Wall clock time and date at job start Tue Mar 31 2020 17:27:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.47259 * 2 1 4 4 C 1.53006 * 109.46783 * 240.00191 * 2 1 3 5 5 C 1.50696 * 109.47392 * 66.01697 * 4 2 1 6 6 O 1.21281 * 120.00018 * 6.27128 * 5 4 2 7 7 N 1.34770 * 119.99883 * 186.27723 * 5 4 2 8 8 C 1.46930 * 120.63376 * 5.14979 * 7 5 4 9 9 C 1.53191 * 108.77526 * 233.58734 * 8 7 5 10 10 C 1.53035 * 109.31665 * 305.36375 * 9 8 7 11 11 C 1.53044 * 109.53615 * 61.36470 * 10 9 8 12 12 C 1.46934 * 120.63062 * 185.12959 * 7 5 4 13 13 H 1.08991 * 109.58352 * 246.20058 * 12 7 5 14 14 C 1.52997 * 109.69883 * 6.55636 * 12 7 5 15 15 N 1.46508 * 109.46949 * 177.44285 * 14 12 7 16 16 C 1.46488 * 120.00042 * 264.00470 * 15 14 12 17 17 C 1.36937 * 119.99584 * 83.99937 * 15 14 12 18 18 H 1.07998 * 120.00366 * 323.20007 * 17 15 14 19 19 C 1.38814 * 119.99968 * 143.19999 * 17 15 14 20 20 N 1.31614 * 120.00595 * 164.52965 * 19 17 15 21 21 Si 1.86808 * 119.99551 * 344.52673 * 19 17 15 22 22 H 1.48497 * 109.47086 * 91.62869 * 21 19 17 23 23 H 1.48504 * 109.46738 * 211.62906 * 21 19 17 24 24 H 1.48496 * 109.47056 * 331.62450 * 21 19 17 25 25 N 1.46504 * 109.46970 * 120.00371 * 2 1 3 26 26 C 1.36338 * 125.63672 * 59.69447 * 25 2 1 27 27 C 1.34851 * 108.21876 * 179.83196 * 26 25 2 28 28 C 1.40893 * 107.41439 * 0.41985 * 27 26 25 29 29 C 1.34849 * 107.41916 * 359.73858 * 28 27 26 30 30 H 1.08996 * 109.47226 * 183.89107 * 1 2 3 31 31 H 1.08998 * 109.46722 * 303.89834 * 1 2 3 32 32 H 1.08999 * 109.46836 * 63.89268 * 1 2 3 33 33 H 1.09002 * 109.46943 * 306.01150 * 4 2 1 34 34 H 1.09002 * 109.46766 * 186.01746 * 4 2 1 35 35 H 1.09001 * 109.58351 * 353.37598 * 8 7 5 36 36 H 1.08995 * 109.58820 * 113.79772 * 8 7 5 37 37 H 1.08997 * 109.49308 * 185.40934 * 9 8 7 38 38 H 1.09001 * 109.49641 * 65.31968 * 9 8 7 39 39 H 1.09000 * 109.45979 * 301.34587 * 10 9 8 40 40 H 1.09000 * 109.46426 * 181.38326 * 10 9 8 41 41 H 1.09004 * 109.49951 * 58.58759 * 11 10 9 42 42 H 1.08996 * 109.49735 * 178.68535 * 11 10 9 43 43 H 1.09002 * 109.47383 * 297.43730 * 14 12 7 44 44 H 1.08995 * 109.47597 * 57.44659 * 14 12 7 45 45 H 1.08998 * 109.47338 * 83.97402 * 16 15 14 46 46 H 1.09005 * 109.47481 * 203.97482 * 16 15 14 47 47 H 1.09003 * 109.47346 * 323.97258 * 16 15 14 48 48 H 0.96998 * 120.00174 * 185.01444 * 20 19 17 49 49 H 1.08005 * 125.89166 * 359.95216 * 26 25 2 50 50 H 1.07996 * 126.29370 * 180.15794 * 27 26 25 51 51 H 1.08004 * 126.29215 * 179.73250 * 28 27 26 52 52 H 1.08000 * 125.89104 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.6629 0.0699 -2.4752 6 8 1.1486 1.1620 -2.3577 7 7 1.8972 -0.4361 -3.7022 8 6 2.4148 -1.8019 -3.8625 9 6 3.6751 -1.7526 -4.7318 10 6 3.3539 -1.0437 -6.0494 11 6 2.9085 0.3922 -5.7627 12 6 1.6394 0.3673 -4.9051 13 1 0.8229 -0.0777 -5.4735 14 6 1.2651 1.7948 -4.5014 15 7 1.0688 2.6070 -5.7048 16 6 2.1639 3.4345 -6.2166 17 6 -0.1383 2.5926 -6.3511 18 1 -0.7048 1.6754 -6.4168 19 6 -0.6340 3.7569 -6.9218 20 7 -1.6203 3.6955 -7.7912 21 14 0.0987 5.4108 -6.4557 22 1 1.1938 5.7506 -7.3994 23 1 -0.9546 6.4554 -6.5229 24 1 0.6393 5.3411 -5.0744 25 7 2.0184 -0.6907 1.1962 26 6 1.7560 -1.9869 1.5278 27 6 2.3799 -2.2588 2.6919 28 6 3.0441 -1.0848 3.0986 29 6 2.8056 -0.1418 2.1646 30 1 -0.3633 -1.0252 0.0697 31 1 -0.3633 0.5732 0.8530 32 1 -0.3633 0.4522 -0.9228 33 1 1.5914 -1.7131 -1.3048 34 1 3.1247 -0.8155 -1.1971 35 1 2.6611 -2.2163 -2.8849 36 1 1.6614 -2.4237 -4.3459 37 1 4.0145 -2.7677 -4.9381 38 1 4.4585 -1.2064 -4.2063 39 1 2.5534 -1.5765 -6.5627 40 1 4.2428 -1.0290 -6.6801 41 1 3.6990 0.9183 -5.2275 42 1 2.7023 0.9037 -6.7028 43 1 0.3432 1.7781 -3.9200 44 1 2.0663 2.2243 -3.9000 45 1 2.8177 2.8260 -6.8414 46 1 1.7547 4.2533 -6.8085 47 1 2.7343 3.8400 -5.3809 48 1 -1.9181 4.4998 -8.2443 49 1 1.1539 -2.6774 0.9557 50 1 2.3687 -3.2019 3.2181 51 1 3.6356 -0.9624 3.9940 52 1 3.1747 0.8730 2.1808 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158764049.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:16 Heat of formation + Delta-G solvation = 58.396393 kcal Electronic energy + Delta-G solvation = -30274.739254 eV Core-core repulsion = 26469.795445 eV Total energy + Delta-G solvation = -3804.943809 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.42122 -40.40095 -37.60148 -35.81763 -35.08559 -32.86496 -32.11322 -30.80290 -29.82432 -28.85567 -28.22524 -26.97966 -25.69362 -24.51555 -23.29402 -22.35259 -20.89778 -20.58734 -20.47321 -19.60163 -18.70473 -17.71229 -16.81656 -16.24803 -15.92170 -15.70386 -15.30987 -14.86466 -14.49693 -14.37780 -14.12344 -13.97742 -13.70899 -13.55799 -13.34584 -13.22047 -13.01743 -12.82871 -12.66194 -12.39465 -12.37405 -12.23092 -12.19077 -11.87124 -11.76382 -11.57097 -11.43309 -11.27348 -11.05407 -10.86391 -10.62251 -10.51553 -10.41144 -10.15765 -9.82039 -9.58954 -8.94478 -8.71347 -8.51341 -8.35649 -8.26007 -6.75562 -5.88604 -3.36969 2.18222 2.65359 2.68031 2.96058 3.18187 3.32338 3.50462 3.56899 4.28886 4.45914 4.55451 4.57789 4.70328 4.83602 4.90574 4.94917 5.00872 5.12104 5.17410 5.23223 5.26307 5.27513 5.39207 5.41118 5.44709 5.45340 5.51026 5.67544 5.73101 5.74968 5.80171 5.85408 6.00138 6.03191 6.07485 6.17850 6.23306 6.24336 6.27240 6.32808 6.44695 6.53114 6.64669 6.82094 6.83283 6.89792 7.15717 7.24630 7.29175 7.54085 8.10230 8.27518 8.45045 9.05609 9.77078 10.17381 11.25018 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.014065 B = 0.003254 C = 0.002853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1990.329927 B = 8603.044557 C = 9811.535793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.147 3.853 3 H 0.109 0.891 4 C -0.151 4.151 5 C 0.515 3.485 6 O -0.521 6.521 7 N -0.603 5.603 8 C 0.106 3.894 9 C -0.133 4.133 10 C -0.121 4.121 11 C -0.122 4.122 12 C 0.125 3.875 13 H 0.073 0.927 14 C 0.162 3.838 15 N -0.613 5.613 16 C 0.106 3.894 17 C -0.263 4.263 18 H 0.079 0.921 19 C 0.027 3.973 20 N -0.913 5.913 21 Si 0.900 3.100 22 H -0.289 1.289 23 H -0.306 1.306 24 H -0.271 1.271 25 N -0.441 5.441 26 C -0.014 4.014 27 C -0.206 4.206 28 C -0.207 4.207 29 C -0.013 4.013 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.093 0.907 33 H 0.095 0.905 34 H 0.098 0.902 35 H 0.079 0.921 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.060 0.940 41 H 0.055 0.945 42 H 0.088 0.912 43 H 0.081 0.919 44 H 0.044 0.956 45 H 0.014 0.986 46 H 0.046 0.954 47 H 0.025 0.975 48 H 0.262 0.738 49 H 0.156 0.844 50 H 0.131 0.869 51 H 0.132 0.868 52 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.645 -14.264 14.839 23.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.045 3.955 3 H 0.127 0.873 4 C -0.192 4.192 5 C 0.302 3.698 6 O -0.397 6.397 7 N -0.337 5.337 8 C -0.018 4.018 9 C -0.171 4.171 10 C -0.159 4.159 11 C -0.161 4.161 12 C 0.021 3.979 13 H 0.091 0.909 14 C 0.036 3.964 15 N -0.338 5.338 16 C -0.039 4.039 17 C -0.392 4.392 18 H 0.096 0.904 19 C -0.172 4.172 20 N -0.556 5.556 21 Si 0.733 3.267 22 H -0.218 1.218 23 H -0.235 1.235 24 H -0.196 1.196 25 N -0.116 5.116 26 C -0.144 4.144 27 C -0.231 4.231 28 C -0.231 4.231 29 C -0.144 4.144 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.112 0.888 33 H 0.113 0.887 34 H 0.116 0.884 35 H 0.097 0.903 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.079 0.921 41 H 0.074 0.926 42 H 0.106 0.894 43 H 0.099 0.901 44 H 0.062 0.938 45 H 0.032 0.968 46 H 0.064 0.936 47 H 0.043 0.957 48 H 0.072 0.928 49 H 0.174 0.826 50 H 0.149 0.851 51 H 0.149 0.851 52 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 11.071 -13.372 14.537 22.643 hybrid contribution 0.563 0.694 -0.010 0.893 sum 11.634 -12.679 14.526 22.519 Atomic orbital electron populations 1.22230 0.92681 1.02544 1.04664 1.21156 0.96082 0.96836 0.81431 0.87314 1.22066 1.03462 1.00673 0.92979 1.20190 0.78874 0.86690 0.84088 1.90812 1.42411 1.20861 1.85656 1.48314 1.64386 1.14816 1.06166 1.21744 0.96035 0.83515 1.00488 1.21900 0.97296 1.00905 0.97005 1.21553 1.01165 0.96813 0.96347 1.21948 0.97078 0.95680 1.01360 1.22325 0.96614 0.94987 0.84020 0.90860 1.21447 1.01236 0.86979 0.86724 1.44316 1.09868 1.51411 1.28170 1.21466 0.91027 0.94797 0.96614 1.18788 0.95382 0.94858 1.30136 0.90356 1.25470 0.95676 0.97850 0.98250 1.69747 1.29586 1.28851 1.27379 0.86651 0.76570 0.84173 0.79327 1.21768 1.23470 1.19600 1.44405 1.38863 1.10259 1.18087 1.21718 1.06571 0.86407 0.99746 1.20861 1.04822 0.99290 0.98093 1.20865 1.07099 0.93987 1.01198 1.21872 1.01229 0.99764 0.91494 0.92377 0.91878 0.88807 0.88668 0.88409 0.90262 0.91236 0.91127 0.91771 0.91834 0.92109 0.92632 0.89403 0.90057 0.93806 0.96769 0.93582 0.95658 0.92795 0.82647 0.85088 0.85058 0.82434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.77 9.08 37.16 0.34 -1.43 16 2 C 0.15 1.53 2.66 -67.92 -0.18 1.34 16 3 H 0.11 1.23 7.75 -51.93 -0.40 0.83 16 4 C -0.15 -1.46 3.59 -27.88 -0.10 -1.56 16 5 C 0.51 6.95 7.10 -10.99 -0.08 6.87 16 6 O -0.52 -8.94 9.86 5.56 0.05 -8.89 16 7 N -0.60 -8.04 2.97 -165.22 -0.49 -8.53 16 8 C 0.11 1.01 6.32 -3.71 -0.02 0.99 16 9 C -0.13 -1.24 6.08 -26.61 -0.16 -1.40 16 10 C -0.12 -1.41 5.88 -26.69 -0.16 -1.57 16 11 C -0.12 -1.86 4.52 -26.61 -0.12 -1.98 16 12 C 0.12 2.12 3.18 -67.60 -0.21 1.90 16 13 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 14 C 0.16 3.39 3.65 -4.04 -0.01 3.38 16 15 N -0.61 -14.80 2.11 -181.12 -0.38 -15.18 16 16 C 0.11 2.35 8.57 59.84 0.51 2.86 16 17 C -0.26 -7.42 9.99 -15.06 -0.15 -7.57 16 18 H 0.08 2.37 8.06 -52.49 -0.42 1.95 16 19 C 0.03 0.79 5.39 -17.43 -0.09 0.70 16 20 N -0.91 -28.34 13.96 55.49 0.77 -27.57 16 21 Si 0.90 23.36 24.69 -169.99 -4.20 19.16 16 22 H -0.29 -7.20 6.61 56.52 0.37 -6.82 16 23 H -0.31 -8.06 7.11 56.52 0.40 -7.66 16 24 H -0.27 -7.02 7.07 56.52 0.40 -6.62 16 25 N -0.44 -4.52 2.62 -110.01 -0.29 -4.81 16 26 C -0.01 -0.14 10.39 -16.75 -0.17 -0.31 16 27 C -0.21 -2.09 10.86 -39.78 -0.43 -2.52 16 28 C -0.21 -2.13 10.86 -39.78 -0.43 -2.57 16 29 C -0.01 -0.14 11.39 -16.75 -0.19 -0.33 16 30 H 0.06 0.56 7.80 -51.93 -0.40 0.15 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.09 1.22 6.21 -51.93 -0.32 0.90 16 33 H 0.10 0.76 7.33 -51.93 -0.38 0.38 16 34 H 0.10 0.87 8.11 -51.93 -0.42 0.45 16 35 H 0.08 0.58 5.90 -51.93 -0.31 0.27 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 42 H 0.09 1.55 6.21 -51.93 -0.32 1.22 16 43 H 0.08 1.90 6.26 -51.93 -0.33 1.57 16 44 H 0.04 0.92 6.93 -51.93 -0.36 0.56 16 45 H 0.01 0.29 6.51 -51.93 -0.34 -0.05 16 46 H 0.05 1.12 2.85 -51.93 -0.15 0.97 16 47 H 0.02 0.51 7.96 -51.93 -0.41 0.10 16 48 H 0.26 7.73 8.32 -40.82 -0.34 7.39 16 49 H 0.16 1.20 8.06 -52.48 -0.42 0.77 16 50 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 51 H 0.13 1.14 8.06 -52.48 -0.42 0.72 16 52 H 0.16 1.34 8.06 -52.49 -0.42 0.92 16 LS Contribution 390.07 15.07 5.88 5.88 Total: -1.00 -32.58 390.07 -9.13 -41.71 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: -8.81 Total: 1.41 kcal Atomic # 6 Polarization: -1.52 SS G_CDS: -1.67 Total: -3.19 kcal Atomic # 7 Polarization: -55.70 SS G_CDS: -0.39 Total: -56.09 kcal Atomic # 8 Polarization: -8.94 SS G_CDS: 0.05 Total: -8.89 kcal Atomic # 14 Polarization: 23.36 SS G_CDS: -4.20 Total: 19.16 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -32.58 -9.13 -41.71 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158764049.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.111 kcal (2) G-P(sol) polarization free energy of solvation -32.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.714 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds