Wall clock time and date at job start Tue Mar 31 2020 18:11:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46498 * 109.47345 * 2 1 4 4 C 1.46502 * 119.99697 * 269.99950 * 3 2 1 5 5 C 1.39046 * 119.99848 * 89.99844 * 3 2 1 6 6 C 1.39220 * 119.92805 * 180.02562 * 5 3 2 7 7 C 1.37604 * 120.07076 * 180.02562 * 6 5 3 8 8 C 1.39802 * 119.92834 * 359.97438 * 7 6 5 9 9 C 1.47528 * 120.06724 * 180.02562 * 8 7 6 10 10 O 1.21596 * 119.99976 * 0.02562 * 9 8 7 11 11 N 1.34769 * 119.99754 * 179.97438 * 9 8 7 12 12 C 1.46498 * 119.99991 * 179.97438 * 11 9 8 13 13 C 1.53002 * 109.47360 * 180.02562 * 12 11 9 14 14 H 1.09003 * 109.46831 * 65.00372 * 13 12 11 15 15 C 1.53004 * 109.47359 * 184.99931 * 13 12 11 16 16 N 1.46495 * 109.47333 * 305.00430 * 13 12 11 17 17 C 1.36940 * 120.00016 * 117.15258 * 16 13 12 18 18 H 1.07997 * 119.99801 * 214.08806 * 17 16 13 19 19 C 1.38803 * 119.99957 * 34.09285 * 17 16 13 20 20 N 1.31620 * 120.00387 * 17.01041 * 19 17 16 21 21 Si 1.86799 * 120.00186 * 197.01216 * 19 17 16 22 22 H 1.48499 * 109.47506 * 89.99722 * 21 19 17 23 23 H 1.48493 * 109.47505 * 210.00093 * 21 19 17 24 24 H 1.48508 * 109.47053 * 329.99922 * 21 19 17 25 25 C 1.46504 * 119.99748 * 297.15459 * 16 13 12 26 26 C 1.53000 * 109.46802 * 95.91415 * 25 16 13 27 27 C 1.39790 * 119.86159 * 0.27469 * 8 7 6 28 28 C 1.37611 * 119.92877 * 359.47161 * 27 8 7 29 29 H 1.09004 * 109.47568 * 300.00050 * 1 2 3 30 30 H 1.09002 * 109.47348 * 60.00089 * 1 2 3 31 31 H 1.09001 * 109.47385 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.47266 * 239.99509 * 2 1 3 33 33 H 1.09005 * 109.47028 * 120.00319 * 2 1 3 34 34 H 1.09005 * 109.46844 * 269.99468 * 4 3 2 35 35 H 1.08999 * 109.46946 * 30.00012 * 4 3 2 36 36 H 1.09003 * 109.46627 * 150.00058 * 4 3 2 37 37 H 1.08003 * 119.96613 * 0.02562 * 6 5 3 38 38 H 1.07997 * 120.03718 * 179.97438 * 7 6 5 39 39 H 0.97006 * 120.00044 * 0.02562 * 11 9 8 40 40 H 1.09005 * 109.46915 * 60.00392 * 12 11 9 41 41 H 1.09001 * 109.47100 * 300.00270 * 12 11 9 42 42 H 1.09000 * 109.47164 * 300.00725 * 15 13 12 43 43 H 1.09003 * 109.46789 * 60.00416 * 15 13 12 44 44 H 1.09001 * 109.47197 * 180.02562 * 15 13 12 45 45 H 0.97002 * 120.00617 * 180.02562 * 20 19 17 46 46 H 1.08999 * 109.46947 * 215.90715 * 25 16 13 47 47 H 1.08997 * 109.46999 * 335.91258 * 25 16 13 48 48 H 1.09002 * 109.46903 * 180.02562 * 26 25 16 49 49 H 1.09003 * 109.47191 * 299.99647 * 26 25 16 50 50 H 1.08997 * 109.47471 * 60.00132 * 26 25 16 51 51 H 1.08003 * 120.03365 * 179.72376 * 27 8 7 52 52 H 1.08000 * 119.96199 * 180.25236 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0717 -1.2688 5 6 2.2501 2.0366 1.2042 6 6 2.7137 3.3494 1.2025 7 6 2.9445 4.0006 2.3925 8 6 2.7124 3.3428 3.6040 9 6 2.9583 4.0383 4.8816 10 8 3.3628 5.1850 4.8816 11 7 2.7336 3.4030 6.0488 12 6 2.9783 4.0934 7.3175 13 6 2.6473 3.1559 8.4805 14 1 3.3368 2.3117 8.4740 15 6 2.7830 3.9150 9.8020 16 7 1.2741 2.6662 8.3373 17 6 1.0390 1.3283 8.1635 18 1 0.2167 1.0005 7.5448 19 6 1.8573 0.3937 8.7827 20 7 2.6318 0.7570 9.7830 21 14 1.8596 -1.3799 8.1963 22 1 2.8865 -1.5499 7.1372 23 1 2.1715 -2.2780 9.3369 24 1 0.5223 -1.7218 7.6485 25 6 0.1525 3.6076 8.3800 26 6 -0.2452 3.9920 6.9535 27 6 2.2519 2.0230 3.6024 28 6 2.0180 1.3789 2.4090 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.2920 1.9004 -1.5834 35 1 1.5817 1.6876 -2.0284 36 1 2.0956 3.1410 -1.1384 37 1 2.8924 3.8571 0.2662 38 1 3.3045 5.0188 2.3905 39 1 2.4106 2.4883 6.0488 40 1 2.3484 4.9812 7.3754 41 1 4.0264 4.3872 7.3750 42 1 3.8047 4.2794 9.9085 43 1 2.0936 4.7593 9.8084 44 1 2.5476 3.2470 10.6305 45 1 3.2040 0.1039 10.2154 46 1 -0.6956 3.1399 8.8801 47 1 0.4494 4.5019 8.9280 48 1 -1.0795 4.6929 6.9853 49 1 0.6029 4.4598 6.4534 50 1 -0.5422 3.0978 6.4056 51 1 2.0759 1.5106 4.5367 52 1 1.6583 0.3606 2.4071 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157307687.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:57 Heat of formation + Delta-G solvation = 2.186190 kcal Electronic energy + Delta-G solvation = -29906.517802 eV Core-core repulsion = 26099.136535 eV Total energy + Delta-G solvation = -3807.381266 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.19715 -40.06377 -38.56350 -37.22898 -35.23265 -33.73973 -33.05532 -32.47983 -31.73060 -30.61435 -29.89403 -27.56362 -26.68697 -25.77299 -24.56209 -23.34666 -23.17049 -22.19960 -21.01875 -20.76765 -19.20123 -18.57514 -17.74420 -17.29840 -16.73347 -16.41405 -16.36200 -15.92880 -15.73534 -15.54806 -15.40120 -14.96530 -14.70763 -14.49107 -14.28845 -14.14844 -13.98012 -13.83566 -13.49459 -13.37833 -13.35892 -13.28734 -13.11720 -12.89976 -12.78210 -12.72725 -12.68286 -12.54631 -12.36859 -12.03004 -12.01204 -11.84235 -11.62104 -11.35012 -11.15776 -10.84323 -10.82849 -10.41415 -9.97026 -9.86763 -8.50065 -8.26272 -7.79753 -5.31517 0.11641 0.49541 1.50503 1.54135 1.60211 2.02561 2.14785 2.47525 2.56588 3.02434 3.34039 3.67524 3.80462 3.91751 4.01758 4.10112 4.26610 4.30097 4.35569 4.41484 4.47001 4.50547 4.56224 4.59866 4.66464 4.70660 4.73267 4.81719 4.88974 4.90836 4.92573 4.93723 4.95731 4.99488 5.07233 5.11023 5.23004 5.23797 5.33342 5.33697 5.39047 5.53128 5.56398 5.62700 5.72596 5.76955 5.79705 5.87216 6.30676 6.46436 6.52681 6.79295 7.25748 7.39192 7.94280 8.47881 9.23769 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.011365 B = 0.003733 C = 0.003119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2463.010713 B = 7499.471089 C = 8975.653366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.109 3.891 3 N -0.625 5.625 4 C 0.083 3.917 5 C 0.243 3.757 6 C -0.209 4.209 7 C -0.018 4.018 8 C -0.218 4.218 9 C 0.553 3.447 10 O -0.600 6.600 11 N -0.698 5.698 12 C 0.115 3.885 13 C 0.180 3.820 14 H 0.072 0.928 15 C -0.135 4.135 16 N -0.590 5.590 17 C -0.261 4.261 18 H 0.061 0.939 19 C -0.030 4.030 20 N -0.914 5.914 21 Si 0.949 3.051 22 H -0.283 1.283 23 H -0.302 1.302 24 H -0.271 1.271 25 C 0.139 3.861 26 C -0.154 4.154 27 C -0.036 4.036 28 C -0.211 4.211 29 H 0.041 0.959 30 H 0.060 0.940 31 H 0.078 0.922 32 H 0.097 0.903 33 H 0.075 0.925 34 H 0.059 0.941 35 H 0.086 0.914 36 H 0.073 0.927 37 H 0.152 0.848 38 H 0.127 0.873 39 H 0.408 0.592 40 H 0.050 0.950 41 H 0.050 0.950 42 H 0.050 0.950 43 H 0.044 0.956 44 H 0.047 0.953 45 H 0.248 0.752 46 H 0.032 0.968 47 H 0.045 0.955 48 H 0.055 0.945 49 H 0.041 0.959 50 H 0.039 0.961 51 H 0.121 0.879 52 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.931 -0.235 -21.349 21.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.013 4.013 3 N -0.333 5.333 4 C -0.059 4.059 5 C 0.137 3.863 6 C -0.231 4.231 7 C -0.038 4.038 8 C -0.223 4.223 9 C 0.343 3.657 10 O -0.484 6.484 11 N -0.348 5.348 12 C -0.011 4.011 13 C 0.073 3.927 14 H 0.090 0.910 15 C -0.194 4.194 16 N -0.312 5.312 17 C -0.392 4.392 18 H 0.078 0.922 19 C -0.227 4.227 20 N -0.558 5.558 21 Si 0.778 3.222 22 H -0.209 1.209 23 H -0.229 1.229 24 H -0.196 1.196 25 C 0.014 3.986 26 C -0.213 4.213 27 C -0.056 4.056 28 C -0.233 4.233 29 H 0.060 0.940 30 H 0.079 0.921 31 H 0.097 0.903 32 H 0.115 0.885 33 H 0.093 0.907 34 H 0.077 0.923 35 H 0.104 0.896 36 H 0.092 0.908 37 H 0.169 0.831 38 H 0.145 0.855 39 H 0.245 0.755 40 H 0.068 0.932 41 H 0.068 0.932 42 H 0.069 0.931 43 H 0.063 0.937 44 H 0.066 0.934 45 H 0.058 0.942 46 H 0.051 0.949 47 H 0.063 0.937 48 H 0.074 0.926 49 H 0.060 0.940 50 H 0.058 0.942 51 H 0.139 0.861 52 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -1.609 0.332 -21.408 21.471 hybrid contribution -0.042 -1.292 0.503 1.387 sum -1.651 -0.960 -20.905 20.992 Atomic orbital electron populations 1.22184 0.95866 1.02813 1.01876 1.21642 0.94403 0.81392 1.03877 1.46717 1.69487 1.13921 1.03144 1.21886 1.01756 0.98128 0.84129 1.18088 0.90392 0.91257 0.86522 1.20782 1.09598 0.94171 0.98594 1.21006 0.92946 0.99174 0.90632 1.19636 1.13415 0.96370 0.92898 1.18619 0.76782 0.85597 0.84720 1.90657 1.49875 1.19330 1.88512 1.45843 1.65813 1.18076 1.05017 1.21921 0.98891 0.95940 0.84366 1.20376 0.87504 0.94510 0.90332 0.90983 1.21865 0.99812 0.98921 0.98780 1.43979 0.99992 1.02716 1.84537 1.19237 1.14468 0.82487 1.22983 0.92183 1.25716 1.00790 1.00562 0.95656 1.70134 1.29159 1.34414 1.22099 0.85560 0.78093 0.81455 0.77084 1.20948 1.22912 1.19610 1.20835 0.90397 0.92761 0.94619 1.22233 1.00082 0.99937 0.99060 1.21148 0.93138 0.92711 0.98569 1.20735 1.10410 1.01704 0.90488 0.93968 0.92093 0.90345 0.88455 0.90704 0.92286 0.89580 0.90803 0.83078 0.85466 0.75456 0.93179 0.93153 0.93059 0.93668 0.93400 0.94241 0.94922 0.93668 0.92598 0.94003 0.94230 0.86130 0.84172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.10 10.24 71.98 0.74 -1.36 16 2 C 0.11 1.37 5.86 86.38 0.51 1.88 16 3 N -0.62 -9.93 2.99 -722.20 -2.16 -12.09 16 4 C 0.08 0.85 10.18 127.77 1.30 2.15 16 5 C 0.24 5.40 6.55 38.47 0.25 5.66 16 6 C -0.21 -4.78 9.18 22.36 0.21 -4.58 16 7 C -0.02 -0.52 9.58 22.50 0.22 -0.30 16 8 C -0.22 -7.33 5.88 -20.07 -0.12 -7.45 16 9 C 0.55 21.97 7.71 86.69 0.67 22.63 16 10 O -0.60 -26.95 16.34 -4.02 -0.07 -27.01 16 11 N -0.70 -27.75 4.23 -466.27 -1.97 -29.73 16 12 C 0.11 4.69 4.36 86.38 0.38 5.07 16 13 C 0.18 7.97 1.95 44.99 0.09 8.06 16 14 H 0.07 3.66 5.94 -2.39 -0.01 3.65 16 15 C -0.13 -5.58 9.05 71.98 0.65 -4.93 16 16 N -0.59 -26.99 1.88 -678.04 -1.28 -28.27 16 17 C -0.26 -13.03 9.07 84.03 0.76 -12.27 16 18 H 0.06 3.00 7.89 -2.91 -0.02 2.97 16 19 C -0.03 -1.51 4.86 84.86 0.41 -1.10 16 20 N -0.91 -49.56 10.90 21.65 0.24 -49.32 16 21 Si 0.95 41.71 29.59 68.60 2.03 43.74 16 22 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 23 H -0.30 -13.75 7.11 99.48 0.71 -13.04 16 24 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 25 C 0.14 5.69 5.75 86.38 0.50 6.18 16 26 C -0.15 -5.64 9.95 71.98 0.72 -4.93 16 27 C -0.04 -1.09 9.53 22.50 0.21 -0.88 16 28 C -0.21 -5.31 9.18 22.35 0.21 -5.10 16 29 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.10 0.80 8.07 -2.38 -0.02 0.79 16 33 H 0.07 1.04 6.17 -2.38 -0.01 1.02 16 34 H 0.06 0.53 8.14 -2.38 -0.02 0.51 16 35 H 0.09 0.56 8.07 -2.39 -0.02 0.54 16 36 H 0.07 0.73 6.17 -2.39 -0.01 0.72 16 37 H 0.15 2.55 6.11 -2.91 -0.02 2.54 16 38 H 0.13 3.73 7.64 -2.91 -0.02 3.70 16 39 H 0.41 16.48 5.75 -92.70 -0.53 15.94 16 40 H 0.05 2.07 6.98 -2.38 -0.02 2.06 16 41 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 42 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 43 H 0.04 1.72 6.56 -2.39 -0.02 1.70 16 44 H 0.05 2.24 7.69 -2.39 -0.02 2.22 16 45 H 0.25 13.31 8.31 -92.71 -0.77 12.54 16 46 H 0.03 1.37 8.09 -2.39 -0.02 1.35 16 47 H 0.04 1.76 6.29 -2.39 -0.02 1.74 16 48 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 49 H 0.04 1.62 5.32 -2.39 -0.01 1.61 16 50 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 51 H 0.12 3.83 6.39 -2.91 -0.02 3.81 16 52 H 0.14 3.03 6.11 -2.91 -0.02 3.01 16 Total: -1.00 -62.45 404.81 4.87 -57.59 By element: Atomic # 1 Polarization: 35.98 SS G_CDS: 0.38 Total: 36.37 kcal Atomic # 6 Polarization: 1.03 SS G_CDS: 7.69 Total: 8.72 kcal Atomic # 7 Polarization: -114.24 SS G_CDS: -5.17 Total: -119.41 kcal Atomic # 8 Polarization: -26.95 SS G_CDS: -0.07 Total: -27.01 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 2.03 Total: 43.74 kcal Total: -62.45 4.87 -57.59 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157307687.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.772 kcal (2) G-P(sol) polarization free energy of solvation -62.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.585 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds