Wall clock time and date at job start Tue Mar 31 2020 17:27:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.47259 * 2 1 4 4 C 1.53006 * 109.46783 * 240.00191 * 2 1 3 5 5 C 1.50696 * 109.47392 * 66.01697 * 4 2 1 6 6 O 1.21281 * 120.00018 * 6.27128 * 5 4 2 7 7 N 1.34770 * 119.99883 * 186.27723 * 5 4 2 8 8 C 1.46930 * 120.63376 * 5.14979 * 7 5 4 9 9 C 1.53191 * 108.77526 * 233.58734 * 8 7 5 10 10 C 1.53035 * 109.31665 * 305.36375 * 9 8 7 11 11 C 1.53044 * 109.53615 * 61.36470 * 10 9 8 12 12 C 1.46934 * 120.63062 * 185.12959 * 7 5 4 13 13 H 1.08991 * 109.58352 * 246.20058 * 12 7 5 14 14 C 1.52997 * 109.69883 * 6.55636 * 12 7 5 15 15 N 1.46508 * 109.46949 * 177.44285 * 14 12 7 16 16 C 1.46488 * 120.00042 * 264.00470 * 15 14 12 17 17 C 1.36937 * 119.99584 * 83.99937 * 15 14 12 18 18 H 1.07998 * 120.00366 * 323.20007 * 17 15 14 19 19 C 1.38814 * 119.99968 * 143.19999 * 17 15 14 20 20 N 1.31614 * 120.00595 * 164.52965 * 19 17 15 21 21 Si 1.86808 * 119.99551 * 344.52673 * 19 17 15 22 22 H 1.48497 * 109.47086 * 91.62869 * 21 19 17 23 23 H 1.48504 * 109.46738 * 211.62906 * 21 19 17 24 24 H 1.48496 * 109.47056 * 331.62450 * 21 19 17 25 25 N 1.46504 * 109.46970 * 120.00371 * 2 1 3 26 26 C 1.36338 * 125.63672 * 59.69447 * 25 2 1 27 27 C 1.34851 * 108.21876 * 179.83196 * 26 25 2 28 28 C 1.40893 * 107.41439 * 0.41985 * 27 26 25 29 29 C 1.34849 * 107.41916 * 359.73858 * 28 27 26 30 30 H 1.08996 * 109.47226 * 183.89107 * 1 2 3 31 31 H 1.08998 * 109.46722 * 303.89834 * 1 2 3 32 32 H 1.08999 * 109.46836 * 63.89268 * 1 2 3 33 33 H 1.09002 * 109.46943 * 306.01150 * 4 2 1 34 34 H 1.09002 * 109.46766 * 186.01746 * 4 2 1 35 35 H 1.09001 * 109.58351 * 353.37598 * 8 7 5 36 36 H 1.08995 * 109.58820 * 113.79772 * 8 7 5 37 37 H 1.08997 * 109.49308 * 185.40934 * 9 8 7 38 38 H 1.09001 * 109.49641 * 65.31968 * 9 8 7 39 39 H 1.09000 * 109.45979 * 301.34587 * 10 9 8 40 40 H 1.09000 * 109.46426 * 181.38326 * 10 9 8 41 41 H 1.09004 * 109.49951 * 58.58759 * 11 10 9 42 42 H 1.08996 * 109.49735 * 178.68535 * 11 10 9 43 43 H 1.09002 * 109.47383 * 297.43730 * 14 12 7 44 44 H 1.08995 * 109.47597 * 57.44659 * 14 12 7 45 45 H 1.08998 * 109.47338 * 83.97402 * 16 15 14 46 46 H 1.09005 * 109.47481 * 203.97482 * 16 15 14 47 47 H 1.09003 * 109.47346 * 323.97258 * 16 15 14 48 48 H 0.96998 * 120.00174 * 185.01444 * 20 19 17 49 49 H 1.08005 * 125.89166 * 359.95216 * 26 25 2 50 50 H 1.07996 * 126.29370 * 180.15794 * 27 26 25 51 51 H 1.08004 * 126.29215 * 179.73250 * 28 27 26 52 52 H 1.08000 * 125.89104 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.6629 0.0699 -2.4752 6 8 1.1486 1.1620 -2.3577 7 7 1.8972 -0.4361 -3.7022 8 6 2.4148 -1.8019 -3.8625 9 6 3.6751 -1.7526 -4.7318 10 6 3.3539 -1.0437 -6.0494 11 6 2.9085 0.3922 -5.7627 12 6 1.6394 0.3673 -4.9051 13 1 0.8229 -0.0777 -5.4735 14 6 1.2651 1.7948 -4.5014 15 7 1.0688 2.6070 -5.7048 16 6 2.1639 3.4345 -6.2166 17 6 -0.1383 2.5926 -6.3511 18 1 -0.7048 1.6754 -6.4168 19 6 -0.6340 3.7569 -6.9218 20 7 -1.6203 3.6955 -7.7912 21 14 0.0987 5.4108 -6.4557 22 1 1.1938 5.7506 -7.3994 23 1 -0.9546 6.4554 -6.5229 24 1 0.6393 5.3411 -5.0744 25 7 2.0184 -0.6907 1.1962 26 6 1.7560 -1.9869 1.5278 27 6 2.3799 -2.2588 2.6919 28 6 3.0441 -1.0848 3.0986 29 6 2.8056 -0.1418 2.1646 30 1 -0.3633 -1.0252 0.0697 31 1 -0.3633 0.5732 0.8530 32 1 -0.3633 0.4522 -0.9228 33 1 1.5914 -1.7131 -1.3048 34 1 3.1247 -0.8155 -1.1971 35 1 2.6611 -2.2163 -2.8849 36 1 1.6614 -2.4237 -4.3459 37 1 4.0145 -2.7677 -4.9381 38 1 4.4585 -1.2064 -4.2063 39 1 2.5534 -1.5765 -6.5627 40 1 4.2428 -1.0290 -6.6801 41 1 3.6990 0.9183 -5.2275 42 1 2.7023 0.9037 -6.7028 43 1 0.3432 1.7781 -3.9200 44 1 2.0663 2.2243 -3.9000 45 1 2.8177 2.8260 -6.8414 46 1 1.7547 4.2533 -6.8085 47 1 2.7343 3.8400 -5.3809 48 1 -1.9181 4.4998 -8.2443 49 1 1.1539 -2.6774 0.9557 50 1 2.3687 -3.2019 3.2181 51 1 3.6356 -0.9624 3.9940 52 1 3.1747 0.8730 2.1808 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158764049.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:15 Heat of formation + Delta-G solvation = 40.360781 kcal Electronic energy + Delta-G solvation = -30275.521337 eV Core-core repulsion = 26469.795445 eV Total energy + Delta-G solvation = -3805.725892 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.22629 -41.47564 -38.75824 -37.49148 -36.03729 -34.09285 -33.81448 -32.36987 -30.64339 -29.59048 -29.16052 -28.46142 -27.60223 -25.67974 -24.37469 -23.57217 -22.22172 -21.80859 -21.29766 -20.42085 -19.71447 -19.01159 -18.38666 -17.54532 -17.14829 -17.11782 -16.73338 -15.83695 -15.53126 -15.37207 -15.31469 -15.18366 -14.88641 -14.70744 -14.56550 -14.44818 -14.27595 -14.26199 -14.00332 -13.81273 -13.56796 -13.15051 -13.11076 -13.00596 -12.91523 -12.77241 -12.56258 -12.45395 -12.27777 -12.11183 -12.01079 -11.89839 -11.78809 -11.62989 -11.58712 -11.43787 -10.70139 -10.22995 -9.51759 -9.48487 -8.99912 -8.77171 -8.16026 -5.61554 1.24051 1.38388 1.42927 1.49425 1.61762 1.76561 2.21886 2.23587 2.37670 3.08846 3.40175 3.48348 3.59460 3.77817 3.89785 3.93682 4.02969 4.10615 4.16001 4.22378 4.36856 4.41011 4.44209 4.45092 4.46781 4.49066 4.59885 4.66628 4.69639 4.72827 4.75883 4.83660 4.86801 4.87834 4.95233 5.03157 5.04679 5.12173 5.17936 5.19324 5.26759 5.36411 5.46540 5.47073 5.50394 5.71323 5.92831 6.13853 6.16783 6.41181 6.49262 6.54987 6.95324 7.22556 7.61951 8.02937 9.01210 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.014065 B = 0.003254 C = 0.002853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1990.329927 B = 8603.044557 C = 9811.535793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.153 3.847 3 H 0.094 0.906 4 C -0.134 4.134 5 C 0.509 3.491 6 O -0.565 6.565 7 N -0.603 5.603 8 C 0.099 3.901 9 C -0.126 4.126 10 C -0.118 4.118 11 C -0.115 4.115 12 C 0.136 3.864 13 H 0.044 0.956 14 C 0.172 3.828 15 N -0.625 5.625 16 C 0.104 3.896 17 C -0.249 4.249 18 H 0.042 0.958 19 C -0.031 4.031 20 N -0.959 5.959 21 Si 0.964 3.036 22 H -0.268 1.268 23 H -0.312 1.312 24 H -0.270 1.270 25 N -0.442 5.442 26 C -0.017 4.017 27 C -0.221 4.221 28 C -0.219 4.219 29 C -0.030 4.030 30 H 0.073 0.927 31 H 0.057 0.943 32 H 0.067 0.933 33 H 0.122 0.878 34 H 0.116 0.884 35 H 0.114 0.886 36 H 0.074 0.926 37 H 0.102 0.898 38 H 0.067 0.933 39 H 0.057 0.943 40 H 0.074 0.926 41 H 0.058 0.942 42 H 0.058 0.942 43 H 0.050 0.950 44 H 0.046 0.954 45 H 0.036 0.964 46 H 0.029 0.971 47 H 0.046 0.954 48 H 0.263 0.737 49 H 0.178 0.822 50 H 0.145 0.855 51 H 0.142 0.858 52 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.403 -16.200 16.293 27.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.051 3.949 3 H 0.112 0.888 4 C -0.174 4.174 5 C 0.298 3.702 6 O -0.444 6.444 7 N -0.336 5.336 8 C -0.022 4.022 9 C -0.164 4.164 10 C -0.156 4.156 11 C -0.153 4.153 12 C 0.031 3.969 13 H 0.062 0.938 14 C 0.047 3.953 15 N -0.351 5.351 16 C -0.040 4.040 17 C -0.379 4.379 18 H 0.060 0.940 19 C -0.226 4.226 20 N -0.604 5.604 21 Si 0.794 3.206 22 H -0.196 1.196 23 H -0.241 1.241 24 H -0.195 1.195 25 N -0.118 5.118 26 C -0.147 4.147 27 C -0.245 4.245 28 C -0.243 4.243 29 C -0.160 4.160 30 H 0.092 0.908 31 H 0.076 0.924 32 H 0.086 0.914 33 H 0.140 0.860 34 H 0.135 0.865 35 H 0.132 0.868 36 H 0.093 0.907 37 H 0.120 0.880 38 H 0.086 0.914 39 H 0.076 0.924 40 H 0.093 0.907 41 H 0.077 0.923 42 H 0.077 0.923 43 H 0.068 0.932 44 H 0.065 0.935 45 H 0.054 0.946 46 H 0.048 0.952 47 H 0.065 0.935 48 H 0.072 0.928 49 H 0.196 0.804 50 H 0.162 0.838 51 H 0.160 0.840 52 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 13.885 -15.362 16.018 26.179 hybrid contribution -0.316 1.188 -0.392 1.290 sum 13.568 -14.174 15.626 25.084 Atomic orbital electron populations 1.22135 0.93296 1.03127 1.03004 1.20979 0.95493 0.96419 0.82056 0.88767 1.21968 1.04617 1.00779 0.90066 1.20880 0.77838 0.86464 0.85019 1.90802 1.44266 1.23070 1.86264 1.48346 1.64336 1.16096 1.04867 1.22089 0.96309 0.81106 1.02721 1.21886 0.97009 1.02338 0.95137 1.21533 1.01435 0.94304 0.98295 1.21815 0.95912 0.98257 0.99336 1.21748 0.96829 0.92737 0.85618 0.93817 1.21340 0.99834 0.88978 0.85117 1.44433 1.09190 1.52480 1.29002 1.21522 0.90618 0.94323 0.97502 1.18650 0.96450 0.93482 1.29306 0.94028 1.26111 0.96663 1.01289 0.98539 1.69879 1.31741 1.29689 1.29090 0.85612 0.76106 0.79639 0.79205 1.19563 1.24121 1.19518 1.44379 1.39013 1.10525 1.17906 1.22127 1.06381 0.86308 0.99888 1.21160 1.04962 0.99853 0.98524 1.21147 1.07298 0.94249 1.01622 1.22174 1.01606 1.00490 0.91718 0.90782 0.92387 0.91419 0.85977 0.86548 0.86814 0.90720 0.87990 0.91377 0.92417 0.90702 0.92327 0.92344 0.93218 0.93532 0.94596 0.95239 0.93544 0.92829 0.80447 0.83760 0.84044 0.81456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.31 9.08 71.98 0.65 -2.65 16 2 C 0.15 2.94 2.66 44.99 0.12 3.06 16 3 H 0.09 2.10 7.75 -2.39 -0.02 2.08 16 4 C -0.13 -2.20 3.59 29.85 0.11 -2.09 16 5 C 0.51 13.18 7.10 87.66 0.62 13.80 16 6 O -0.56 -19.80 9.86 -3.03 -0.03 -19.83 16 7 N -0.60 -15.24 2.97 -795.04 -2.36 -17.60 16 8 C 0.10 1.54 6.32 86.36 0.55 2.09 16 9 C -0.13 -1.82 6.08 30.67 0.19 -1.64 16 10 C -0.12 -2.48 5.88 30.62 0.18 -2.30 16 11 C -0.11 -3.40 4.52 30.67 0.14 -3.26 16 12 C 0.14 4.67 3.18 44.97 0.14 4.81 16 13 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 14 C 0.17 7.40 3.65 86.38 0.32 7.71 16 15 N -0.62 -30.82 2.11 -726.95 -1.54 -32.36 16 16 C 0.10 4.56 8.57 127.77 1.09 5.65 16 17 C -0.25 -14.64 9.99 84.03 0.84 -13.80 16 18 H 0.04 2.70 8.06 -2.91 -0.02 2.68 16 19 C -0.03 -1.86 5.39 84.86 0.46 -1.40 16 20 N -0.96 -61.65 13.96 21.65 0.30 -61.35 16 21 Si 0.96 49.15 24.69 68.60 1.69 50.85 16 22 H -0.27 -12.69 6.61 99.48 0.66 -12.04 16 23 H -0.31 -16.09 7.11 99.48 0.71 -15.38 16 24 H -0.27 -13.59 7.07 99.48 0.70 -12.89 16 25 N -0.44 -8.08 2.62 -501.98 -1.31 -9.40 16 26 C -0.02 -0.29 10.39 83.21 0.86 0.58 16 27 C -0.22 -3.92 10.86 22.14 0.24 -3.68 16 28 C -0.22 -4.10 10.86 22.14 0.24 -3.86 16 29 C -0.03 -0.57 11.39 83.21 0.95 0.37 16 30 H 0.07 1.28 7.80 -2.39 -0.02 1.26 16 31 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.07 1.81 6.21 -2.39 -0.01 1.79 16 33 H 0.12 1.39 7.33 -2.39 -0.02 1.38 16 34 H 0.12 1.58 8.11 -2.39 -0.02 1.56 16 35 H 0.11 1.04 5.90 -2.39 -0.01 1.02 16 36 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.06 1.69 8.14 -2.38 -0.02 1.67 16 42 H 0.06 2.06 6.21 -2.39 -0.01 2.04 16 43 H 0.05 2.45 6.26 -2.39 -0.01 2.43 16 44 H 0.05 1.96 6.93 -2.39 -0.02 1.95 16 45 H 0.04 1.42 6.51 -2.39 -0.02 1.41 16 46 H 0.03 1.39 2.85 -2.38 -0.01 1.39 16 47 H 0.05 1.82 7.96 -2.39 -0.02 1.80 16 48 H 0.26 15.99 8.32 -92.71 -0.77 15.22 16 49 H 0.18 2.02 8.06 -2.91 -0.02 1.99 16 50 H 0.14 2.07 8.06 -2.91 -0.02 2.04 16 51 H 0.14 2.23 8.06 -2.91 -0.02 2.20 16 52 H 0.17 2.65 8.06 -2.91 -0.02 2.63 16 Total: -1.00 -74.72 390.07 5.28 -69.44 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: 0.83 Total: 16.84 kcal Atomic # 6 Polarization: -4.30 SS G_CDS: 7.70 Total: 3.40 kcal Atomic # 7 Polarization: -115.79 SS G_CDS: -4.91 Total: -120.70 kcal Atomic # 8 Polarization: -19.80 SS G_CDS: -0.03 Total: -19.83 kcal Atomic # 14 Polarization: 49.15 SS G_CDS: 1.69 Total: 50.85 kcal Total: -74.72 5.28 -69.44 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158764049.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.796 kcal (2) G-P(sol) polarization free energy of solvation -74.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.436 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds