Wall clock time and date at job start Tue Mar 31 2020 17:15:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47219 * 2 1 4 4 C 1.52996 * 109.47413 * 120.00572 * 2 1 3 5 5 C 1.52997 * 109.47131 * 185.00110 * 4 2 1 6 6 C 1.53006 * 109.47127 * 179.97438 * 5 4 2 7 7 C 1.52997 * 109.47127 * 180.02562 * 6 5 4 8 8 N 1.46496 * 109.47294 * 179.97438 * 7 6 5 9 9 C 1.36935 * 120.00627 * 179.97438 * 8 7 6 10 10 H 1.08012 * 119.99691 * 359.97438 * 9 8 7 11 11 C 1.38805 * 120.00809 * 180.02562 * 9 8 7 12 12 N 1.31623 * 119.99595 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 120.00541 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47128 * 89.99754 * 13 11 9 15 15 H 1.48501 * 109.47310 * 209.99768 * 13 11 9 16 16 H 1.48501 * 109.46818 * 329.99523 * 13 11 9 17 17 N 1.46501 * 109.47013 * 240.00594 * 2 1 3 18 18 C 1.34781 * 120.00231 * 84.99743 * 17 2 1 19 19 O 1.21621 * 119.99562 * 359.97438 * 18 17 2 20 20 C 1.47260 * 120.00100 * 180.02562 * 18 17 2 21 21 C 1.46758 * 126.96552 * 359.68593 * 20 18 17 22 22 C 1.34503 * 106.36239 * 179.88481 * 21 20 18 23 23 N 1.36427 * 109.00933 * 0.37017 * 22 21 20 24 24 C 1.35212 * 109.90200 * 359.76502 * 23 22 21 25 25 C 1.50998 * 124.54837 * 179.97438 * 24 23 22 26 26 C 1.53413 * 108.24144 * 344.26997 * 25 24 23 27 27 C 1.53164 * 109.02667 * 48.50519 * 26 25 24 28 28 C 1.47021 * 126.00954 * 179.76757 * 23 22 21 29 29 H 1.09001 * 109.46843 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46646 * 299.99399 * 1 2 3 31 31 H 1.08992 * 109.47133 * 60.00019 * 1 2 3 32 32 H 1.08996 * 109.47452 * 65.00111 * 4 2 1 33 33 H 1.09001 * 109.46997 * 304.99684 * 4 2 1 34 34 H 1.09001 * 109.47502 * 60.00153 * 5 4 2 35 35 H 1.09001 * 109.47289 * 299.99950 * 5 4 2 36 36 H 1.09001 * 109.47002 * 299.99574 * 6 5 4 37 37 H 1.08993 * 109.46955 * 60.00011 * 6 5 4 38 38 H 1.09001 * 109.47289 * 299.99953 * 7 6 5 39 39 H 1.09004 * 109.47261 * 59.99697 * 7 6 5 40 40 H 0.97006 * 119.99755 * 359.97438 * 8 7 6 41 41 H 0.97000 * 120.00324 * 180.02562 * 12 11 9 42 42 H 0.97003 * 119.99667 * 265.00116 * 17 2 1 43 43 H 1.07998 * 126.82242 * 0.02562 * 21 20 18 44 44 H 1.07998 * 125.49667 * 180.10072 * 22 21 20 45 45 H 1.09008 * 109.70628 * 104.02106 * 25 24 23 46 46 H 1.08996 * 109.71026 * 224.64064 * 25 24 23 47 47 H 1.08996 * 109.56975 * 288.62997 * 26 25 24 48 48 H 1.08997 * 109.53265 * 168.35803 * 26 25 24 49 49 H 1.09002 * 109.46092 * 170.38586 * 27 26 25 50 50 H 1.09004 * 109.45883 * 50.42651 * 27 26 25 51 51 H 1.09001 * 109.56200 * 282.23254 * 28 23 22 52 52 H 1.08997 * 109.56118 * 42.57136 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 3.5649 -0.6133 1.3135 6 6 4.0749 -1.3342 2.5631 7 6 5.5997 -1.2256 2.6278 8 7 6.0880 -1.9152 3.8245 9 6 7.4300 -1.9514 4.0943 10 1 8.1286 -1.4718 3.4246 11 6 7.8928 -2.6053 5.2279 12 7 7.0415 -3.1902 6.0438 13 14 9.7234 -2.6540 5.5963 14 1 10.0928 -1.4793 6.4262 15 1 10.0471 -3.9020 6.3331 16 1 10.4857 -2.6196 4.3223 17 7 2.0183 -0.6905 -1.1963 18 6 2.1470 -0.0181 -2.3572 19 8 1.8573 1.1619 -2.4118 20 6 2.6373 -0.7123 -3.5598 21 6 3.0333 -2.1215 -3.6655 22 6 3.4088 -2.3148 -4.9425 23 7 3.2837 -1.1402 -5.6251 24 6 2.8210 -0.1749 -4.7992 25 6 2.5613 1.2539 -5.2128 26 6 3.2662 1.5017 -6.5527 27 6 2.9216 0.3623 -7.5165 28 6 3.5977 -0.9284 -7.0457 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3632 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.7518 -1.7716 1.2054 33 1 1.6055 -0.2619 2.1369 34 1 3.8533 0.4369 1.3573 35 1 3.9995 -1.0727 0.4257 36 1 3.6403 -0.8743 3.4506 37 1 3.7866 -2.3844 2.5197 38 1 6.0347 -1.6851 1.7403 39 1 5.8876 -0.1752 2.6713 40 1 5.4606 -2.3463 4.4258 41 1 7.3648 -3.6469 6.8362 42 1 2.2490 -1.6317 -1.1527 43 1 3.0229 -2.8577 -2.8755 44 1 3.7577 -3.2481 -5.3592 45 1 1.4890 1.4149 -5.3252 46 1 2.9583 1.9330 -4.4584 47 1 4.3446 1.5342 -6.3973 48 1 2.9284 2.4491 -6.9725 49 1 3.2746 0.6134 -8.5167 50 1 1.8412 0.2193 -7.5382 51 1 4.6769 -0.8421 -7.1720 52 1 3.2262 -1.7696 -7.6309 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171288716.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:15:39 Heat of formation + Delta-G solvation = -11.104914 kcal Electronic energy + Delta-G solvation = -28093.834309 eV Core-core repulsion = 24285.876697 eV Total energy + Delta-G solvation = -3807.957612 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.83426 -39.43585 -36.76450 -36.30761 -35.13422 -33.12937 -32.87781 -31.44151 -30.25580 -29.60294 -27.93867 -27.35012 -24.62546 -24.23961 -23.33315 -21.93966 -21.51368 -20.77525 -20.58717 -20.08957 -18.79916 -17.73766 -16.95078 -16.31212 -16.09677 -15.61635 -14.96960 -14.87740 -14.67936 -14.61035 -14.57087 -14.15201 -13.91553 -13.73294 -13.64574 -13.39448 -13.08146 -13.01732 -12.82635 -12.76203 -12.39253 -12.19716 -11.93811 -11.65855 -11.52697 -11.39365 -11.34135 -11.22463 -11.15935 -10.90362 -10.76296 -10.60512 -10.34612 -10.20647 -9.93155 -9.78781 -9.60670 -9.04717 -8.80700 -8.77454 -8.35234 -6.84660 -5.70601 -2.98613 1.63731 2.22545 2.45817 3.38256 3.47458 3.52064 3.54128 3.56433 4.01644 4.16339 4.27301 4.41506 4.60297 4.67093 4.73227 4.77665 4.85328 4.98238 5.01482 5.11922 5.12340 5.18132 5.27644 5.32342 5.38904 5.47433 5.54772 5.57895 5.61256 5.67523 5.71904 5.73737 5.75108 5.82280 5.88456 5.95311 6.06151 6.08826 6.23475 6.36939 6.40596 6.46505 6.56049 6.56546 6.62895 6.83679 6.98060 6.98348 7.01900 7.65579 7.75687 8.39085 8.48994 9.59497 10.19521 10.54227 11.52582 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.012822 B = 0.002036 C = 0.001850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2183.298622 B =13750.444153 C =15130.754434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.143 3.857 3 H 0.087 0.913 4 C -0.126 4.126 5 C -0.114 4.114 6 C -0.125 4.125 7 C 0.152 3.848 8 N -0.735 5.735 9 C -0.236 4.236 10 H 0.069 0.931 11 C -0.018 4.018 12 N -0.935 5.935 13 Si 0.907 3.093 14 H -0.290 1.290 15 H -0.292 1.292 16 H -0.282 1.282 17 N -0.719 5.719 18 C 0.593 3.407 19 O -0.556 6.556 20 C -0.235 4.235 21 C -0.167 4.167 22 C -0.015 4.015 23 N -0.446 5.446 24 C 0.110 3.890 25 C -0.054 4.054 26 C -0.129 4.129 27 C -0.136 4.136 28 C 0.102 3.898 29 H 0.055 0.945 30 H 0.064 0.936 31 H 0.058 0.942 32 H 0.067 0.933 33 H 0.078 0.922 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.016 0.984 39 H 0.016 0.984 40 H 0.383 0.617 41 H 0.254 0.746 42 H 0.399 0.601 43 H 0.146 0.854 44 H 0.165 0.835 45 H 0.085 0.915 46 H 0.100 0.900 47 H 0.069 0.931 48 H 0.078 0.922 49 H 0.086 0.914 50 H 0.074 0.926 51 H 0.083 0.917 52 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.640 5.177 -29.879 33.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.039 3.961 3 H 0.105 0.895 4 C -0.164 4.164 5 C -0.152 4.152 6 C -0.163 4.163 7 C 0.025 3.975 8 N -0.379 5.379 9 C -0.368 4.368 10 H 0.087 0.913 11 C -0.213 4.213 12 N -0.584 5.584 13 Si 0.739 3.261 14 H -0.218 1.218 15 H -0.218 1.218 16 H -0.208 1.208 17 N -0.369 5.369 18 C 0.383 3.617 19 O -0.436 6.436 20 C -0.245 4.245 21 C -0.191 4.191 22 C -0.141 4.141 23 N -0.123 5.123 24 C -0.007 4.007 25 C -0.092 4.092 26 C -0.167 4.167 27 C -0.174 4.174 28 C -0.019 4.019 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.086 0.914 33 H 0.096 0.904 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.034 0.966 39 H 0.034 0.966 40 H 0.216 0.784 41 H 0.064 0.936 42 H 0.234 0.766 43 H 0.164 0.836 44 H 0.183 0.817 45 H 0.104 0.896 46 H 0.118 0.882 47 H 0.087 0.913 48 H 0.097 0.903 49 H 0.105 0.895 50 H 0.093 0.907 51 H 0.101 0.899 52 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -14.572 6.038 -30.276 34.138 hybrid contribution 1.037 -0.982 0.513 1.517 sum -13.535 5.056 -29.763 33.085 Atomic orbital electron populations 1.22171 0.95642 1.01933 1.02281 1.20987 0.93548 0.97688 0.83924 0.89456 1.21928 0.96828 1.00892 0.96781 1.21514 0.94039 1.01043 0.98591 1.21723 0.97159 1.00260 0.97153 1.20654 0.91110 0.95295 0.90484 1.42397 1.05309 1.65028 1.25160 1.19262 0.83970 1.28195 1.05349 0.91254 1.24750 0.97710 1.01076 0.97779 1.69666 1.32720 1.40947 1.15092 0.86175 0.85141 0.76988 0.77831 1.21751 1.21792 1.20801 1.45860 1.67655 1.14029 1.09392 1.17315 0.76488 0.85719 0.82225 1.90726 1.51783 1.15693 1.85353 1.20002 1.16118 0.94903 0.93444 1.22036 1.05806 0.94996 0.96265 1.21633 1.09569 0.90052 0.92874 1.43933 1.50679 1.08532 1.09169 1.20287 0.99628 0.91498 0.89265 1.20476 1.01702 0.89879 0.97124 1.21730 1.01271 0.98559 0.95095 1.21888 1.01653 0.93748 1.00107 1.22072 1.01295 0.99665 0.78824 0.92626 0.91724 0.92318 0.91447 0.90362 0.92060 0.92020 0.92124 0.92170 0.96595 0.96590 0.78359 0.93594 0.76620 0.83631 0.81735 0.89624 0.88217 0.91262 0.90342 0.89507 0.90691 0.89873 0.89260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.62 9.48 37.16 0.35 -1.27 16 2 C 0.14 1.59 2.57 -67.93 -0.17 1.41 16 3 H 0.09 1.13 7.58 -51.93 -0.39 0.73 16 4 C -0.13 -1.37 4.75 -26.73 -0.13 -1.50 16 5 C -0.11 -1.52 5.10 -26.73 -0.14 -1.66 16 6 C -0.13 -2.09 5.33 -26.73 -0.14 -2.23 16 7 C 0.15 3.25 6.26 -4.05 -0.03 3.23 16 8 N -0.74 -19.65 5.60 -59.91 -0.34 -19.99 16 9 C -0.24 -6.92 9.99 -15.06 -0.15 -7.08 16 10 H 0.07 1.97 7.83 -52.48 -0.41 1.56 16 11 C -0.02 -0.52 5.50 -17.43 -0.10 -0.62 16 12 N -0.94 -29.09 13.06 55.49 0.72 -28.37 16 13 Si 0.91 23.03 29.55 -169.99 -5.02 18.01 16 14 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 15 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 16 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 17 N -0.72 -8.05 4.53 -54.93 -0.25 -8.30 16 18 C 0.59 7.87 7.77 -12.59 -0.10 7.77 16 19 O -0.56 -8.77 15.00 5.26 0.08 -8.69 16 20 C -0.23 -2.79 6.28 -103.48 -0.65 -3.44 16 21 C -0.17 -1.64 10.56 -37.46 -0.40 -2.04 16 22 C -0.02 -0.13 11.40 -16.83 -0.19 -0.32 16 23 N -0.45 -3.76 3.11 -111.93 -0.35 -4.10 16 24 C 0.11 1.16 6.57 -81.64 -0.54 0.62 16 25 C -0.05 -0.49 5.32 -27.52 -0.15 -0.63 16 26 C -0.13 -0.75 5.98 -26.43 -0.16 -0.91 16 27 C -0.14 -0.59 5.92 -26.58 -0.16 -0.74 16 28 C 0.10 0.50 6.90 -3.69 -0.03 0.48 16 29 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.06 0.83 7.75 -51.93 -0.40 0.42 16 36 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 37 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 39 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.38 10.65 7.67 -40.82 -0.31 10.33 16 41 H 0.25 7.61 8.31 -40.82 -0.34 7.27 16 42 H 0.40 3.83 7.73 -40.82 -0.32 3.51 16 43 H 0.15 1.18 7.70 -52.49 -0.40 0.77 16 44 H 0.17 0.91 8.06 -52.49 -0.42 0.49 16 45 H 0.09 0.77 8.14 -51.92 -0.42 0.34 16 46 H 0.10 1.06 7.40 -51.93 -0.38 0.68 16 47 H 0.07 0.43 8.12 -51.93 -0.42 0.01 16 48 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 49 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 50 H 0.07 0.36 8.11 -51.93 -0.42 -0.06 16 51 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 52 H 0.09 0.29 8.14 -51.93 -0.42 -0.14 16 LS Contribution 416.25 15.07 6.27 6.27 Total: -1.00 -35.31 416.25 -11.10 -46.41 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: -9.37 Total: 7.70 kcal Atomic # 6 Polarization: -6.08 SS G_CDS: -2.86 Total: -8.93 kcal Atomic # 7 Polarization: -60.56 SS G_CDS: -0.21 Total: -60.77 kcal Atomic # 8 Polarization: -8.77 SS G_CDS: 0.08 Total: -8.69 kcal Atomic # 14 Polarization: 23.03 SS G_CDS: -5.02 Total: 18.01 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -35.31 -11.10 -46.41 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171288716.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.310 kcal (2) G-P(sol) polarization free energy of solvation -35.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds