241 -5.86789 -3.36700 1.27663 1.55850 2.89331 3.30355 3.34193 3.38913 3.40016 3.96013 4.23726 4.42225 4.59597 4.70520 4.88215 4.99617 5.01935 5.14646 5.23855 5.27816 5.31677 5.36981 5.43493 5.46702 5.52255 5.52929 5.64090 5.72515 5.93661 5.97292 6.11400 6.14097 6.23115 6.26233 6.32797 6.43506 6.45357 6.55262 6.58623 6.65603 6.69703 6.73133 6.81771 6.87471 6.96720 7.08513 7.19794 7.22666 7.37024 7.51924 7.59882 7.77477 8.32945 8.45961 8.91382 9.17731 9.79314 10.37461 11.19254 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.011365 B = 0.003733 C = 0.003119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2463.010713 B = 7499.471089 C = 8975.653366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.116 3.884 3 N -0.629 5.629 4 C 0.092 3.908 5 C 0.234 3.766 6 C -0.213 4.213 7 C -0.014 4.014 8 C -0.188 4.188 9 C 0.553 3.447 10 O -0.567 6.567 11 N -0.698 5.698 12 C 0.103 3.897 13 C 0.174 3.826 14 H 0.102 0.898 15 C -0.144 4.144 16 N -0.582 5.582 17 C -0.263 4.263 18 H 0.063 0.937 19 C 0.013 3.987 20 N -0.889 5.889 21 Si 0.893 3.107 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.278 1.278 25 C 0.140 3.860 26 C -0.169 4.169 27 C -0.032 4.032 28 C -0.206 4.206 29 H 0.062 0.938 30 H 0.054 0.946 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.048 0.952 35 H 0.064 0.936 36 H 0.070 0.930 37 H 0.124 0.876 38 H 0.131 0.869 39 H 0.409 0.591 40 H 0.053 0.947 41 H 0.051 0.949 42 H 0.034 0.966 43 H 0.031 0.969 44 H 0.074 0.926 45 H 0.254 0.746 46 H 0.040 0.960 47 H 0.037 0.963 48 H 0.032 0.968 49 H 0.051 0.949 50 H 0.046 0.954 51 H 0.131 0.869 52 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.230 0.383 -18.338 18.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.007 4.007 3 N -0.340 5.340 4 C -0.051 4.051 5 C 0.131 3.869 6 C -0.235 4.235 7 C -0.033 4.033 8 C -0.193 4.193 9 C 0.341 3.659 10 O -0.449 6.449 11 N -0.348 5.348 12 C -0.023 4.023 13 C 0.066 3.934 14 H 0.119 0.881 15 C -0.203 4.203 16 N -0.303 5.303 17 C -0.392 4.392 18 H 0.081 0.919 19 C -0.188 4.188 20 N -0.532 5.532 21 Si 0.723 3.277 22 H -0.213 1.213 23 H -0.218 1.218 24 H -0.204 1.204 25 C 0.014 3.986 26 C -0.228 4.228 27 C -0.051 4.051 28 C -0.228 4.228 29 H 0.081 0.919 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.091 0.909 33 H 0.097 0.903 34 H 0.067 0.933 35 H 0.083 0.917 36 H 0.089 0.911 37 H 0.142 0.858 38 H 0.149 0.851 39 H 0.247 0.753 40 H 0.071 0.929 41 H 0.069 0.931 42 H 0.053 0.947 43 H 0.050 0.950 44 H 0.093 0.907 45 H 0.064 0.936 46 H 0.058 0.942 47 H 0.055 0.945 48 H 0.051 0.949 49 H 0.070 0.930 50 H 0.065 0.935 51 H 0.149 0.851 52 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -0.881 0.965 -18.347 18.393 hybrid contribution -0.205 -1.447 -0.278 1.488 sum -1.086 -0.482 -18.625 18.663 Atomic orbital electron populations 1.22234 0.96210 1.02122 1.02660 1.21442 0.94187 0.82238 1.02844 1.46397 1.71053 1.13300 1.03219 1.21643 1.00502 0.97964 0.85034 1.17973 0.91891 0.91318 0.85693 1.20566 1.10437 0.94062 0.98442 1.20955 0.92807 0.99201 0.90370 1.19805 1.10169 0.95535 0.93773 1.18179 0.77788 0.85944 0.83973 1.90695 1.48192 1.17952 1.88023 1.45878 1.65654 1.18246 1.05064 1.22157 0.99097 0.96584 0.84468 1.20532 0.88451 0.95214 0.89194 0.88064 1.21998 0.98429 0.99345 1.00544 1.43863 0.99150 1.02887 1.84433 1.19092 1.14921 0.81442 1.23793 0.91888 1.25161 1.00600 0.97624 0.95391 1.70001 1.28338 1.33835 1.20994 0.86440 0.77952 0.85266 0.78026 1.21284 1.21769 1.20362 1.20767 0.91345 0.93047 0.93432 1.22422 0.99745 0.99896 1.00786 1.21225 0.92681 0.93127 0.98074 1.20594 1.10438 1.01029 0.90747 0.91906 0.92670 0.91682 0.90909 0.90256 0.93329 0.91678 0.91146 0.85813 0.85069 0.75289 0.92908 0.93091 0.94711 0.94981 0.90662 0.93551 0.94186 0.94456 0.94930 0.92985 0.93498 0.85081 0.85633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.32 10.24 37.15 0.38 -0.94 16 2 C 0.12 0.92 5.86 -4.05 -0.02 0.90 16 3 N -0.63 -6.04 2.99 -179.62 -0.54 -6.57 16 4 C 0.09 0.65 10.18 59.85 0.61 1.26 16 5 C 0.23 2.86 6.55 -83.86 -0.55 2.31 16 6 C -0.21 -2.65 9.18 -39.45 -0.36 -3.01 16 7 C -0.01 -0.20 9.58 -39.23 -0.38 -0.58 16 8 C -0.19 -3.12 5.88 -104.95 -0.62 -3.74 16 9 C 0.55 10.72 7.71 -12.48 -0.10 10.63 16 10 O -0.57 -12.44 16.34 5.28 0.09 -12.36 16 11 N -0.70 -13.53 4.23 -61.35 -0.26 -13.79 16 12 C 0.10 2.06 4.36 -4.04 -0.02 2.04 16 13 C 0.17 3.77 1.95 -67.93 -0.13 3.64 16 14 H 0.10 2.50 5.94 -51.93 -0.31 2.19 16 15 C -0.14 -2.96 9.05 37.16 0.34 -2.63 16 16 N -0.58 -13.16 1.88 -165.66 -0.31 -13.47 16 17 C -0.26 -6.48 9.07 -15.06 -0.14 -6.62 16 18 H 0.06 1.57 7.89 -52.49 -0.41 1.15 16 19 C 0.01 0.32 4.86 -17.43 -0.08 0.23 16 20 N -0.89 -23.57 10.90 55.49 0.60 -22.96 16 21 Si 0.89 20.08 29.59 -169.99 -5.03 15.05 16 22 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 23 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 24 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 25 C 0.14 2.88 5.75 -4.04 -0.02 2.86 16 26 C -0.17 -3.16 9.95 37.16 0.37 -2.79 16 27 C -0.03 -0.48 9.53 -39.23 -0.37 -0.85 16 28 C -0.21 -2.71 9.18 -39.45 -0.36 -3.08 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.45 8.07 -51.93 -0.42 0.03 16 33 H 0.08 0.66 6.17 -51.93 -0.32 0.34 16 34 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 35 H 0.06 0.36 8.07 -51.93 -0.42 -0.06 16 36 H 0.07 0.48 6.17 -51.93 -0.32 0.16 16 37 H 0.12 1.24 6.11 -52.48 -0.32 0.92 16 38 H 0.13 1.91 7.64 -52.49 -0.40 1.51 16 39 H 0.41 8.02 5.75 -40.82 -0.23 7.79 16 40 H 0.05 1.09 6.98 -51.93 -0.36 0.72 16 41 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 42 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.03 0.61 6.56 -51.93 -0.34 0.27 16 44 H 0.07 1.74 7.69 -51.93 -0.40 1.34 16 45 H 0.25 6.64 8.31 -40.82 -0.34 6.31 16 46 H 0.04 0.85 8.09 -51.93 -0.42 0.43 16 47 H 0.04 0.74 6.29 -51.93 -0.33 0.41 16 48 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 49 H 0.05 1.02 5.32 -51.93 -0.28 0.74 16 50 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 51 H 0.13 2.02 6.39 -52.48 -0.34 1.69 16 52 H 0.13 1.45 6.11 -52.49 -0.32 1.13 16 LS Contribution 404.81 15.07 6.10 6.10 Total: -1.00 -28.74 404.81 -9.26 -38.00 By element: Atomic # 1 Polarization: 18.83 SS G_CDS: -8.46 Total: 10.38 kcal Atomic # 6 Polarization: 1.09 SS G_CDS: -1.46 Total: -0.37 kcal Atomic # 7 Polarization: -56.29 SS G_CDS: -0.50 Total: -56.80 kcal Atomic # 8 Polarization: -12.44 SS G_CDS: 0.09 Total: -12.36 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.03 Total: 15.05 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -28.74 -9.26 -38.00 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157307687.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.006 kcal (2) G-P(sol) polarization free energy of solvation -28.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.998 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds