Wall clock time and date at job start Tue Mar 31 2020 18:40:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35960 * 117.00274 * 2 1 4 4 C 1.39410 * 119.82043 * 0.02562 * 3 2 1 5 5 C 1.38098 * 120.57227 * 179.72131 * 4 3 2 6 6 C 1.38721 * 120.19934 * 0.51165 * 5 4 3 7 7 N 1.38857 * 120.18236 * 179.76463 * 6 5 4 8 8 C 1.46497 * 119.99635 * 359.72809 * 7 6 5 9 9 C 1.53011 * 109.46683 * 179.97438 * 8 7 6 10 10 C 1.52996 * 109.47030 * 179.97438 * 9 8 7 11 11 N 1.46897 * 109.47051 * 180.02562 * 10 9 8 12 12 C 1.46955 * 110.99976 * 46.18295 * 11 10 9 13 13 C 1.53046 * 109.36839 * 183.16738 * 12 11 10 14 14 N 1.46955 * 109.37932 * 301.63202 * 13 12 11 15 15 C 1.46907 * 110.99936 * 183.17845 * 14 13 12 16 16 C 1.46953 * 110.88591 * 59.30727 * 14 13 12 17 17 C 1.46965 * 110.99980 * 169.99836 * 11 10 9 18 18 C 1.41549 * 119.63419 * 359.49574 * 6 5 4 19 19 C 1.41026 * 120.27457 * 180.27149 * 18 6 5 20 20 H 1.08004 * 119.99960 * 333.62960 * 19 18 6 21 21 C 1.39904 * 120.00068 * 153.63170 * 19 18 6 22 22 N 1.30892 * 119.99445 * 344.00162 * 21 19 18 23 23 Si 1.86797 * 120.00081 * 164.00136 * 21 19 18 24 24 H 1.48501 * 109.47098 * 90.00027 * 23 21 19 25 25 H 1.48505 * 109.47073 * 210.00005 * 23 21 19 26 26 H 1.48502 * 109.47144 * 330.00210 * 23 21 19 27 27 C 1.37839 * 119.82195 * 180.02562 * 3 2 1 28 28 H 1.08998 * 109.47313 * 300.00676 * 1 2 3 29 29 H 1.09002 * 109.47273 * 59.99987 * 1 2 3 30 30 H 1.08996 * 109.47405 * 180.02562 * 1 2 3 31 31 H 1.08001 * 119.71960 * 359.97438 * 4 3 2 32 32 H 1.08001 * 119.90403 * 180.25898 * 5 4 3 33 33 H 0.97000 * 119.99709 * 179.72639 * 7 6 5 34 34 H 1.08992 * 109.47687 * 60.00024 * 8 7 6 35 35 H 1.08994 * 109.47455 * 299.99439 * 8 7 6 36 36 H 1.09002 * 109.46619 * 59.99799 * 9 8 7 37 37 H 1.08994 * 109.47013 * 300.00072 * 9 8 7 38 38 H 1.09004 * 109.47019 * 60.00173 * 10 9 8 39 39 H 1.09004 * 109.47560 * 300.00169 * 10 9 8 40 40 H 1.09004 * 109.47397 * 63.20645 * 12 11 10 41 41 H 1.09009 * 109.50428 * 303.14187 * 12 11 10 42 42 H 1.08995 * 109.49207 * 181.65222 * 13 12 11 43 43 H 1.09001 * 109.49029 * 61.60505 * 13 12 11 44 44 H 1.08990 * 109.47330 * 59.99751 * 15 14 13 45 45 H 1.09002 * 109.46963 * 179.97438 * 15 14 13 46 46 H 1.08997 * 109.46698 * 299.99437 * 15 14 13 47 47 H 1.08998 * 109.48891 * 60.64697 * 16 14 13 48 48 H 1.08993 * 109.49147 * 180.69365 * 16 14 13 49 49 H 1.09005 * 109.48526 * 56.84945 * 17 11 10 50 50 H 1.08997 * 109.48878 * 296.78562 * 17 11 10 51 51 H 0.97005 * 119.99231 * 179.97438 * 22 21 19 52 52 H 1.08004 * 120.10544 * 0.04284 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2834 2.3782 0.0005 5 6 1.8942 3.6168 0.0063 6 6 3.2781 3.7123 0.0010 7 7 3.8919 4.9579 0.0019 8 6 3.0775 6.1757 0.0025 9 6 3.9933 7.4015 0.0041 10 6 3.1429 8.6733 0.0040 11 7 4.0221 9.8502 0.0049 12 6 5.0988 9.7039 -0.9844 13 6 6.0355 10.9111 -0.8974 14 7 5.2684 12.1417 -1.1355 15 6 6.1476 13.3186 -1.1347 16 6 4.1919 12.2878 -0.1459 17 6 3.2549 11.0808 -0.2334 18 6 4.0611 2.5331 0.0004 19 6 5.4690 2.6145 0.0007 20 1 5.9598 3.4826 -0.4140 21 6 6.2299 1.5709 0.5383 22 7 5.6637 0.6791 1.3112 23 14 8.0537 1.4501 0.1531 24 1 8.8259 2.2060 1.1717 25 1 8.4706 0.0249 0.1730 26 1 8.3146 2.0234 -1.1917 27 6 3.4230 1.2792 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 0.2053 2.3131 0.0005 32 1 1.2927 4.5137 0.0109 33 1 4.8598 5.0216 0.0021 34 1 2.4482 6.1916 0.8922 35 1 2.4487 6.1927 -0.8876 36 1 4.6229 7.3857 -0.8856 37 1 4.6218 7.3842 0.8943 38 1 2.5130 8.6892 0.8935 39 1 2.5146 8.6904 -0.8865 40 1 4.6684 9.6489 -1.9844 41 1 5.6603 8.7924 -0.7792 42 1 6.8182 10.8191 -1.6503 43 1 6.4871 10.9503 0.0939 44 1 6.8946 13.2147 -1.9216 45 1 5.5544 14.2154 -1.3136 46 1 6.6461 13.3990 -0.1688 47 1 4.6222 12.3425 0.8541 48 1 3.6309 13.1996 -0.3506 49 1 2.4721 11.1729 0.5196 50 1 2.8036 11.0418 -1.2247 51 1 6.1913 -0.0448 1.6837 52 1 4.0100 0.3726 -0.0017 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161708592.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:07 Heat of formation + Delta-G solvation = -1.137261 kcal Electronic energy + Delta-G solvation = -28336.409252 eV Core-core repulsion = 24528.883870 eV Total energy + Delta-G solvation = -3807.525382 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -39.61058 -38.64570 -37.17524 -36.23209 -34.44009 -33.25351 -31.55299 -30.99785 -29.64242 -28.64676 -27.52950 -25.79680 -25.09336 -24.51130 -24.01653 -23.10439 -21.40903 -20.36107 -19.96099 -19.80918 -17.57113 -16.58657 -16.17570 -15.76113 -15.62406 -15.33908 -15.16501 -15.15894 -14.86331 -14.71629 -14.64252 -14.37414 -14.17234 -13.74451 -13.15599 -12.87895 -12.76715 -12.54234 -12.42290 -12.23175 -12.04293 -11.71554 -11.65324 -11.52456 -11.39911 -11.33416 -11.15479 -11.09214 -11.02622 -10.92644 -10.85584 -10.63719 -10.46158 -10.08433 -9.93201 -9.31984 -9.06943 -8.71289 -8.45954 -8.31287 -7.35538 -6.68164 -5.93944 -4.15289 2.83357 3.12060 3.14898 3.21854 3.28221 3.60765 3.67934 3.99538 4.42695 4.52746 4.62467 4.72925 4.74351 4.86037 5.01360 5.04011 5.09401 5.23417 5.23723 5.24911 5.32566 5.41294 5.50851 5.52380 5.60406 5.64939 5.66240 5.73403 5.78424 5.82677 5.84907 5.87519 5.92917 6.00168 6.23539 6.32028 6.36982 6.43143 6.64448 6.67289 6.90760 6.91947 6.93113 7.04004 7.22015 7.50568 7.58913 7.68567 7.95543 8.10327 8.30433 8.65197 8.84900 8.90533 9.02728 9.17802 10.31248 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.011699 B = 0.002476 C = 0.002076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2392.844039 B =11304.878181 C =13485.980128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.332 6.332 3 C 0.091 3.909 4 C -0.276 4.276 5 C -0.150 4.150 6 C 0.095 3.905 7 N -0.749 5.749 8 C 0.141 3.859 9 C -0.133 4.133 10 C 0.061 3.939 11 N -0.540 5.540 12 C 0.050 3.950 13 C 0.056 3.944 14 N -0.547 5.547 15 C 0.025 3.975 16 C 0.057 3.943 17 C 0.056 3.944 18 C 0.097 3.903 19 C -0.462 4.462 20 H 0.074 0.926 21 C 0.076 3.924 22 N -0.793 5.793 23 Si 0.904 3.096 24 H -0.272 1.272 25 H -0.277 1.277 26 H -0.262 1.262 27 C -0.170 4.170 28 H 0.042 0.958 29 H 0.041 0.959 30 H 0.079 0.921 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.394 0.606 34 H 0.044 0.956 35 H 0.042 0.958 36 H 0.068 0.932 37 H 0.075 0.925 38 H 0.078 0.922 39 H 0.036 0.964 40 H 0.042 0.958 41 H 0.090 0.910 42 H 0.079 0.921 43 H 0.043 0.957 44 H 0.068 0.932 45 H 0.067 0.933 46 H 0.026 0.974 47 H 0.042 0.958 48 H 0.077 0.923 49 H 0.079 0.921 50 H 0.042 0.958 51 H 0.279 0.721 52 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.919 18.140 -2.710 18.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.246 6.246 3 C 0.047 3.953 4 C -0.297 4.297 5 C -0.174 4.174 6 C -0.003 4.003 7 N -0.385 5.385 8 C 0.014 3.986 9 C -0.170 4.170 10 C -0.067 4.067 11 N -0.265 5.265 12 C -0.079 4.079 13 C -0.072 4.072 14 N -0.272 5.272 15 C -0.123 4.123 16 C -0.071 4.071 17 C -0.072 4.072 18 C 0.093 3.907 19 C -0.492 4.492 20 H 0.092 0.908 21 C -0.141 4.141 22 N -0.418 5.418 23 Si 0.728 3.272 24 H -0.197 1.197 25 H -0.202 1.202 26 H -0.186 1.186 27 C -0.192 4.192 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.098 0.902 31 H 0.110 0.890 32 H 0.108 0.892 33 H 0.229 0.771 34 H 0.062 0.938 35 H 0.060 0.940 36 H 0.087 0.913 37 H 0.094 0.906 38 H 0.096 0.904 39 H 0.054 0.946 40 H 0.060 0.940 41 H 0.108 0.892 42 H 0.097 0.903 43 H 0.061 0.939 44 H 0.087 0.913 45 H 0.086 0.914 46 H 0.044 0.956 47 H 0.060 0.940 48 H 0.096 0.904 49 H 0.098 0.902 50 H 0.060 0.940 51 H 0.090 0.910 52 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -1.926 17.858 -2.561 18.143 hybrid contribution 0.813 0.128 -0.001 0.823 sum -1.113 17.986 -2.562 18.201 Atomic orbital electron populations 1.22692 0.81278 1.01516 1.00244 1.85994 1.19025 1.29198 1.90420 1.18805 0.92410 0.82354 1.01697 1.20174 0.96895 0.92174 1.20446 1.19763 0.92263 0.95669 1.09692 1.17848 0.91037 0.85178 1.06277 1.43853 1.07314 1.01405 1.85972 1.20891 0.93583 0.84342 0.99754 1.21889 0.98935 0.93096 1.03128 1.22027 0.94630 0.88890 1.01118 1.62214 1.12602 1.02355 1.49359 1.22297 0.93423 0.98130 0.94004 1.22200 0.95557 0.89080 1.00365 1.62166 1.12732 1.02802 1.49512 1.22341 0.96610 0.92984 1.00360 1.22161 0.93148 0.97931 0.93872 1.22149 0.95451 0.89209 1.00376 1.16960 0.92779 0.88549 0.92453 1.19096 0.90787 1.03707 1.35618 0.90814 1.25799 1.00640 0.94784 0.92885 1.69865 1.38091 1.11659 1.22223 0.86397 0.82601 0.78272 0.79901 1.19730 1.20213 1.18647 1.20298 0.89233 0.98577 1.11065 0.93951 0.94003 0.90206 0.88998 0.89206 0.77060 0.93786 0.94019 0.91302 0.90590 0.90365 0.94553 0.93951 0.89208 0.90296 0.93907 0.91332 0.91448 0.95585 0.93967 0.90424 0.90236 0.93973 0.91046 0.85680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.66 9.81 101.05 0.99 1.65 16 2 O -0.33 -7.65 10.49 -19.61 -0.21 -7.85 16 3 C 0.09 2.30 6.67 -39.29 -0.26 2.04 16 4 C -0.28 -6.41 9.03 -39.20 -0.35 -6.76 16 5 C -0.15 -3.43 9.28 -39.45 -0.37 -3.80 16 6 C 0.10 2.28 6.68 -83.24 -0.56 1.72 16 7 N -0.75 -15.00 5.63 -58.18 -0.33 -15.32 16 8 C 0.14 2.22 4.90 -4.04 -0.02 2.20 16 9 C -0.13 -1.68 4.59 -26.73 -0.12 -1.80 16 10 C 0.06 0.68 5.28 -3.83 -0.02 0.66 16 11 N -0.54 -5.85 4.86 -234.46 -1.14 -6.99 16 12 C 0.05 0.52 4.92 -3.77 -0.02 0.50 16 13 C 0.06 0.54 5.62 -3.77 -0.02 0.51 16 14 N -0.55 -5.11 4.97 -242.77 -1.21 -6.31 16 15 C 0.03 0.18 9.60 60.07 0.58 0.76 16 16 C 0.06 0.50 5.62 -3.77 -0.02 0.48 16 17 C 0.06 0.53 5.58 -3.76 -0.02 0.51 16 18 C 0.10 2.58 5.57 -106.65 -0.59 1.99 16 19 C -0.46 -11.93 8.48 -37.90 -0.32 -12.25 16 20 H 0.07 1.79 6.71 -52.48 -0.35 1.44 16 21 C 0.08 1.92 5.16 -17.33 -0.09 1.83 16 22 N -0.79 -20.97 10.97 55.55 0.61 -20.36 16 23 Si 0.90 18.74 29.59 -169.99 -5.03 13.71 16 24 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 25 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 26 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 27 C -0.17 -4.64 8.59 -38.80 -0.33 -4.98 16 28 H 0.04 0.69 7.65 -51.93 -0.40 0.29 16 29 H 0.04 0.67 7.65 -51.93 -0.40 0.27 16 30 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.09 1.89 6.26 -52.49 -0.33 1.56 16 32 H 0.09 1.82 6.71 -52.49 -0.35 1.47 16 33 H 0.39 7.80 6.70 -40.82 -0.27 7.53 16 34 H 0.04 0.71 7.93 -51.93 -0.41 0.30 16 35 H 0.04 0.66 7.95 -51.93 -0.41 0.25 16 36 H 0.07 0.86 6.26 -51.93 -0.33 0.54 16 37 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 38 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.04 0.40 8.08 -51.93 -0.42 -0.02 16 40 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.09 0.95 6.00 -51.92 -0.31 0.64 16 42 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 43 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 45 H 0.07 0.42 8.13 -51.93 -0.42 0.00 16 46 H 0.03 0.19 8.14 -51.93 -0.42 -0.24 16 47 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 48 H 0.08 0.57 8.13 -51.93 -0.42 0.14 16 49 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 50 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 51 H 0.28 6.77 8.30 -40.82 -0.34 6.43 16 52 H 0.13 3.59 6.23 -52.48 -0.33 3.27 16 LS Contribution 401.46 15.07 6.05 6.05 Total: -1.00 -29.39 401.46 -11.74 -41.13 By element: Atomic # 1 Polarization: 19.63 SS G_CDS: -8.94 Total: 10.69 kcal Atomic # 6 Polarization: -13.19 SS G_CDS: -1.55 Total: -14.74 kcal Atomic # 7 Polarization: -46.93 SS G_CDS: -2.06 Total: -48.99 kcal Atomic # 8 Polarization: -7.65 SS G_CDS: -0.21 Total: -7.85 kcal Atomic # 14 Polarization: 18.74 SS G_CDS: -5.03 Total: 13.71 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -29.39 -11.74 -41.13 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161708592.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.993 kcal (2) G-P(sol) polarization free energy of solvation -29.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds