Wall clock time and date at job start Tue Mar 31 2020 17:15:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47219 * 2 1 4 4 C 1.52996 * 109.47413 * 120.00572 * 2 1 3 5 5 C 1.52997 * 109.47131 * 185.00110 * 4 2 1 6 6 C 1.53006 * 109.47127 * 179.97438 * 5 4 2 7 7 C 1.52997 * 109.47127 * 180.02562 * 6 5 4 8 8 N 1.46496 * 109.47294 * 179.97438 * 7 6 5 9 9 C 1.36935 * 120.00627 * 179.97438 * 8 7 6 10 10 H 1.08012 * 119.99691 * 359.97438 * 9 8 7 11 11 C 1.38805 * 120.00809 * 180.02562 * 9 8 7 12 12 N 1.31623 * 119.99595 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 120.00541 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47128 * 89.99754 * 13 11 9 15 15 H 1.48501 * 109.47310 * 209.99768 * 13 11 9 16 16 H 1.48501 * 109.46818 * 329.99523 * 13 11 9 17 17 N 1.46501 * 109.47013 * 240.00594 * 2 1 3 18 18 C 1.34781 * 120.00231 * 84.99743 * 17 2 1 19 19 O 1.21621 * 119.99562 * 359.97438 * 18 17 2 20 20 C 1.47260 * 120.00100 * 180.02562 * 18 17 2 21 21 C 1.46758 * 126.96552 * 359.68593 * 20 18 17 22 22 C 1.34503 * 106.36239 * 179.88481 * 21 20 18 23 23 N 1.36427 * 109.00933 * 0.37017 * 22 21 20 24 24 C 1.35212 * 109.90200 * 359.76502 * 23 22 21 25 25 C 1.50998 * 124.54837 * 179.97438 * 24 23 22 26 26 C 1.53413 * 108.24144 * 344.26997 * 25 24 23 27 27 C 1.53164 * 109.02667 * 48.50519 * 26 25 24 28 28 C 1.47021 * 126.00954 * 179.76757 * 23 22 21 29 29 H 1.09001 * 109.46843 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46646 * 299.99399 * 1 2 3 31 31 H 1.08992 * 109.47133 * 60.00019 * 1 2 3 32 32 H 1.08996 * 109.47452 * 65.00111 * 4 2 1 33 33 H 1.09001 * 109.46997 * 304.99684 * 4 2 1 34 34 H 1.09001 * 109.47502 * 60.00153 * 5 4 2 35 35 H 1.09001 * 109.47289 * 299.99950 * 5 4 2 36 36 H 1.09001 * 109.47002 * 299.99574 * 6 5 4 37 37 H 1.08993 * 109.46955 * 60.00011 * 6 5 4 38 38 H 1.09001 * 109.47289 * 299.99953 * 7 6 5 39 39 H 1.09004 * 109.47261 * 59.99697 * 7 6 5 40 40 H 0.97006 * 119.99755 * 359.97438 * 8 7 6 41 41 H 0.97000 * 120.00324 * 180.02562 * 12 11 9 42 42 H 0.97003 * 119.99667 * 265.00116 * 17 2 1 43 43 H 1.07998 * 126.82242 * 0.02562 * 21 20 18 44 44 H 1.07998 * 125.49667 * 180.10072 * 22 21 20 45 45 H 1.09008 * 109.70628 * 104.02106 * 25 24 23 46 46 H 1.08996 * 109.71026 * 224.64064 * 25 24 23 47 47 H 1.08996 * 109.56975 * 288.62997 * 26 25 24 48 48 H 1.08997 * 109.53265 * 168.35803 * 26 25 24 49 49 H 1.09002 * 109.46092 * 170.38586 * 27 26 25 50 50 H 1.09004 * 109.45883 * 50.42651 * 27 26 25 51 51 H 1.09001 * 109.56200 * 282.23254 * 28 23 22 52 52 H 1.08997 * 109.56118 * 42.57136 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 3.5649 -0.6133 1.3135 6 6 4.0749 -1.3342 2.5631 7 6 5.5997 -1.2256 2.6278 8 7 6.0880 -1.9152 3.8245 9 6 7.4300 -1.9514 4.0943 10 1 8.1286 -1.4718 3.4246 11 6 7.8928 -2.6053 5.2279 12 7 7.0415 -3.1902 6.0438 13 14 9.7234 -2.6540 5.5963 14 1 10.0928 -1.4793 6.4262 15 1 10.0471 -3.9020 6.3331 16 1 10.4857 -2.6196 4.3223 17 7 2.0183 -0.6905 -1.1963 18 6 2.1470 -0.0181 -2.3572 19 8 1.8573 1.1619 -2.4118 20 6 2.6373 -0.7123 -3.5598 21 6 3.0333 -2.1215 -3.6655 22 6 3.4088 -2.3148 -4.9425 23 7 3.2837 -1.1402 -5.6251 24 6 2.8210 -0.1749 -4.7992 25 6 2.5613 1.2539 -5.2128 26 6 3.2662 1.5017 -6.5527 27 6 2.9216 0.3623 -7.5165 28 6 3.5977 -0.9284 -7.0457 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3632 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.7518 -1.7716 1.2054 33 1 1.6055 -0.2619 2.1369 34 1 3.8533 0.4369 1.3573 35 1 3.9995 -1.0727 0.4257 36 1 3.6403 -0.8743 3.4506 37 1 3.7866 -2.3844 2.5197 38 1 6.0347 -1.6851 1.7403 39 1 5.8876 -0.1752 2.6713 40 1 5.4606 -2.3463 4.4258 41 1 7.3648 -3.6469 6.8362 42 1 2.2490 -1.6317 -1.1527 43 1 3.0229 -2.8577 -2.8755 44 1 3.7577 -3.2481 -5.3592 45 1 1.4890 1.4149 -5.3252 46 1 2.9583 1.9330 -4.4584 47 1 4.3446 1.5342 -6.3973 48 1 2.9284 2.4491 -6.9725 49 1 3.2746 0.6134 -8.5167 50 1 1.8412 0.2193 -7.5382 51 1 4.6769 -0.8421 -7.1720 52 1 3.2262 -1.7696 -7.6309 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171288716.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:15:38 Heat of formation + Delta-G solvation = -32.065182 kcal Electronic energy + Delta-G solvation = -28094.743214 eV Core-core repulsion = 24285.876697 eV Total energy + Delta-G solvation = -3808.866517 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.50098 -40.39624 -37.95165 -36.83429 -36.76200 -34.72583 -33.57166 -32.88590 -31.65981 -30.24716 -28.82308 -28.58874 -25.95381 -25.15507 -24.35685 -23.39799 -22.10946 -22.03983 -21.67107 -20.94192 -19.45630 -19.11920 -18.45649 -17.25959 -16.75546 -16.68482 -16.36674 -16.18954 -15.74783 -15.39575 -15.25529 -15.23794 -15.12190 -14.80407 -14.58402 -14.54109 -14.27583 -14.10301 -13.97085 -13.70233 -13.22508 -13.03876 -12.94395 -12.88613 -12.83910 -12.49422 -12.43815 -12.26142 -12.15306 -11.98104 -11.88224 -11.86457 -11.79624 -11.74335 -11.48159 -11.37482 -10.94405 -10.79513 -10.01830 -9.47105 -9.09236 -9.01970 -7.96680 -5.26178 0.79439 1.45981 1.48603 1.53886 1.57161 1.87108 2.52036 2.55085 2.63594 3.36200 3.58876 3.62495 3.72778 3.80345 3.86569 4.03300 4.06903 4.09594 4.15662 4.33608 4.36600 4.38269 4.39873 4.44518 4.45495 4.61939 4.66039 4.68765 4.80426 4.83157 4.85981 4.88532 4.94718 4.97442 5.00044 5.01075 5.03925 5.09061 5.14513 5.25561 5.26555 5.29384 5.34530 5.45600 5.46924 5.53279 5.69955 5.84004 6.12430 6.26117 6.38466 6.75594 7.31597 7.43480 8.07936 8.32203 9.26900 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.012822 B = 0.002036 C = 0.001850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2183.298622 B =13750.444153 C =15130.754434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.145 3.855 3 H 0.066 0.934 4 C -0.115 4.115 5 C -0.104 4.104 6 C -0.111 4.111 7 C 0.148 3.852 8 N -0.748 5.748 9 C -0.250 4.250 10 H 0.072 0.928 11 C -0.078 4.078 12 N -0.969 5.969 13 Si 0.977 3.023 14 H -0.286 1.286 15 H -0.291 1.291 16 H -0.270 1.270 17 N -0.711 5.711 18 C 0.586 3.414 19 O -0.592 6.592 20 C -0.269 4.269 21 C -0.185 4.185 22 C -0.010 4.010 23 N -0.443 5.443 24 C 0.096 3.904 25 C -0.054 4.054 26 C -0.124 4.124 27 C -0.132 4.132 28 C 0.094 3.906 29 H 0.067 0.933 30 H 0.077 0.923 31 H 0.040 0.960 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.053 0.947 35 H 0.061 0.939 36 H 0.058 0.942 37 H 0.063 0.937 38 H 0.016 0.984 39 H 0.012 0.988 40 H 0.374 0.626 41 H 0.253 0.747 42 H 0.408 0.592 43 H 0.158 0.842 44 H 0.198 0.802 45 H 0.079 0.921 46 H 0.073 0.927 47 H 0.066 0.934 48 H 0.091 0.909 49 H 0.115 0.885 50 H 0.070 0.930 51 H 0.095 0.905 52 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.236 4.238 -31.860 35.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.041 3.959 3 H 0.084 0.916 4 C -0.153 4.153 5 C -0.142 4.142 6 C -0.149 4.149 7 C 0.022 3.978 8 N -0.391 5.391 9 C -0.382 4.382 10 H 0.090 0.910 11 C -0.270 4.270 12 N -0.620 5.620 13 Si 0.806 3.194 14 H -0.213 1.213 15 H -0.218 1.218 16 H -0.195 1.195 17 N -0.362 5.362 18 C 0.376 3.624 19 O -0.475 6.475 20 C -0.279 4.279 21 C -0.209 4.209 22 C -0.136 4.136 23 N -0.119 5.119 24 C -0.022 4.022 25 C -0.092 4.092 26 C -0.162 4.162 27 C -0.169 4.169 28 C -0.026 4.026 29 H 0.086 0.914 30 H 0.096 0.904 31 H 0.059 0.941 32 H 0.101 0.899 33 H 0.106 0.894 34 H 0.072 0.928 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.082 0.918 38 H 0.034 0.966 39 H 0.030 0.970 40 H 0.206 0.794 41 H 0.061 0.939 42 H 0.244 0.756 43 H 0.175 0.825 44 H 0.215 0.785 45 H 0.097 0.903 46 H 0.092 0.908 47 H 0.085 0.915 48 H 0.109 0.891 49 H 0.133 0.867 50 H 0.089 0.911 51 H 0.114 0.886 52 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -14.167 5.094 -32.298 35.634 hybrid contribution 0.906 -0.667 1.069 1.552 sum -13.261 4.427 -31.229 34.215 Atomic orbital electron populations 1.22101 0.94484 1.02658 1.02075 1.20935 0.94387 0.96611 0.83981 0.91625 1.21831 0.94661 1.01903 0.96898 1.21407 0.95900 1.00051 0.96858 1.21589 0.93719 1.00934 0.98636 1.20844 0.94274 0.94233 0.88443 1.42624 1.04561 1.65425 1.26508 1.19654 0.85308 1.27803 1.05459 0.90961 1.25635 1.02410 1.01158 0.97791 1.69821 1.34715 1.41915 1.15506 0.85087 0.79686 0.76768 0.77897 1.21280 1.21782 1.19475 1.45819 1.67070 1.14350 1.08942 1.17665 0.76118 0.85443 0.83130 1.90693 1.53590 1.17224 1.85996 1.20158 1.17862 0.96298 0.93559 1.22268 1.06678 0.94287 0.97623 1.22170 1.08007 0.90977 0.92460 1.44239 1.49361 1.07940 1.10364 1.20504 0.99742 0.92406 0.89556 1.20421 1.01524 0.88914 0.98301 1.21716 1.00625 1.00127 0.93733 1.21897 1.01459 0.92700 1.00841 1.22430 1.02288 1.00895 0.76942 0.91370 0.90401 0.94052 0.89912 0.89375 0.92770 0.91980 0.92277 0.91819 0.96578 0.96988 0.79371 0.93873 0.75584 0.82471 0.78539 0.90272 0.90832 0.91541 0.89065 0.86720 0.91130 0.88644 0.86850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.01 9.48 71.98 0.68 -2.32 16 2 C 0.15 3.20 2.57 44.99 0.12 3.32 16 3 H 0.07 1.76 7.58 -2.39 -0.02 1.74 16 4 C -0.12 -2.34 4.75 30.59 0.15 -2.20 16 5 C -0.10 -2.71 5.10 30.60 0.16 -2.55 16 6 C -0.11 -3.62 5.33 30.60 0.16 -3.46 16 7 C 0.15 6.33 6.26 86.38 0.54 6.87 16 8 N -0.75 -40.27 5.60 -343.46 -1.92 -42.20 16 9 C -0.25 -14.69 9.99 84.03 0.84 -13.85 16 10 H 0.07 4.10 7.83 -2.90 -0.02 4.07 16 11 C -0.08 -4.62 5.50 84.86 0.47 -4.15 16 12 N -0.97 -60.69 13.06 21.65 0.28 -60.41 16 13 Si 0.98 47.26 29.55 68.60 2.03 49.29 16 14 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 15 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 16 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 17 N -0.71 -16.10 4.53 -445.96 -2.02 -18.12 16 18 C 0.59 16.31 7.77 86.61 0.67 16.99 16 19 O -0.59 -20.04 15.00 -4.10 -0.06 -20.10 16 20 C -0.27 -6.57 6.28 -19.12 -0.12 -6.69 16 21 C -0.18 -3.51 10.56 23.64 0.25 -3.26 16 22 C -0.01 -0.15 11.40 83.12 0.95 0.80 16 23 N -0.44 -6.81 3.11 -508.04 -1.58 -8.39 16 24 C 0.10 2.06 6.57 41.69 0.27 2.33 16 25 C -0.05 -1.02 5.32 30.08 0.16 -0.86 16 26 C -0.12 -1.36 5.98 30.79 0.18 -1.18 16 27 C -0.13 -0.83 5.92 30.69 0.18 -0.65 16 28 C 0.09 0.67 6.90 86.32 0.60 1.26 16 29 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.06 1.62 7.75 -2.39 -0.02 1.60 16 36 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 38 H 0.02 0.69 8.14 -2.39 -0.02 0.68 16 39 H 0.01 0.53 8.14 -2.38 -0.02 0.51 16 40 H 0.37 21.07 7.67 -92.70 -0.71 20.36 16 41 H 0.25 15.21 8.31 -92.71 -0.77 14.44 16 42 H 0.41 7.64 7.73 -92.71 -0.72 6.92 16 43 H 0.16 2.40 7.70 -2.91 -0.02 2.38 16 44 H 0.20 1.52 8.06 -2.91 -0.02 1.50 16 45 H 0.08 1.54 8.14 -2.38 -0.02 1.52 16 46 H 0.07 1.75 7.40 -2.39 -0.02 1.73 16 47 H 0.07 0.77 8.12 -2.39 -0.02 0.75 16 48 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 49 H 0.11 0.14 8.14 -2.39 -0.02 0.12 16 50 H 0.07 0.54 8.11 -2.39 -0.02 0.52 16 51 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 52 H 0.11 0.31 8.14 -2.39 -0.02 0.29 16 Total: -1.00 -77.55 416.25 2.45 -75.10 By element: Atomic # 1 Polarization: 34.94 SS G_CDS: -0.53 Total: 34.41 kcal Atomic # 6 Polarization: -15.85 SS G_CDS: 6.26 Total: -9.59 kcal Atomic # 7 Polarization: -123.87 SS G_CDS: -5.24 Total: -129.11 kcal Atomic # 8 Polarization: -20.04 SS G_CDS: -0.06 Total: -20.10 kcal Atomic # 14 Polarization: 47.26 SS G_CDS: 2.03 Total: 49.29 kcal Total: -77.55 2.45 -75.10 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171288716.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.035 kcal (2) G-P(sol) polarization free energy of solvation -77.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds