Wall clock time and date at job start Tue Mar 31 2020 18:40:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35960 * 117.00274 * 2 1 4 4 C 1.39410 * 119.82043 * 0.02562 * 3 2 1 5 5 C 1.38098 * 120.57227 * 179.72131 * 4 3 2 6 6 C 1.38721 * 120.19934 * 0.51165 * 5 4 3 7 7 N 1.38857 * 120.18236 * 179.76463 * 6 5 4 8 8 C 1.46497 * 119.99635 * 359.72809 * 7 6 5 9 9 C 1.53011 * 109.46683 * 179.97438 * 8 7 6 10 10 C 1.52996 * 109.47030 * 179.97438 * 9 8 7 11 11 N 1.46897 * 109.47051 * 180.02562 * 10 9 8 12 12 C 1.46955 * 110.99976 * 46.18295 * 11 10 9 13 13 C 1.53046 * 109.36839 * 183.16738 * 12 11 10 14 14 N 1.46955 * 109.37932 * 301.63202 * 13 12 11 15 15 C 1.46907 * 110.99936 * 183.17845 * 14 13 12 16 16 C 1.46953 * 110.88591 * 59.30727 * 14 13 12 17 17 C 1.46965 * 110.99980 * 169.99836 * 11 10 9 18 18 C 1.41549 * 119.63419 * 359.49574 * 6 5 4 19 19 C 1.41026 * 120.27457 * 180.27149 * 18 6 5 20 20 H 1.08004 * 119.99960 * 333.62960 * 19 18 6 21 21 C 1.39904 * 120.00068 * 153.63170 * 19 18 6 22 22 N 1.30892 * 119.99445 * 344.00162 * 21 19 18 23 23 Si 1.86797 * 120.00081 * 164.00136 * 21 19 18 24 24 H 1.48501 * 109.47098 * 90.00027 * 23 21 19 25 25 H 1.48505 * 109.47073 * 210.00005 * 23 21 19 26 26 H 1.48502 * 109.47144 * 330.00210 * 23 21 19 27 27 C 1.37839 * 119.82195 * 180.02562 * 3 2 1 28 28 H 1.08998 * 109.47313 * 300.00676 * 1 2 3 29 29 H 1.09002 * 109.47273 * 59.99987 * 1 2 3 30 30 H 1.08996 * 109.47405 * 180.02562 * 1 2 3 31 31 H 1.08001 * 119.71960 * 359.97438 * 4 3 2 32 32 H 1.08001 * 119.90403 * 180.25898 * 5 4 3 33 33 H 0.97000 * 119.99709 * 179.72639 * 7 6 5 34 34 H 1.08992 * 109.47687 * 60.00024 * 8 7 6 35 35 H 1.08994 * 109.47455 * 299.99439 * 8 7 6 36 36 H 1.09002 * 109.46619 * 59.99799 * 9 8 7 37 37 H 1.08994 * 109.47013 * 300.00072 * 9 8 7 38 38 H 1.09004 * 109.47019 * 60.00173 * 10 9 8 39 39 H 1.09004 * 109.47560 * 300.00169 * 10 9 8 40 40 H 1.09004 * 109.47397 * 63.20645 * 12 11 10 41 41 H 1.09009 * 109.50428 * 303.14187 * 12 11 10 42 42 H 1.08995 * 109.49207 * 181.65222 * 13 12 11 43 43 H 1.09001 * 109.49029 * 61.60505 * 13 12 11 44 44 H 1.08990 * 109.47330 * 59.99751 * 15 14 13 45 45 H 1.09002 * 109.46963 * 179.97438 * 15 14 13 46 46 H 1.08997 * 109.46698 * 299.99437 * 15 14 13 47 47 H 1.08998 * 109.48891 * 60.64697 * 16 14 13 48 48 H 1.08993 * 109.49147 * 180.69365 * 16 14 13 49 49 H 1.09005 * 109.48526 * 56.84945 * 17 11 10 50 50 H 1.08997 * 109.48878 * 296.78562 * 17 11 10 51 51 H 0.97005 * 119.99231 * 179.97438 * 22 21 19 52 52 H 1.08004 * 120.10544 * 0.04284 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2834 2.3782 0.0005 5 6 1.8942 3.6168 0.0063 6 6 3.2781 3.7123 0.0010 7 7 3.8919 4.9579 0.0019 8 6 3.0775 6.1757 0.0025 9 6 3.9933 7.4015 0.0041 10 6 3.1429 8.6733 0.0040 11 7 4.0221 9.8502 0.0049 12 6 5.0988 9.7039 -0.9844 13 6 6.0355 10.9111 -0.8974 14 7 5.2684 12.1417 -1.1355 15 6 6.1476 13.3186 -1.1347 16 6 4.1919 12.2878 -0.1459 17 6 3.2549 11.0808 -0.2334 18 6 4.0611 2.5331 0.0004 19 6 5.4690 2.6145 0.0007 20 1 5.9598 3.4826 -0.4140 21 6 6.2299 1.5709 0.5383 22 7 5.6637 0.6791 1.3112 23 14 8.0537 1.4501 0.1531 24 1 8.8259 2.2060 1.1717 25 1 8.4706 0.0249 0.1730 26 1 8.3146 2.0234 -1.1917 27 6 3.4230 1.2792 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 0.2053 2.3131 0.0005 32 1 1.2927 4.5137 0.0109 33 1 4.8598 5.0216 0.0021 34 1 2.4482 6.1916 0.8922 35 1 2.4487 6.1927 -0.8876 36 1 4.6229 7.3857 -0.8856 37 1 4.6218 7.3842 0.8943 38 1 2.5130 8.6892 0.8935 39 1 2.5146 8.6904 -0.8865 40 1 4.6684 9.6489 -1.9844 41 1 5.6603 8.7924 -0.7792 42 1 6.8182 10.8191 -1.6503 43 1 6.4871 10.9503 0.0939 44 1 6.8946 13.2147 -1.9216 45 1 5.5544 14.2154 -1.3136 46 1 6.6461 13.3990 -0.1688 47 1 4.6222 12.3425 0.8541 48 1 3.6309 13.1996 -0.3506 49 1 2.4721 11.1729 0.5196 50 1 2.8036 11.0418 -1.2247 51 1 6.1913 -0.0448 1.6837 52 1 4.0100 0.3726 -0.0017 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161708592.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:05 Heat of formation + Delta-G solvation = -20.783800 kcal Electronic energy + Delta-G solvation = -28337.261190 eV Core-core repulsion = 24528.883870 eV Total energy + Delta-G solvation = -3808.377320 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -40.49026 -40.31581 -38.75575 -37.27493 -35.90250 -35.00277 -32.69438 -31.86613 -31.48805 -29.90156 -28.76744 -27.24482 -26.87041 -25.56554 -24.91971 -24.08043 -22.79820 -21.71337 -21.64184 -20.69223 -19.40070 -18.00070 -17.49269 -17.36649 -16.73566 -16.61784 -16.33766 -16.23868 -16.06409 -15.90078 -15.71227 -15.62141 -15.16432 -14.97615 -14.82013 -14.30198 -13.93903 -13.81329 -13.46599 -13.37999 -13.25415 -13.09691 -12.99864 -12.81299 -12.73440 -12.59494 -12.43333 -12.37529 -12.25632 -12.12469 -12.04981 -11.81425 -11.71130 -11.63526 -11.43963 -11.13055 -10.93079 -9.99075 -9.43321 -9.29366 -9.25436 -8.56500 -7.73877 -6.08664 1.01101 1.34654 1.40880 1.51902 1.56614 2.24956 2.74365 2.82594 2.92663 2.97301 3.15120 3.79993 3.87061 3.97694 4.04757 4.10219 4.20012 4.25499 4.36788 4.39864 4.44353 4.51147 4.51534 4.55545 4.59585 4.61185 4.65271 4.67012 4.68917 4.77230 4.80893 4.83345 4.89689 4.99734 5.01921 5.04409 5.10108 5.16103 5.22632 5.24946 5.32654 5.61780 5.76923 5.85243 5.93762 5.95796 6.03464 6.13406 6.15943 6.23019 6.40879 6.83094 6.99692 7.05673 7.27489 7.37827 8.45527 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.011699 B = 0.002476 C = 0.002076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2392.844039 B =11304.878181 C =13485.980128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.356 6.356 3 C 0.078 3.922 4 C -0.271 4.271 5 C -0.158 4.158 6 C 0.092 3.908 7 N -0.748 5.748 8 C 0.141 3.859 9 C -0.118 4.118 10 C 0.068 3.932 11 N -0.548 5.548 12 C 0.050 3.950 13 C 0.059 3.941 14 N -0.559 5.559 15 C 0.026 3.974 16 C 0.059 3.941 17 C 0.056 3.944 18 C 0.065 3.935 19 C -0.485 4.485 20 H 0.082 0.918 21 C 0.031 3.969 22 N -0.832 5.832 23 Si 0.978 3.022 24 H -0.262 1.262 25 H -0.275 1.275 26 H -0.257 1.257 27 C -0.203 4.203 28 H 0.050 0.950 29 H 0.054 0.946 30 H 0.113 0.887 31 H 0.122 0.878 32 H 0.119 0.881 33 H 0.393 0.607 34 H 0.046 0.954 35 H 0.047 0.953 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.084 0.916 39 H 0.039 0.961 40 H 0.035 0.965 41 H 0.085 0.915 42 H 0.087 0.913 43 H 0.035 0.965 44 H 0.073 0.927 45 H 0.078 0.922 46 H 0.026 0.974 47 H 0.036 0.964 48 H 0.094 0.906 49 H 0.091 0.909 50 H 0.037 0.963 51 H 0.282 0.718 52 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.491 20.173 -3.088 20.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.272 6.272 3 C 0.033 3.967 4 C -0.291 4.291 5 C -0.181 4.181 6 C -0.008 4.008 7 N -0.383 5.383 8 C 0.016 3.984 9 C -0.156 4.156 10 C -0.060 4.060 11 N -0.274 5.274 12 C -0.078 4.078 13 C -0.069 4.069 14 N -0.284 5.284 15 C -0.122 4.122 16 C -0.069 4.069 17 C -0.072 4.072 18 C 0.060 3.940 19 C -0.516 4.516 20 H 0.100 0.900 21 C -0.182 4.182 22 N -0.459 5.459 23 Si 0.799 3.201 24 H -0.187 1.187 25 H -0.200 1.200 26 H -0.181 1.181 27 C -0.225 4.225 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.131 0.869 31 H 0.140 0.860 32 H 0.137 0.863 33 H 0.228 0.772 34 H 0.064 0.936 35 H 0.065 0.935 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.102 0.898 39 H 0.058 0.942 40 H 0.053 0.947 41 H 0.104 0.896 42 H 0.105 0.895 43 H 0.053 0.947 44 H 0.092 0.908 45 H 0.097 0.903 46 H 0.044 0.956 47 H 0.054 0.946 48 H 0.112 0.888 49 H 0.109 0.891 50 H 0.055 0.945 51 H 0.092 0.908 52 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -2.518 19.930 -2.940 20.303 hybrid contribution 0.836 -0.475 0.113 0.968 sum -1.682 19.455 -2.828 19.731 Atomic orbital electron populations 1.23065 0.78119 1.04179 1.01178 1.85948 1.22332 1.28540 1.90339 1.18903 0.92132 0.83812 1.01865 1.20514 0.98336 0.91544 1.18696 1.20111 0.92148 0.96754 1.09129 1.18018 0.91625 0.85926 1.05264 1.44003 1.07673 1.01503 1.85127 1.21054 0.93782 0.83666 0.99919 1.21734 0.98432 0.92585 1.02865 1.21931 0.94322 0.88188 1.01544 1.62237 1.12840 1.02728 1.49558 1.22275 0.93493 0.98511 0.93483 1.22159 0.95510 0.89055 1.00214 1.62199 1.13244 1.03265 1.49721 1.22384 0.96660 0.92601 1.00574 1.22181 0.93032 0.98274 0.93447 1.22210 0.95741 0.88776 1.00454 1.17317 0.93715 0.89434 0.93531 1.19378 0.91122 1.04675 1.36382 0.90048 1.26692 1.05311 0.94060 0.92180 1.69968 1.40002 1.12478 1.23428 0.85270 0.76661 0.78257 0.79884 1.18691 1.19992 1.18073 1.20254 0.90461 0.98069 1.13683 0.93125 0.92719 0.86899 0.86025 0.86312 0.77234 0.93608 0.93473 0.91161 0.91278 0.89799 0.94234 0.94714 0.89649 0.89483 0.94656 0.90808 0.90338 0.95574 0.94601 0.88806 0.89105 0.94456 0.90755 0.88541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.95 9.81 113.37 1.11 2.06 16 2 O -0.36 -16.53 10.49 -93.09 -0.98 -17.51 16 3 C 0.08 3.97 6.67 22.46 0.15 4.12 16 4 C -0.27 -12.26 9.03 22.52 0.20 -12.06 16 5 C -0.16 -7.02 9.28 22.35 0.21 -6.81 16 6 C 0.09 4.42 6.68 38.96 0.26 4.68 16 7 N -0.75 -29.63 5.63 -337.97 -1.90 -31.53 16 8 C 0.14 4.23 4.90 86.38 0.42 4.65 16 9 C -0.12 -2.84 4.59 30.60 0.14 -2.70 16 10 C 0.07 1.39 5.28 86.30 0.46 1.84 16 11 N -0.55 -11.05 4.86 -895.69 -4.35 -15.41 16 12 C 0.05 1.01 4.92 86.31 0.42 1.43 16 13 C 0.06 1.06 5.62 86.31 0.49 1.54 16 14 N -0.56 -9.52 4.97 -921.97 -4.58 -14.10 16 15 C 0.03 0.33 9.60 127.69 1.23 1.55 16 16 C 0.06 0.92 5.62 86.31 0.49 1.40 16 17 C 0.06 0.95 5.58 86.31 0.48 1.44 16 18 C 0.06 3.54 5.57 -21.18 -0.12 3.42 16 19 C -0.49 -25.82 8.48 23.36 0.20 -25.62 16 20 H 0.08 4.03 6.71 -2.91 -0.02 4.01 16 21 C 0.03 1.61 5.16 85.24 0.44 2.05 16 22 N -0.83 -45.91 10.97 21.82 0.24 -45.67 16 23 Si 0.98 39.16 29.59 68.60 2.03 41.19 16 24 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 25 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 26 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 27 C -0.20 -11.57 8.59 22.78 0.20 -11.37 16 28 H 0.05 1.54 7.65 -2.39 -0.02 1.52 16 29 H 0.05 1.62 7.65 -2.39 -0.02 1.60 16 30 H 0.11 2.85 8.14 -2.39 -0.02 2.83 16 31 H 0.12 4.68 6.26 -2.91 -0.02 4.66 16 32 H 0.12 4.51 6.71 -2.91 -0.02 4.49 16 33 H 0.39 15.57 6.70 -92.71 -0.62 14.95 16 34 H 0.05 1.38 7.93 -2.39 -0.02 1.36 16 35 H 0.05 1.39 7.95 -2.39 -0.02 1.37 16 36 H 0.07 1.68 6.26 -2.39 -0.01 1.67 16 37 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.08 1.62 8.14 -2.38 -0.02 1.61 16 39 H 0.04 0.79 8.08 -2.39 -0.02 0.77 16 40 H 0.03 0.74 8.14 -2.38 -0.02 0.72 16 41 H 0.09 1.74 6.00 -2.38 -0.01 1.73 16 42 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 43 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 44 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 45 H 0.08 0.82 8.13 -2.39 -0.02 0.80 16 46 H 0.03 0.33 8.14 -2.39 -0.02 0.31 16 47 H 0.04 0.61 8.14 -2.39 -0.02 0.59 16 48 H 0.09 1.15 8.13 -2.39 -0.02 1.13 16 49 H 0.09 1.32 8.14 -2.38 -0.02 1.30 16 50 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 51 H 0.28 14.28 8.30 -92.70 -0.77 13.51 16 52 H 0.10 5.92 6.23 -2.91 -0.02 5.90 16 Total: -1.00 -65.43 401.46 -2.49 -67.92 By element: Atomic # 1 Polarization: 43.19 SS G_CDS: 0.28 Total: 43.47 kcal Atomic # 6 Polarization: -35.15 SS G_CDS: 6.77 Total: -28.38 kcal Atomic # 7 Polarization: -96.10 SS G_CDS: -10.60 Total: -106.70 kcal Atomic # 8 Polarization: -16.53 SS G_CDS: -0.98 Total: -17.51 kcal Atomic # 14 Polarization: 39.16 SS G_CDS: 2.03 Total: 41.19 kcal Total: -65.43 -2.49 -67.92 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161708592.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.137 kcal (2) G-P(sol) polarization free energy of solvation -65.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds