Wall clock time and date at job start Tue Mar 31 2020 17:58:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46504 * 109.46843 * 2 1 4 4 C 1.36447 * 124.85045 * 265.02661 * 3 2 1 5 5 C 1.34484 * 108.85614 * 180.02562 * 4 3 2 6 6 C 1.46694 * 106.33344 * 359.97438 * 5 4 3 7 7 C 1.47259 * 126.94415 * 179.97438 * 6 5 4 8 8 O 1.21623 * 119.99952 * 150.32903 * 7 6 5 9 9 N 1.34773 * 120.00262 * 330.33308 * 7 6 5 10 10 C 1.46925 * 120.62764 * 3.94146 * 9 7 6 11 11 C 1.52759 * 109.00760 * 233.58056 * 10 9 7 12 12 C 1.53036 * 109.38616 * 305.58750 * 11 10 9 13 13 C 1.53043 * 109.53407 * 61.23985 * 12 11 10 14 14 C 1.46925 * 120.63616 * 184.22020 * 9 7 6 15 15 H 1.09006 * 109.58887 * 246.30635 * 14 9 7 16 16 C 1.53003 * 109.57954 * 6.58050 * 14 9 7 17 17 N 1.46505 * 109.46639 * 177.38754 * 16 14 9 18 18 C 1.46501 * 120.00053 * 84.04012 * 17 16 14 19 19 C 1.36939 * 119.99869 * 264.02955 * 17 16 14 20 20 H 1.08002 * 119.99793 * 3.01098 * 19 17 16 21 21 C 1.38812 * 119.99855 * 182.99917 * 19 17 16 22 22 N 1.31624 * 120.00311 * 5.50965 * 21 19 17 23 23 Si 1.86805 * 119.99925 * 185.50814 * 21 19 17 24 24 H 1.48496 * 109.47146 * 90.00365 * 23 21 19 25 25 H 1.48496 * 109.46909 * 210.00561 * 23 21 19 26 26 H 1.48505 * 109.46741 * 330.00302 * 23 21 19 27 27 C 1.34657 * 124.84898 * 84.72305 * 3 2 1 28 28 C 1.50699 * 125.80037 * 359.97438 * 27 3 2 29 29 H 1.08997 * 109.47005 * 60.00146 * 1 2 3 30 30 H 1.08998 * 109.46740 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47218 * 299.99465 * 1 2 3 32 32 H 1.09001 * 109.46791 * 240.00240 * 2 1 3 33 33 H 1.08997 * 109.47005 * 119.99854 * 2 1 3 34 34 H 1.08002 * 125.57226 * 359.97438 * 4 3 2 35 35 H 1.07999 * 126.83665 * 180.02562 * 5 4 3 36 36 H 1.08995 * 109.59069 * 353.41692 * 10 9 7 37 37 H 1.09005 * 109.59050 * 113.84290 * 10 9 7 38 38 H 1.09000 * 109.56652 * 185.55201 * 11 10 9 39 39 H 1.09000 * 109.36267 * 65.50320 * 11 10 9 40 40 H 1.09001 * 109.46600 * 301.22183 * 12 11 10 41 41 H 1.09005 * 109.45414 * 181.25007 * 12 11 10 42 42 H 1.09010 * 109.49679 * 178.68204 * 13 12 11 43 43 H 1.08998 * 109.52526 * 58.60266 * 13 12 11 44 44 H 1.09001 * 109.47602 * 297.38239 * 16 14 9 45 45 H 1.08997 * 109.47150 * 57.38900 * 16 14 9 46 46 H 1.08997 * 109.46941 * 359.62798 * 18 17 16 47 47 H 1.08995 * 109.47666 * 119.63276 * 18 17 16 48 48 H 1.09011 * 109.46674 * 239.63371 * 18 17 16 49 49 H 0.96991 * 120.00003 * 179.97438 * 22 21 19 50 50 H 1.09008 * 109.46669 * 95.37186 * 28 27 3 51 51 H 1.08995 * 109.47271 * 215.36500 * 28 27 3 52 52 H 1.08996 * 109.47528 * 335.37347 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3697 2.0841 -1.1155 5 6 2.7708 3.3134 -0.7463 6 6 2.6536 3.3641 0.7150 7 6 2.9767 4.5037 1.5899 8 8 2.3780 4.6548 2.6378 9 7 3.9357 5.3793 1.2295 10 6 4.6076 5.2600 -0.0717 11 6 6.1185 5.2222 0.1501 12 6 6.5427 6.4447 0.9670 13 6 5.8514 6.4130 2.3321 14 6 4.3336 6.4677 2.1327 15 1 4.0547 7.4263 1.6950 16 6 3.6325 6.2966 3.4818 17 7 4.0786 7.3470 4.4006 18 6 3.4398 8.6651 4.3718 19 6 5.0924 7.0967 5.2864 20 1 5.5959 6.1412 5.2748 21 6 5.4732 8.0710 6.1989 22 7 4.7908 9.1931 6.2867 23 14 6.9540 7.7896 7.3023 24 1 8.1767 8.2956 6.6285 25 1 6.7602 8.5128 8.5847 26 1 7.1021 6.3365 7.5709 27 6 2.1789 2.1406 1.1004 28 6 1.8887 1.7136 2.5162 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.3326 1.7133 -2.1293 35 1 3.1108 4.1061 -1.3964 36 1 4.2889 4.3416 -0.5646 37 1 4.3538 6.1181 -0.6941 38 1 6.6292 5.2331 -0.8128 39 1 6.3817 4.3136 0.6916 40 1 6.2572 7.3531 0.4365 41 1 7.6237 6.4305 1.1070 42 1 6.1721 7.2715 2.9223 43 1 6.1170 5.4934 2.8536 44 1 2.5539 6.3696 3.3427 45 1 3.8799 5.3203 3.8986 46 1 2.6659 8.6770 3.6044 47 1 2.9914 8.8729 5.3432 48 1 4.1870 9.4261 4.1461 49 1 5.0567 9.8737 6.9245 50 1 2.8068 1.3573 2.9836 51 1 1.5001 2.5621 3.0792 52 1 1.1497 0.9125 2.5098 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158364439.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:14 Heat of formation + Delta-G solvation = 48.944518 kcal Electronic energy + Delta-G solvation = -30559.929177 eV Core-core repulsion = 26754.575504 eV Total energy + Delta-G solvation = -3805.353673 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.43860 -41.00429 -38.27209 -37.34673 -35.14203 -33.72349 -33.65776 -32.52004 -31.76533 -30.07418 -28.23013 -28.00825 -27.10243 -25.62309 -24.89293 -23.80465 -22.77263 -22.20791 -21.37854 -20.43528 -19.18075 -18.76428 -17.90253 -17.18136 -16.91935 -16.53257 -16.37538 -15.80288 -15.59706 -15.40838 -15.17853 -15.07287 -14.75934 -14.58823 -14.39940 -14.13371 -14.02966 -13.80383 -13.75401 -13.60259 -13.56345 -13.15213 -13.06550 -12.81003 -12.69263 -12.67183 -12.48530 -12.40506 -12.14684 -12.09524 -12.08458 -11.95586 -11.77504 -11.65634 -11.46102 -11.20861 -10.65555 -10.15659 -9.51228 -9.31433 -8.99616 -8.85160 -7.67927 -5.13664 0.89025 1.44519 1.46493 1.55224 1.57465 1.88976 2.25884 2.52305 2.58835 3.36718 3.77043 3.85089 3.86038 3.91432 4.00091 4.04077 4.10407 4.15710 4.18777 4.26587 4.39584 4.43044 4.45145 4.54270 4.60315 4.65745 4.66386 4.76528 4.82751 4.85158 4.88175 4.91353 5.00585 5.05688 5.11191 5.13272 5.18153 5.21793 5.27250 5.28569 5.33518 5.37985 5.53178 5.54468 5.62023 5.82564 5.85297 5.88431 6.19291 6.34225 6.46407 6.72416 7.21379 7.45604 7.95385 8.35286 9.29095 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.016262 B = 0.003284 C = 0.003021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.440253 B = 8523.850552 C = 9267.633616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.090 3.910 3 N -0.436 5.436 4 C 0.001 3.999 5 C -0.194 4.194 6 C -0.258 4.258 7 C 0.575 3.425 8 O -0.582 6.582 9 N -0.599 5.599 10 C 0.077 3.923 11 C -0.124 4.124 12 C -0.116 4.116 13 C -0.106 4.106 14 C 0.136 3.864 15 H 0.051 0.949 16 C 0.181 3.819 17 N -0.626 5.626 18 C 0.188 3.812 19 C -0.235 4.235 20 H 0.068 0.932 21 C -0.066 4.066 22 N -0.949 5.949 23 Si 0.970 3.030 24 H -0.284 1.284 25 H -0.294 1.294 26 H -0.274 1.274 27 C 0.087 3.913 28 C -0.093 4.093 29 H 0.061 0.939 30 H 0.096 0.904 31 H 0.045 0.955 32 H 0.122 0.878 33 H 0.095 0.905 34 H 0.207 0.793 35 H 0.171 0.829 36 H 0.134 0.866 37 H 0.074 0.926 38 H 0.105 0.895 39 H 0.053 0.947 40 H 0.065 0.935 41 H 0.068 0.932 42 H 0.055 0.945 43 H 0.038 0.962 44 H 0.048 0.952 45 H 0.031 0.969 46 H 0.009 0.991 47 H 0.026 0.974 48 H 0.008 0.992 49 H 0.243 0.757 50 H 0.072 0.928 51 H 0.068 0.932 52 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.775 -20.778 -22.696 31.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.030 4.030 3 N -0.112 5.112 4 C -0.125 4.125 5 C -0.217 4.217 6 C -0.268 4.268 7 C 0.367 3.633 8 O -0.464 6.464 9 N -0.331 5.331 10 C -0.044 4.044 11 C -0.162 4.162 12 C -0.154 4.154 13 C -0.145 4.145 14 C 0.030 3.970 15 H 0.069 0.931 16 C 0.055 3.945 17 N -0.351 5.351 18 C 0.043 3.957 19 C -0.365 4.365 20 H 0.086 0.914 21 C -0.258 4.258 22 N -0.600 5.600 23 Si 0.799 3.201 24 H -0.211 1.211 25 H -0.221 1.221 26 H -0.199 1.199 27 C -0.030 4.030 28 C -0.150 4.150 29 H 0.080 0.920 30 H 0.115 0.885 31 H 0.065 0.935 32 H 0.140 0.860 33 H 0.114 0.886 34 H 0.223 0.777 35 H 0.188 0.812 36 H 0.151 0.849 37 H 0.093 0.907 38 H 0.123 0.877 39 H 0.072 0.928 40 H 0.083 0.917 41 H 0.087 0.913 42 H 0.074 0.926 43 H 0.057 0.943 44 H 0.066 0.934 45 H 0.049 0.951 46 H 0.028 0.972 47 H 0.045 0.955 48 H 0.026 0.974 49 H 0.053 0.947 50 H 0.091 0.909 51 H 0.086 0.914 52 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -4.184 -20.935 -22.085 30.717 hybrid contribution 0.733 0.738 1.312 1.674 sum -3.451 -20.197 -20.774 29.178 Atomic orbital electron populations 1.22171 0.93955 1.04100 1.02375 1.22210 0.95841 0.78693 1.06284 1.43977 1.49461 1.12795 1.05008 1.22316 1.05323 0.92436 0.92454 1.22360 1.08583 0.98910 0.91811 1.20177 1.16874 0.94712 0.95076 1.18064 0.78734 0.81748 0.84753 1.90782 1.53450 1.75373 1.26790 1.48141 1.37316 1.28726 1.18958 1.22701 0.92601 1.05374 0.83751 1.21803 0.95636 0.97421 1.01341 1.21551 1.00046 0.99112 0.94671 1.21647 0.94069 1.00954 0.97813 1.21861 0.95517 0.88512 0.91081 0.93097 1.21189 0.95906 0.89469 0.87908 1.44562 1.40609 1.10245 1.39721 1.20671 0.93097 0.85358 0.96538 1.19526 1.08591 0.98872 1.09509 0.91375 1.25609 1.02289 0.96835 1.01107 1.70414 1.41391 1.08773 1.39386 0.85198 0.79558 0.77379 0.77983 1.21054 1.22095 1.19918 1.20238 1.01402 0.91092 0.90306 1.20462 1.02511 1.02566 0.89476 0.92036 0.88511 0.93537 0.85977 0.88624 0.77674 0.81211 0.84881 0.90740 0.87704 0.92815 0.91663 0.91307 0.92635 0.94332 0.93440 0.95103 0.97233 0.95524 0.97356 0.94719 0.90909 0.91350 0.89233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.34 10.24 71.98 0.74 -0.60 16 2 C 0.09 0.73 6.17 86.38 0.53 1.26 16 3 N -0.44 -7.09 2.69 -509.90 -1.37 -8.46 16 4 C 0.00 0.02 11.33 83.12 0.94 0.96 16 5 C -0.19 -3.81 8.75 23.62 0.21 -3.61 16 6 C -0.26 -7.42 5.83 -19.04 -0.11 -7.53 16 7 C 0.58 21.44 7.42 86.62 0.64 22.08 16 8 O -0.58 -26.45 10.84 -4.11 -0.04 -26.50 16 9 N -0.60 -20.66 2.98 -799.90 -2.38 -23.04 16 10 C 0.08 1.83 5.64 86.22 0.49 2.31 16 11 C -0.12 -2.79 6.06 30.53 0.19 -2.61 16 12 C -0.12 -3.32 5.89 30.62 0.18 -3.14 16 13 C -0.11 -4.21 4.60 30.67 0.14 -4.07 16 14 C 0.14 5.64 3.22 44.97 0.14 5.79 16 15 H 0.05 2.18 8.14 -2.38 -0.02 2.16 16 16 C 0.18 9.14 3.56 86.38 0.31 9.45 16 17 N -0.63 -35.59 2.57 -726.91 -1.87 -37.46 16 18 C 0.19 10.67 9.00 127.77 1.15 11.82 16 19 C -0.24 -14.02 8.28 84.03 0.70 -13.32 16 20 H 0.07 4.01 7.81 -2.91 -0.02 3.99 16 21 C -0.07 -3.97 5.43 84.86 0.46 -3.51 16 22 N -0.95 -59.57 9.49 21.65 0.21 -59.36 16 23 Si 0.97 48.20 29.56 68.60 2.03 50.23 16 24 H -0.28 -13.69 7.11 99.48 0.71 -12.98 16 25 H -0.29 -14.63 7.11 99.48 0.71 -13.92 16 26 H -0.27 -13.10 7.11 99.48 0.71 -12.39 16 27 C 0.09 2.15 6.88 41.78 0.29 2.43 16 28 C -0.09 -2.25 9.60 71.24 0.68 -1.56 16 29 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.10 0.35 8.14 -2.39 -0.02 0.33 16 31 H 0.05 0.56 7.58 -2.39 -0.02 0.55 16 32 H 0.12 0.30 8.11 -2.39 -0.02 0.29 16 33 H 0.10 0.69 7.65 -2.39 -0.02 0.67 16 34 H 0.21 1.11 8.06 -2.91 -0.02 1.09 16 35 H 0.17 2.62 6.15 -2.91 -0.02 2.61 16 36 H 0.13 2.63 3.14 -2.39 -0.01 2.62 16 37 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 38 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 41 H 0.07 1.82 8.14 -2.38 -0.02 1.80 16 42 H 0.05 2.60 7.00 -2.38 -0.02 2.58 16 43 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 44 H 0.05 2.55 6.24 -2.39 -0.01 2.53 16 45 H 0.03 1.67 6.97 -2.39 -0.02 1.65 16 46 H 0.01 0.47 7.88 -2.39 -0.02 0.45 16 47 H 0.03 1.64 6.69 -2.39 -0.02 1.62 16 48 H 0.01 0.48 7.39 -2.38 -0.02 0.46 16 49 H 0.24 14.79 8.31 -92.71 -0.77 14.02 16 50 H 0.07 1.73 8.14 -2.38 -0.02 1.71 16 51 H 0.07 2.16 6.64 -2.39 -0.02 2.14 16 52 H 0.09 1.55 6.89 -2.39 -0.02 1.54 16 Total: -1.00 -79.72 391.27 5.14 -74.58 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: 0.90 Total: 13.85 kcal Atomic # 6 Polarization: 8.49 SS G_CDS: 7.67 Total: 16.16 kcal Atomic # 7 Polarization: -122.90 SS G_CDS: -5.41 Total: -128.31 kcal Atomic # 8 Polarization: -26.45 SS G_CDS: -0.04 Total: -26.50 kcal Atomic # 14 Polarization: 48.20 SS G_CDS: 2.03 Total: 50.23 kcal Total: -79.72 5.14 -74.58 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158364439.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.522 kcal (2) G-P(sol) polarization free energy of solvation -79.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.577 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds