Wall clock time and date at job start Tue Mar 31 2020 17:16:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.46875 * 2 1 4 4 C 1.52999 * 109.47524 * 120.00190 * 2 1 3 5 5 C 1.52999 * 109.47222 * 185.00123 * 4 2 1 6 6 C 1.53004 * 109.46735 * 180.02562 * 5 4 2 7 7 C 1.52999 * 109.46735 * 180.02562 * 6 5 4 8 8 N 1.46503 * 109.47164 * 180.02562 * 7 6 5 9 9 C 1.36933 * 120.00033 * 180.02562 * 8 7 6 10 10 H 1.07998 * 120.00460 * 359.97438 * 9 8 7 11 11 C 1.38814 * 119.99809 * 180.02562 * 9 8 7 12 12 N 1.31617 * 119.99962 * 179.97438 * 11 9 8 13 13 Si 1.86796 * 119.99912 * 359.97438 * 11 9 8 14 14 H 1.48501 * 109.47384 * 90.00470 * 13 11 9 15 15 H 1.48509 * 109.47142 * 210.00044 * 13 11 9 16 16 H 1.48492 * 109.47253 * 329.99923 * 13 11 9 17 17 N 1.46499 * 109.47022 * 240.00416 * 2 1 3 18 18 C 1.34784 * 119.99971 * 84.99732 * 17 2 1 19 19 O 1.21274 * 119.99897 * 359.72827 * 18 17 2 20 20 C 1.50695 * 119.99635 * 179.97438 * 18 17 2 21 21 C 1.53002 * 109.47004 * 179.97438 * 20 18 17 22 22 H 1.09006 * 109.47066 * 55.00116 * 21 20 18 23 23 C 1.52999 * 109.47325 * 295.00504 * 21 20 18 24 24 C 1.50695 * 109.47558 * 174.99853 * 21 20 18 25 25 C 1.38659 * 120.78481 * 59.71950 * 24 21 20 26 26 C 1.38202 * 119.15799 * 179.75805 * 25 24 21 27 27 N 1.31873 * 120.76642 * 0.53084 * 26 25 24 28 28 C 1.31864 * 121.72581 * 359.74347 * 27 26 25 29 29 C 1.38204 * 120.76621 * 359.97438 * 28 27 26 30 30 H 1.09005 * 109.47314 * 299.99734 * 1 2 3 31 31 H 1.09001 * 109.47831 * 59.99682 * 1 2 3 32 32 H 1.08996 * 109.47227 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.46897 * 305.00274 * 4 2 1 34 34 H 1.08995 * 109.47110 * 64.99598 * 4 2 1 35 35 H 1.09001 * 109.46785 * 299.99862 * 5 4 2 36 36 H 1.09002 * 109.47226 * 59.99951 * 5 4 2 37 37 H 1.09001 * 109.47302 * 299.99460 * 6 5 4 38 38 H 1.08998 * 109.46952 * 60.00171 * 6 5 4 39 39 H 1.09002 * 109.47308 * 299.99814 * 7 6 5 40 40 H 1.09002 * 109.47226 * 59.99866 * 7 6 5 41 41 H 0.97000 * 119.99816 * 359.97438 * 8 7 6 42 42 H 0.97000 * 120.00267 * 179.97438 * 12 11 9 43 43 H 0.96999 * 119.99984 * 264.99579 * 17 2 1 44 44 H 1.09005 * 109.47403 * 300.00056 * 20 18 17 45 45 H 1.09002 * 109.47422 * 60.00295 * 20 18 17 46 46 H 1.08996 * 109.47531 * 180.02562 * 23 21 20 47 47 H 1.09006 * 109.46731 * 299.99817 * 23 21 20 48 48 H 1.08997 * 109.47332 * 59.99039 * 23 21 20 49 49 H 1.07992 * 120.41703 * 0.02562 * 25 24 21 50 50 H 1.08004 * 119.62021 * 180.25033 * 26 25 24 51 51 H 1.07999 * 119.62036 * 179.97438 * 28 27 26 52 52 H 1.07998 * 120.42183 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5649 -0.6132 1.3136 6 6 4.0749 -1.3351 2.5625 7 6 5.5997 -1.2265 2.6272 8 7 6.0882 -1.9182 3.8227 9 6 7.4301 -1.9538 4.0928 10 1 8.1285 -1.4724 3.4243 11 6 7.8930 -2.6097 5.2253 12 7 9.1829 -2.6443 5.4846 13 14 6.6852 -3.4430 6.3811 14 1 6.4810 -4.8503 5.9531 15 1 7.2268 -3.4199 7.7637 16 1 5.3878 -2.7215 6.3456 17 7 2.0183 -0.6905 -1.1962 18 6 2.1469 -0.0181 -2.3572 19 8 1.8538 1.1574 -2.4128 20 6 2.6498 -0.7283 -3.5875 21 6 2.7005 0.2547 -4.7589 22 1 3.3013 1.1206 -4.4808 23 6 1.2811 0.7089 -5.1053 24 6 3.3178 -0.4215 -5.9558 25 6 2.7427 -1.5580 -6.5038 26 6 3.3343 -2.1480 -7.6047 27 7 4.4376 -1.6484 -8.1265 28 6 5.0148 -0.5725 -7.6283 29 6 4.4773 0.0746 -6.5318 30 1 -0.3634 0.5138 0.8900 31 1 -0.3635 0.5139 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 1.6054 -0.2618 2.1369 34 1 1.7517 -1.7715 1.2055 35 1 3.9994 -1.0727 0.4258 36 1 3.8532 0.4370 1.3572 37 1 3.6404 -0.8760 3.4505 38 1 3.7866 -2.3853 2.5183 39 1 6.0346 -1.6853 1.7393 40 1 5.8876 -0.1762 2.6716 41 1 5.4609 -2.3503 4.4233 42 1 9.5064 -3.1023 6.2761 43 1 2.2490 -1.6317 -1.1527 44 1 3.6491 -1.1201 -3.3980 45 1 1.9776 -1.5506 -3.8326 46 1 1.3172 1.4088 -5.9401 47 1 0.6803 -0.1570 -5.3834 48 1 0.8346 1.1980 -4.2396 49 1 1.8417 -1.9743 -6.0784 50 1 2.8905 -3.0312 -8.0400 51 1 5.9180 -0.1926 -8.0824 52 1 4.9545 0.9556 -6.1286 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171501778.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:16:28 Heat of formation + Delta-G solvation = -44.258148 kcal Electronic energy + Delta-G solvation = -27562.651092 eV Core-core repulsion = 23753.255849 eV Total energy + Delta-G solvation = -3809.395244 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.42406 -40.70937 -38.23394 -37.12916 -36.39420 -34.76600 -33.27726 -32.32769 -32.06826 -31.52419 -29.07685 -28.60553 -25.81709 -25.28398 -24.33811 -23.57492 -22.47447 -22.10239 -21.49298 -20.93244 -19.62797 -18.42449 -17.48200 -17.21718 -16.97372 -16.64539 -16.47694 -16.33591 -16.13319 -15.82509 -15.26875 -15.03859 -14.88311 -14.79375 -14.51929 -14.38589 -14.23337 -14.15693 -14.03077 -13.65601 -13.38626 -13.01963 -12.96342 -12.92187 -12.73157 -12.49000 -12.41079 -12.29731 -12.26865 -12.04484 -11.88948 -11.77695 -11.75241 -11.49772 -11.42750 -10.98275 -10.74788 -10.46274 -10.36467 -10.04949 -9.98423 -9.32329 -8.04970 -5.39347 0.23978 0.31161 1.36830 1.41690 1.49322 1.72164 2.28339 2.47459 2.90072 3.25891 3.48225 3.53692 3.64559 3.69076 3.89611 3.97286 4.03016 4.08240 4.15752 4.19274 4.24057 4.27128 4.35622 4.41116 4.47337 4.58274 4.64360 4.67047 4.74475 4.78649 4.79014 4.87945 4.92115 4.93181 4.95876 4.98838 5.02792 5.09231 5.14012 5.16925 5.25702 5.33474 5.37242 5.44736 5.50092 5.50980 5.67584 5.72802 5.82194 6.19341 6.64571 7.05945 7.07217 7.35498 7.82136 8.02459 9.16651 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.011287 B = 0.001950 C = 0.001728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2480.044499 B =14354.815678 C =16201.274221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.143 3.857 3 H 0.064 0.936 4 C -0.116 4.116 5 C -0.107 4.107 6 C -0.116 4.116 7 C 0.149 3.851 8 N -0.761 5.761 9 C -0.242 4.242 10 H 0.051 0.949 11 C -0.069 4.069 12 N -0.985 5.985 13 Si 0.963 3.037 14 H -0.274 1.274 15 H -0.295 1.295 16 H -0.249 1.249 17 N -0.716 5.716 18 C 0.512 3.488 19 O -0.576 6.576 20 C -0.130 4.130 21 C -0.032 4.032 22 H 0.074 0.926 23 C -0.143 4.143 24 C -0.036 4.036 25 C -0.165 4.165 26 C 0.087 3.913 27 N -0.521 5.521 28 C 0.087 3.913 29 C -0.177 4.177 30 H 0.072 0.928 31 H 0.043 0.957 32 H 0.070 0.930 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.066 0.934 36 H 0.052 0.948 37 H 0.063 0.937 38 H 0.072 0.928 39 H 0.021 0.979 40 H 0.014 0.986 41 H 0.367 0.633 42 H 0.259 0.741 43 H 0.413 0.587 44 H 0.105 0.895 45 H 0.121 0.879 46 H 0.050 0.950 47 H 0.067 0.933 48 H 0.063 0.937 49 H 0.158 0.842 50 H 0.175 0.825 51 H 0.169 0.831 52 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.726 2.275 -24.577 34.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.038 3.962 3 H 0.083 0.917 4 C -0.154 4.154 5 C -0.145 4.145 6 C -0.154 4.154 7 C 0.023 3.977 8 N -0.407 5.407 9 C -0.373 4.373 10 H 0.069 0.931 11 C -0.260 4.260 12 N -0.635 5.635 13 Si 0.789 3.211 14 H -0.200 1.200 15 H -0.222 1.222 16 H -0.174 1.174 17 N -0.368 5.368 18 C 0.300 3.700 19 O -0.456 6.456 20 C -0.169 4.169 21 C -0.051 4.051 22 H 0.093 0.907 23 C -0.200 4.200 24 C -0.044 4.044 25 C -0.184 4.184 26 C -0.069 4.069 27 N -0.231 5.231 28 C -0.069 4.069 29 C -0.197 4.197 30 H 0.091 0.909 31 H 0.062 0.938 32 H 0.089 0.911 33 H 0.103 0.897 34 H 0.104 0.896 35 H 0.085 0.915 36 H 0.071 0.929 37 H 0.082 0.918 38 H 0.090 0.910 39 H 0.039 0.961 40 H 0.032 0.968 41 H 0.201 0.799 42 H 0.068 0.932 43 H 0.250 0.750 44 H 0.123 0.877 45 H 0.139 0.861 46 H 0.069 0.931 47 H 0.086 0.914 48 H 0.082 0.918 49 H 0.175 0.825 50 H 0.192 0.808 51 H 0.186 0.814 52 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -23.349 2.755 -25.381 34.597 hybrid contribution 0.075 -0.187 1.603 1.615 sum -23.274 2.569 -23.778 33.371 Atomic orbital electron populations 1.22100 0.94502 1.02760 1.02073 1.20921 0.94327 0.96641 0.84270 0.91739 1.21841 0.94523 1.02082 0.96977 1.21430 0.95939 1.00098 0.97042 1.21669 0.93081 1.01554 0.99116 1.20857 0.94501 0.94339 0.87961 1.42757 1.03475 1.66685 1.27748 1.19061 0.84043 1.28085 1.06073 0.93060 1.25640 0.97774 1.02118 1.00504 1.69903 1.14298 1.49797 1.29529 0.85294 0.79176 0.78913 0.77700 1.20012 1.22157 1.17370 1.46106 1.66770 1.14703 1.09231 1.20970 0.76717 0.86952 0.85343 1.90668 1.51655 1.17847 1.85465 1.21761 1.04578 0.99475 0.91130 1.19812 0.97802 0.97018 0.90424 0.90720 1.21887 0.94688 1.01663 1.01806 1.20399 0.93927 0.94493 0.95626 1.22235 1.02199 0.96317 0.97663 1.23190 0.91182 0.99359 0.93189 1.67687 1.10974 1.12537 1.31855 1.23071 0.99401 0.91092 0.93371 1.22314 0.97062 1.02306 0.98009 0.90927 0.93800 0.91137 0.89667 0.89556 0.91522 0.92884 0.91791 0.90956 0.96066 0.96767 0.79922 0.93240 0.75043 0.87695 0.86062 0.93098 0.91390 0.91828 0.82467 0.80829 0.81404 0.83786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.05 9.48 71.98 0.68 -1.36 16 2 C 0.14 2.14 2.57 44.99 0.12 2.25 16 3 H 0.06 1.31 7.58 -2.38 -0.02 1.29 16 4 C -0.12 -1.60 4.75 30.59 0.15 -1.46 16 5 C -0.11 -2.10 5.10 30.60 0.16 -1.94 16 6 C -0.12 -3.01 5.33 30.60 0.16 -2.85 16 7 C 0.15 5.63 6.26 86.38 0.54 6.17 16 8 N -0.76 -36.02 5.41 -343.45 -1.86 -37.87 16 9 C -0.24 -14.16 10.47 84.03 0.88 -13.28 16 10 H 0.05 3.31 8.06 -2.91 -0.02 3.29 16 11 C -0.07 -4.13 5.50 84.86 0.47 -3.67 16 12 N -0.98 -63.95 13.97 21.65 0.30 -63.65 16 13 Si 0.96 45.29 27.74 68.60 1.90 47.20 16 14 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 15 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 16 H -0.25 -10.45 6.52 99.48 0.65 -9.80 16 17 N -0.72 -9.22 4.53 -442.54 -2.00 -11.22 16 18 C 0.51 8.32 7.51 87.65 0.66 8.97 16 19 O -0.58 -13.94 13.62 -3.01 -0.04 -13.99 16 20 C -0.13 -1.36 4.92 29.85 0.15 -1.21 16 21 C -0.03 -0.41 2.24 -11.54 -0.03 -0.44 16 22 H 0.07 1.24 7.76 -2.38 -0.02 1.22 16 23 C -0.14 -1.94 8.76 71.98 0.63 -1.31 16 24 C -0.04 -0.47 4.80 -19.67 -0.09 -0.56 16 25 C -0.16 -1.78 8.89 22.36 0.20 -1.58 16 26 C 0.09 1.16 11.18 84.68 0.95 2.11 16 27 N -0.52 -9.39 10.36 -195.84 -2.03 -11.42 16 28 C 0.09 1.34 11.18 84.68 0.95 2.28 16 29 C -0.18 -2.48 9.76 22.36 0.22 -2.26 16 30 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 31 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.09 0.93 8.14 -2.39 -0.02 0.92 16 35 H 0.07 1.25 7.75 -2.39 -0.02 1.24 16 36 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 41 H 0.37 16.21 5.53 -92.71 -0.51 15.70 16 42 H 0.26 15.90 8.31 -92.71 -0.77 15.13 16 43 H 0.41 3.29 8.60 -92.71 -0.80 2.49 16 44 H 0.10 0.98 8.14 -2.38 -0.02 0.96 16 45 H 0.12 0.65 7.65 -2.39 -0.02 0.63 16 46 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 47 H 0.07 0.68 7.50 -2.38 -0.02 0.66 16 48 H 0.06 1.15 5.94 -2.39 -0.01 1.14 16 49 H 0.16 0.84 7.35 -2.91 -0.02 0.82 16 50 H 0.17 1.40 8.06 -2.91 -0.02 1.38 16 51 H 0.17 1.87 8.06 -2.91 -0.02 1.85 16 52 H 0.14 1.63 8.01 -2.91 -0.02 1.61 16 Total: -1.00 -78.31 418.94 2.58 -75.73 By element: Atomic # 1 Polarization: 25.84 SS G_CDS: -0.47 Total: 25.37 kcal Atomic # 6 Polarization: -16.92 SS G_CDS: 6.78 Total: -10.14 kcal Atomic # 7 Polarization: -118.58 SS G_CDS: -5.59 Total: -124.17 kcal Atomic # 8 Polarization: -13.94 SS G_CDS: -0.04 Total: -13.99 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 1.90 Total: 47.20 kcal Total: -78.31 2.58 -75.73 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171501778.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.471 kcal (2) G-P(sol) polarization free energy of solvation -78.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds