Wall clock time and date at job start Tue Mar 31 2020 17:58:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46504 * 109.46843 * 2 1 4 4 C 1.36447 * 124.85045 * 265.02661 * 3 2 1 5 5 C 1.34484 * 108.85614 * 180.02562 * 4 3 2 6 6 C 1.46694 * 106.33344 * 359.97438 * 5 4 3 7 7 C 1.47259 * 126.94415 * 179.97438 * 6 5 4 8 8 O 1.21623 * 119.99952 * 150.32903 * 7 6 5 9 9 N 1.34773 * 120.00262 * 330.33308 * 7 6 5 10 10 C 1.46925 * 120.62764 * 3.94146 * 9 7 6 11 11 C 1.52759 * 109.00760 * 233.58056 * 10 9 7 12 12 C 1.53036 * 109.38616 * 305.58750 * 11 10 9 13 13 C 1.53043 * 109.53407 * 61.23985 * 12 11 10 14 14 C 1.46925 * 120.63616 * 184.22020 * 9 7 6 15 15 H 1.09006 * 109.58887 * 246.30635 * 14 9 7 16 16 C 1.53003 * 109.57954 * 6.58050 * 14 9 7 17 17 N 1.46505 * 109.46639 * 177.38754 * 16 14 9 18 18 C 1.46501 * 120.00053 * 84.04012 * 17 16 14 19 19 C 1.36939 * 119.99869 * 264.02955 * 17 16 14 20 20 H 1.08002 * 119.99793 * 3.01098 * 19 17 16 21 21 C 1.38812 * 119.99855 * 182.99917 * 19 17 16 22 22 N 1.31624 * 120.00311 * 5.50965 * 21 19 17 23 23 Si 1.86805 * 119.99925 * 185.50814 * 21 19 17 24 24 H 1.48496 * 109.47146 * 90.00365 * 23 21 19 25 25 H 1.48496 * 109.46909 * 210.00561 * 23 21 19 26 26 H 1.48505 * 109.46741 * 330.00302 * 23 21 19 27 27 C 1.34657 * 124.84898 * 84.72305 * 3 2 1 28 28 C 1.50699 * 125.80037 * 359.97438 * 27 3 2 29 29 H 1.08997 * 109.47005 * 60.00146 * 1 2 3 30 30 H 1.08998 * 109.46740 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47218 * 299.99465 * 1 2 3 32 32 H 1.09001 * 109.46791 * 240.00240 * 2 1 3 33 33 H 1.08997 * 109.47005 * 119.99854 * 2 1 3 34 34 H 1.08002 * 125.57226 * 359.97438 * 4 3 2 35 35 H 1.07999 * 126.83665 * 180.02562 * 5 4 3 36 36 H 1.08995 * 109.59069 * 353.41692 * 10 9 7 37 37 H 1.09005 * 109.59050 * 113.84290 * 10 9 7 38 38 H 1.09000 * 109.56652 * 185.55201 * 11 10 9 39 39 H 1.09000 * 109.36267 * 65.50320 * 11 10 9 40 40 H 1.09001 * 109.46600 * 301.22183 * 12 11 10 41 41 H 1.09005 * 109.45414 * 181.25007 * 12 11 10 42 42 H 1.09010 * 109.49679 * 178.68204 * 13 12 11 43 43 H 1.08998 * 109.52526 * 58.60266 * 13 12 11 44 44 H 1.09001 * 109.47602 * 297.38239 * 16 14 9 45 45 H 1.08997 * 109.47150 * 57.38900 * 16 14 9 46 46 H 1.08997 * 109.46941 * 359.62798 * 18 17 16 47 47 H 1.08995 * 109.47666 * 119.63276 * 18 17 16 48 48 H 1.09011 * 109.46674 * 239.63371 * 18 17 16 49 49 H 0.96991 * 120.00003 * 179.97438 * 22 21 19 50 50 H 1.09008 * 109.46669 * 95.37186 * 28 27 3 51 51 H 1.08995 * 109.47271 * 215.36500 * 28 27 3 52 52 H 1.08996 * 109.47528 * 335.37347 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3697 2.0841 -1.1155 5 6 2.7708 3.3134 -0.7463 6 6 2.6536 3.3641 0.7150 7 6 2.9767 4.5037 1.5899 8 8 2.3780 4.6548 2.6378 9 7 3.9357 5.3793 1.2295 10 6 4.6076 5.2600 -0.0717 11 6 6.1185 5.2222 0.1501 12 6 6.5427 6.4447 0.9670 13 6 5.8514 6.4130 2.3321 14 6 4.3336 6.4677 2.1327 15 1 4.0547 7.4263 1.6950 16 6 3.6325 6.2966 3.4818 17 7 4.0786 7.3470 4.4006 18 6 3.4398 8.6651 4.3718 19 6 5.0924 7.0967 5.2864 20 1 5.5959 6.1412 5.2748 21 6 5.4732 8.0710 6.1989 22 7 4.7908 9.1931 6.2867 23 14 6.9540 7.7896 7.3023 24 1 8.1767 8.2956 6.6285 25 1 6.7602 8.5128 8.5847 26 1 7.1021 6.3365 7.5709 27 6 2.1789 2.1406 1.1004 28 6 1.8887 1.7136 2.5162 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.3326 1.7133 -2.1293 35 1 3.1108 4.1061 -1.3964 36 1 4.2889 4.3416 -0.5646 37 1 4.3538 6.1181 -0.6941 38 1 6.6292 5.2331 -0.8128 39 1 6.3817 4.3136 0.6916 40 1 6.2572 7.3531 0.4365 41 1 7.6237 6.4305 1.1070 42 1 6.1721 7.2715 2.9223 43 1 6.1170 5.4934 2.8536 44 1 2.5539 6.3696 3.3427 45 1 3.8799 5.3203 3.8986 46 1 2.6659 8.6770 3.6044 47 1 2.9914 8.8729 5.3432 48 1 4.1870 9.4261 4.1461 49 1 5.0567 9.8737 6.9245 50 1 2.8068 1.3573 2.9836 51 1 1.5001 2.5621 3.0792 52 1 1.1497 0.9125 2.5098 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158364439.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:15 Heat of formation + Delta-G solvation = 67.867844 kcal Electronic energy + Delta-G solvation = -30559.108600 eV Core-core repulsion = 26754.575504 eV Total energy + Delta-G solvation = -3804.533096 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.55150 -39.65536 -36.83494 -35.41886 -34.35791 -32.39742 -31.91868 -31.58161 -30.03659 -29.22222 -26.87694 -25.87869 -25.68195 -24.27165 -24.05973 -22.29029 -21.74550 -20.60320 -20.09972 -19.23668 -18.13875 -16.98489 -16.61426 -15.85249 -15.52939 -15.40974 -14.89093 -14.56035 -14.46311 -14.17376 -13.80937 -13.71214 -13.45215 -13.14299 -13.07860 -12.97354 -12.88384 -12.68594 -12.53550 -12.36675 -12.27437 -11.99830 -11.89592 -11.68692 -11.51649 -11.35798 -10.89816 -10.86349 -10.63958 -10.50669 -10.35326 -10.22501 -9.99424 -9.90280 -9.69657 -9.55573 -8.71787 -8.51557 -8.32687 -8.17056 -7.90495 -6.65161 -5.42633 -2.85234 1.93442 2.38851 2.66382 3.47938 3.51739 3.55237 3.56772 3.80133 4.29463 4.57377 4.63774 4.67228 4.80896 4.83391 5.06078 5.11927 5.17604 5.18839 5.21566 5.26162 5.44032 5.51351 5.60054 5.62100 5.64813 5.67527 5.75357 5.79826 5.85372 5.95650 5.99521 6.11068 6.13821 6.17695 6.23983 6.34506 6.39691 6.65820 6.72806 6.76729 6.91510 7.00887 7.04418 7.15424 7.18640 7.22186 7.51791 7.82107 7.92058 8.03233 8.14950 8.58971 8.83775 9.48476 10.14521 10.57825 11.55197 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.016262 B = 0.003284 C = 0.003021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.440253 B = 8523.850552 C = 9267.633616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.097 3.903 3 N -0.444 5.444 4 C -0.020 4.020 5 C -0.179 4.179 6 C -0.223 4.223 7 C 0.586 3.414 8 O -0.535 6.535 9 N -0.597 5.597 10 C 0.081 3.919 11 C -0.132 4.132 12 C -0.122 4.122 13 C -0.116 4.116 14 C 0.124 3.876 15 H 0.058 0.942 16 C 0.167 3.833 17 N -0.613 5.613 18 C 0.168 3.832 19 C -0.229 4.229 20 H 0.071 0.929 21 C -0.012 4.012 22 N -0.921 5.921 23 Si 0.902 3.098 24 H -0.291 1.291 25 H -0.293 1.293 26 H -0.283 1.283 27 C 0.098 3.902 28 C -0.097 4.097 29 H 0.063 0.937 30 H 0.073 0.927 31 H 0.065 0.935 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.163 0.837 35 H 0.154 0.846 36 H 0.111 0.889 37 H 0.058 0.942 38 H 0.064 0.936 39 H 0.062 0.938 40 H 0.057 0.943 41 H 0.056 0.944 42 H 0.092 0.908 43 H 0.056 0.944 44 H 0.064 0.936 45 H 0.053 0.947 46 H -0.011 1.011 47 H 0.054 0.946 48 H 0.026 0.974 49 H 0.246 0.754 50 H 0.074 0.926 51 H 0.103 0.897 52 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.705 -18.013 -19.091 26.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.025 4.025 3 N -0.121 5.121 4 C -0.146 4.146 5 C -0.203 4.203 6 C -0.233 4.233 7 C 0.375 3.625 8 O -0.413 6.413 9 N -0.330 5.330 10 C -0.042 4.042 11 C -0.170 4.170 12 C -0.159 4.159 13 C -0.154 4.154 14 C 0.019 3.981 15 H 0.076 0.924 16 C 0.039 3.961 17 N -0.337 5.337 18 C 0.024 3.976 19 C -0.358 4.358 20 H 0.089 0.911 21 C -0.207 4.207 22 N -0.570 5.570 23 Si 0.734 3.266 24 H -0.219 1.219 25 H -0.219 1.219 26 H -0.209 1.209 27 C -0.018 4.018 28 C -0.154 4.154 29 H 0.082 0.918 30 H 0.092 0.908 31 H 0.085 0.915 32 H 0.109 0.891 33 H 0.107 0.893 34 H 0.180 0.820 35 H 0.171 0.829 36 H 0.128 0.872 37 H 0.077 0.923 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.111 0.889 43 H 0.075 0.925 44 H 0.082 0.918 45 H 0.072 0.928 46 H 0.007 0.993 47 H 0.073 0.927 48 H 0.045 0.955 49 H 0.057 0.943 50 H 0.092 0.908 51 H 0.122 0.878 52 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -5.119 -18.118 -18.410 26.332 hybrid contribution 1.139 0.000 0.242 1.164 sum -3.980 -18.118 -18.169 25.966 Atomic orbital electron populations 1.22193 0.94297 1.02951 1.03505 1.21850 0.95627 0.80661 1.04325 1.43695 1.50785 1.11704 1.05895 1.21658 1.08305 0.93496 0.91119 1.22192 1.07203 0.97226 0.93649 1.20295 1.14217 0.95206 0.93540 1.17403 0.79310 0.80987 0.84792 1.90820 1.51769 1.74187 1.24518 1.48114 1.37122 1.29844 1.17953 1.22348 0.92623 1.03433 0.85771 1.21821 0.95809 0.99357 1.00028 1.21586 0.99863 0.97305 0.97190 1.21834 0.94380 1.03695 0.95498 1.22433 0.95422 0.87596 0.92644 0.92408 1.21381 0.96620 0.91620 0.86449 1.44358 1.40713 1.09795 1.38798 1.21018 0.93434 0.85602 0.97541 1.19339 1.08390 0.98903 1.09189 0.91089 1.24819 0.99448 0.96931 0.99502 1.70211 1.40006 1.08107 1.38721 0.86251 0.82970 0.77199 0.80214 1.21870 1.21947 1.20857 1.20220 1.01445 0.90825 0.89306 1.20572 1.01968 1.03164 0.89738 0.91787 0.90773 0.91546 0.89108 0.89296 0.81961 0.82882 0.87190 0.92344 0.91738 0.91949 0.92452 0.92476 0.88914 0.92532 0.91757 0.92816 0.99290 0.92733 0.95547 0.94279 0.90759 0.87827 0.92054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.94 10.24 37.16 0.38 -0.56 16 2 C 0.10 0.58 6.17 -4.04 -0.02 0.55 16 3 N -0.44 -4.28 2.69 -112.52 -0.30 -4.58 16 4 C -0.02 -0.18 11.33 -16.83 -0.19 -0.37 16 5 C -0.18 -2.02 8.75 -37.50 -0.33 -2.35 16 6 C -0.22 -3.25 5.83 -103.35 -0.60 -3.86 16 7 C 0.59 10.51 7.42 -12.60 -0.09 10.42 16 8 O -0.53 -11.27 10.84 5.26 0.06 -11.21 16 9 N -0.60 -10.18 2.98 -166.81 -0.50 -10.68 16 10 C 0.08 1.06 5.64 -3.93 -0.02 1.04 16 11 C -0.13 -1.68 6.06 -26.84 -0.16 -1.84 16 12 C -0.12 -1.83 5.89 -26.69 -0.16 -1.98 16 13 C -0.12 -2.22 4.60 -26.61 -0.12 -2.35 16 14 C 0.12 2.47 3.22 -67.60 -0.22 2.25 16 15 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 16 C 0.17 3.94 3.56 -4.04 -0.01 3.93 16 17 N -0.61 -16.48 2.57 -181.11 -0.46 -16.95 16 18 C 0.17 4.54 9.00 59.85 0.54 5.08 16 19 C -0.23 -6.53 8.28 -15.06 -0.12 -6.65 16 20 H 0.07 2.00 7.81 -52.49 -0.41 1.59 16 21 C -0.01 -0.35 5.43 -17.43 -0.09 -0.44 16 22 N -0.92 -27.88 9.49 55.49 0.53 -27.35 16 23 Si 0.90 22.86 29.56 -169.99 -5.02 17.83 16 24 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 25 H -0.29 -7.51 7.11 56.52 0.40 -7.10 16 26 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 27 C 0.10 1.24 6.88 -81.88 -0.56 0.68 16 28 C -0.10 -1.14 9.60 36.01 0.35 -0.80 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 31 H 0.07 0.46 7.58 -51.93 -0.39 0.06 16 32 H 0.09 0.36 8.11 -51.93 -0.42 -0.06 16 33 H 0.09 0.47 7.65 -51.93 -0.40 0.07 16 34 H 0.16 0.96 8.06 -52.49 -0.42 0.54 16 35 H 0.15 1.47 6.15 -52.49 -0.32 1.15 16 36 H 0.11 1.26 3.14 -51.93 -0.16 1.09 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.09 2.08 7.00 -51.92 -0.36 1.71 16 43 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 44 H 0.06 1.60 6.24 -51.93 -0.32 1.28 16 45 H 0.05 1.35 6.97 -51.93 -0.36 0.99 16 46 H -0.01 -0.28 7.88 -51.93 -0.41 -0.69 16 47 H 0.05 1.60 6.69 -51.93 -0.35 1.25 16 48 H 0.03 0.74 7.39 -51.92 -0.38 0.36 16 49 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 50 H 0.07 0.85 8.14 -51.92 -0.42 0.42 16 51 H 0.10 1.49 6.64 -51.93 -0.35 1.15 16 52 H 0.06 0.54 6.89 -51.93 -0.36 0.19 16 LS Contribution 391.27 15.07 5.90 5.90 Total: -1.00 -33.81 391.27 -10.05 -43.86 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -8.79 Total: 0.44 kcal Atomic # 6 Polarization: 4.20 SS G_CDS: -1.45 Total: 2.74 kcal Atomic # 7 Polarization: -58.83 SS G_CDS: -0.74 Total: -59.56 kcal Atomic # 8 Polarization: -11.27 SS G_CDS: 0.06 Total: -11.21 kcal Atomic # 14 Polarization: 22.86 SS G_CDS: -5.02 Total: 17.83 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.81 -10.05 -43.86 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158364439.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.729 kcal (2) G-P(sol) polarization free energy of solvation -33.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.861 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds