Wall clock time and date at job start Tue Mar 31 2020 17:16:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.46875 * 2 1 4 4 C 1.52999 * 109.47524 * 120.00190 * 2 1 3 5 5 C 1.52999 * 109.47222 * 185.00123 * 4 2 1 6 6 C 1.53004 * 109.46735 * 180.02562 * 5 4 2 7 7 C 1.52999 * 109.46735 * 180.02562 * 6 5 4 8 8 N 1.46503 * 109.47164 * 180.02562 * 7 6 5 9 9 C 1.36933 * 120.00033 * 180.02562 * 8 7 6 10 10 H 1.07998 * 120.00460 * 359.97438 * 9 8 7 11 11 C 1.38814 * 119.99809 * 180.02562 * 9 8 7 12 12 N 1.31617 * 119.99962 * 179.97438 * 11 9 8 13 13 Si 1.86796 * 119.99912 * 359.97438 * 11 9 8 14 14 H 1.48501 * 109.47384 * 90.00470 * 13 11 9 15 15 H 1.48509 * 109.47142 * 210.00044 * 13 11 9 16 16 H 1.48492 * 109.47253 * 329.99923 * 13 11 9 17 17 N 1.46499 * 109.47022 * 240.00416 * 2 1 3 18 18 C 1.34784 * 119.99971 * 84.99732 * 17 2 1 19 19 O 1.21274 * 119.99897 * 359.72827 * 18 17 2 20 20 C 1.50695 * 119.99635 * 179.97438 * 18 17 2 21 21 C 1.53002 * 109.47004 * 179.97438 * 20 18 17 22 22 H 1.09006 * 109.47066 * 55.00116 * 21 20 18 23 23 C 1.52999 * 109.47325 * 295.00504 * 21 20 18 24 24 C 1.50695 * 109.47558 * 174.99853 * 21 20 18 25 25 C 1.38659 * 120.78481 * 59.71950 * 24 21 20 26 26 C 1.38202 * 119.15799 * 179.75805 * 25 24 21 27 27 N 1.31873 * 120.76642 * 0.53084 * 26 25 24 28 28 C 1.31864 * 121.72581 * 359.74347 * 27 26 25 29 29 C 1.38204 * 120.76621 * 359.97438 * 28 27 26 30 30 H 1.09005 * 109.47314 * 299.99734 * 1 2 3 31 31 H 1.09001 * 109.47831 * 59.99682 * 1 2 3 32 32 H 1.08996 * 109.47227 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.46897 * 305.00274 * 4 2 1 34 34 H 1.08995 * 109.47110 * 64.99598 * 4 2 1 35 35 H 1.09001 * 109.46785 * 299.99862 * 5 4 2 36 36 H 1.09002 * 109.47226 * 59.99951 * 5 4 2 37 37 H 1.09001 * 109.47302 * 299.99460 * 6 5 4 38 38 H 1.08998 * 109.46952 * 60.00171 * 6 5 4 39 39 H 1.09002 * 109.47308 * 299.99814 * 7 6 5 40 40 H 1.09002 * 109.47226 * 59.99866 * 7 6 5 41 41 H 0.97000 * 119.99816 * 359.97438 * 8 7 6 42 42 H 0.97000 * 120.00267 * 179.97438 * 12 11 9 43 43 H 0.96999 * 119.99984 * 264.99579 * 17 2 1 44 44 H 1.09005 * 109.47403 * 300.00056 * 20 18 17 45 45 H 1.09002 * 109.47422 * 60.00295 * 20 18 17 46 46 H 1.08996 * 109.47531 * 180.02562 * 23 21 20 47 47 H 1.09006 * 109.46731 * 299.99817 * 23 21 20 48 48 H 1.08997 * 109.47332 * 59.99039 * 23 21 20 49 49 H 1.07992 * 120.41703 * 0.02562 * 25 24 21 50 50 H 1.08004 * 119.62021 * 180.25033 * 26 25 24 51 51 H 1.07999 * 119.62036 * 179.97438 * 28 27 26 52 52 H 1.07998 * 120.42183 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5649 -0.6132 1.3136 6 6 4.0749 -1.3351 2.5625 7 6 5.5997 -1.2265 2.6272 8 7 6.0882 -1.9182 3.8227 9 6 7.4301 -1.9538 4.0928 10 1 8.1285 -1.4724 3.4243 11 6 7.8930 -2.6097 5.2253 12 7 9.1829 -2.6443 5.4846 13 14 6.6852 -3.4430 6.3811 14 1 6.4810 -4.8503 5.9531 15 1 7.2268 -3.4199 7.7637 16 1 5.3878 -2.7215 6.3456 17 7 2.0183 -0.6905 -1.1962 18 6 2.1469 -0.0181 -2.3572 19 8 1.8538 1.1574 -2.4128 20 6 2.6498 -0.7283 -3.5875 21 6 2.7005 0.2547 -4.7589 22 1 3.3013 1.1206 -4.4808 23 6 1.2811 0.7089 -5.1053 24 6 3.3178 -0.4215 -5.9558 25 6 2.7427 -1.5580 -6.5038 26 6 3.3343 -2.1480 -7.6047 27 7 4.4376 -1.6484 -8.1265 28 6 5.0148 -0.5725 -7.6283 29 6 4.4773 0.0746 -6.5318 30 1 -0.3634 0.5138 0.8900 31 1 -0.3635 0.5139 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 1.6054 -0.2618 2.1369 34 1 1.7517 -1.7715 1.2055 35 1 3.9994 -1.0727 0.4258 36 1 3.8532 0.4370 1.3572 37 1 3.6404 -0.8760 3.4505 38 1 3.7866 -2.3853 2.5183 39 1 6.0346 -1.6853 1.7393 40 1 5.8876 -0.1762 2.6716 41 1 5.4609 -2.3503 4.4233 42 1 9.5064 -3.1023 6.2761 43 1 2.2490 -1.6317 -1.1527 44 1 3.6491 -1.1201 -3.3980 45 1 1.9776 -1.5506 -3.8326 46 1 1.3172 1.4088 -5.9401 47 1 0.6803 -0.1570 -5.3834 48 1 0.8346 1.1980 -4.2396 49 1 1.8417 -1.9743 -6.0784 50 1 2.8905 -3.0312 -8.0400 51 1 5.9180 -0.1926 -8.0824 52 1 4.9545 0.9556 -6.1286 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171501778.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:16:29 Heat of formation + Delta-G solvation = -21.913581 kcal Electronic energy + Delta-G solvation = -27561.682159 eV Core-core repulsion = 23753.255849 eV Total energy + Delta-G solvation = -3808.426311 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.84945 -40.07258 -37.39032 -36.00986 -35.36716 -33.36048 -31.95893 -31.60832 -31.21073 -30.60189 -28.06403 -27.80485 -24.81496 -24.23023 -23.79671 -22.24633 -21.45007 -20.95454 -20.76089 -20.33624 -17.84415 -17.51220 -16.84586 -16.65089 -16.33594 -15.92681 -15.68808 -15.15018 -14.70344 -14.62588 -14.43757 -14.26867 -13.97466 -13.84512 -13.67635 -13.46486 -13.39631 -13.06556 -12.92524 -12.71830 -12.43498 -12.23797 -11.95857 -11.88341 -11.73132 -11.65571 -11.48767 -11.22578 -11.20275 -10.89946 -10.87813 -10.44750 -10.36698 -10.12029 -10.06539 -9.88393 -9.79333 -9.59357 -9.53168 -9.30563 -8.89525 -7.22891 -5.76942 -3.12276 0.75705 0.85611 2.37416 2.88164 3.36362 3.38905 3.44114 3.44176 4.06506 4.11901 4.21145 4.41439 4.50418 4.58684 4.64203 4.69995 4.71227 4.77066 4.81314 4.87459 4.99414 5.14552 5.15037 5.24280 5.27860 5.29584 5.30913 5.40090 5.45597 5.49666 5.53011 5.54444 5.61906 5.63523 5.69908 5.78471 5.82511 5.94857 5.98798 6.03565 6.04852 6.12557 6.15243 6.30395 6.32659 6.33519 6.75547 6.79416 7.22983 7.60883 7.96834 7.99909 8.42361 9.21706 9.94158 10.14405 11.41606 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.011287 B = 0.001950 C = 0.001728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2480.044499 B =14354.815678 C =16201.274221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.140 3.860 3 H 0.089 0.911 4 C -0.127 4.127 5 C -0.114 4.114 6 C -0.130 4.130 7 C 0.156 3.844 8 N -0.758 5.758 9 C -0.244 4.244 10 H 0.089 0.911 11 C 0.001 3.999 12 N -0.935 5.935 13 Si 0.887 3.113 14 H -0.284 1.284 15 H -0.291 1.291 16 H -0.278 1.278 17 N -0.723 5.723 18 C 0.516 3.484 19 O -0.538 6.538 20 C -0.136 4.136 21 C -0.037 4.037 22 H 0.092 0.908 23 C -0.149 4.149 24 C -0.032 4.032 25 C -0.169 4.169 26 C 0.098 3.902 27 N -0.491 5.491 28 C 0.100 3.900 29 C -0.169 4.169 30 H 0.065 0.935 31 H 0.058 0.942 32 H 0.055 0.945 33 H 0.079 0.921 34 H 0.067 0.933 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.060 0.940 38 H 0.059 0.941 39 H 0.024 0.976 40 H 0.025 0.975 41 H 0.360 0.640 42 H 0.259 0.741 43 H 0.401 0.599 44 H 0.097 0.903 45 H 0.095 0.905 46 H 0.054 0.946 47 H 0.051 0.949 48 H 0.082 0.918 49 H 0.133 0.867 50 H 0.154 0.846 51 H 0.156 0.844 52 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.766 3.962 -24.733 32.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.036 3.964 3 H 0.107 0.893 4 C -0.165 4.165 5 C -0.152 4.152 6 C -0.168 4.168 7 C 0.029 3.971 8 N -0.404 5.404 9 C -0.374 4.374 10 H 0.107 0.893 11 C -0.194 4.194 12 N -0.583 5.583 13 Si 0.717 3.283 14 H -0.211 1.211 15 H -0.217 1.217 16 H -0.204 1.204 17 N -0.375 5.375 18 C 0.302 3.698 19 O -0.415 6.415 20 C -0.176 4.176 21 C -0.056 4.056 22 H 0.110 0.890 23 C -0.206 4.206 24 C -0.040 4.040 25 C -0.189 4.189 26 C -0.058 4.058 27 N -0.200 5.200 28 C -0.056 4.056 29 C -0.188 4.188 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.097 0.903 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.042 0.958 40 H 0.042 0.958 41 H 0.193 0.807 42 H 0.069 0.931 43 H 0.235 0.765 44 H 0.115 0.885 45 H 0.113 0.887 46 H 0.073 0.927 47 H 0.070 0.930 48 H 0.101 0.899 49 H 0.151 0.849 50 H 0.172 0.828 51 H 0.173 0.827 52 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -20.352 4.448 -25.508 32.934 hybrid contribution -0.917 -0.789 1.734 2.115 sum -21.269 3.658 -23.774 32.109 Atomic orbital electron populations 1.22169 0.95416 1.02010 1.02487 1.21033 0.93701 0.97753 0.83901 0.89306 1.21941 0.96823 1.00914 0.96859 1.21508 0.93986 1.01207 0.98488 1.21781 0.97305 1.00264 0.97413 1.20628 0.90752 0.95688 0.90015 1.42739 1.05258 1.66224 1.26146 1.19084 0.82266 1.29201 1.06852 0.89281 1.24699 0.95654 1.00770 0.98285 1.69705 1.11711 1.48246 1.28647 0.86510 0.80915 0.79790 0.81092 1.21092 1.21701 1.20378 1.46154 1.67395 1.14163 1.09794 1.20539 0.77360 0.87348 0.84504 1.90674 1.49914 1.16073 1.84845 1.21759 1.03672 0.99403 0.92795 1.19919 0.98286 0.97332 0.90034 0.88981 1.21960 0.94455 1.01261 1.02898 1.20339 0.93884 0.94131 0.95634 1.22009 1.01747 0.96933 0.98223 1.22771 0.91515 0.98681 0.92840 1.67685 1.09809 1.11693 1.30783 1.22794 0.98746 0.91092 0.92992 1.22140 0.96725 1.01943 0.98029 0.91573 0.92263 0.92560 0.90274 0.91395 0.91970 0.91803 0.92106 0.92179 0.95774 0.95752 0.80740 0.93069 0.76501 0.88480 0.88660 0.92660 0.93022 0.89873 0.84905 0.82832 0.82711 0.84647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.24 9.48 37.16 0.35 -0.88 16 2 C 0.14 1.18 2.57 -67.93 -0.17 1.00 16 3 H 0.09 0.92 7.58 -51.92 -0.39 0.53 16 4 C -0.13 -1.08 4.75 -26.73 -0.13 -1.20 16 5 C -0.11 -1.25 5.10 -26.73 -0.14 -1.38 16 6 C -0.13 -1.86 5.33 -26.73 -0.14 -2.00 16 7 C 0.16 3.02 6.26 -4.04 -0.03 2.99 16 8 N -0.76 -18.40 5.41 -59.91 -0.32 -18.72 16 9 C -0.24 -7.07 10.47 -15.06 -0.16 -7.23 16 10 H 0.09 2.76 8.06 -52.49 -0.42 2.33 16 11 C 0.00 0.04 5.50 -17.43 -0.10 -0.05 16 12 N -0.93 -29.72 13.97 55.49 0.78 -28.95 16 13 Si 0.89 22.27 27.74 -169.99 -4.71 17.55 16 14 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 15 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 16 H -0.28 -6.54 6.52 56.52 0.37 -6.18 16 17 N -0.72 -5.42 4.53 -53.81 -0.24 -5.66 16 18 C 0.52 4.50 7.51 -10.98 -0.08 4.41 16 19 O -0.54 -6.48 13.62 5.56 0.08 -6.41 16 20 C -0.14 -0.85 4.92 -27.88 -0.14 -0.98 16 21 C -0.04 -0.26 2.24 -91.77 -0.21 -0.46 16 22 H 0.09 0.75 7.76 -51.93 -0.40 0.35 16 23 C -0.15 -1.07 8.76 37.16 0.33 -0.74 16 24 C -0.03 -0.22 4.80 -104.32 -0.50 -0.72 16 25 C -0.17 -1.09 8.89 -39.44 -0.35 -1.44 16 26 C 0.10 0.73 11.18 -17.55 -0.20 0.53 16 27 N -0.49 -4.57 10.36 -13.25 -0.14 -4.70 16 28 C 0.10 0.79 11.18 -17.55 -0.20 0.59 16 29 C -0.17 -1.21 9.76 -39.44 -0.39 -1.60 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.66 7.75 -51.93 -0.40 0.26 16 36 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 38 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 39 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.36 8.45 5.53 -40.82 -0.23 8.22 16 42 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 43 H 0.40 2.23 8.60 -40.82 -0.35 1.88 16 44 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.10 0.42 7.65 -51.93 -0.40 0.02 16 46 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 47 H 0.05 0.31 7.50 -51.93 -0.39 -0.08 16 48 H 0.08 0.75 5.94 -51.93 -0.31 0.45 16 49 H 0.13 0.58 7.35 -52.49 -0.39 0.20 16 50 H 0.15 0.77 8.06 -52.48 -0.42 0.34 16 51 H 0.16 0.86 8.06 -52.49 -0.42 0.44 16 52 H 0.14 0.77 8.01 -52.49 -0.42 0.34 16 LS Contribution 418.94 15.07 6.31 6.31 Total: -1.00 -35.25 418.94 -9.68 -44.93 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: -9.19 Total: 4.81 kcal Atomic # 6 Polarization: -6.93 SS G_CDS: -2.24 Total: -9.17 kcal Atomic # 7 Polarization: -58.10 SS G_CDS: 0.07 Total: -58.03 kcal Atomic # 8 Polarization: -6.48 SS G_CDS: 0.08 Total: -6.41 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -4.71 Total: 17.55 kcal Total LS contribution 6.31 Total: 6.31 kcal Total: -35.25 -9.68 -44.93 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171501778.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.017 kcal (2) G-P(sol) polarization free energy of solvation -35.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds