Wall clock time and date at job start Tue Mar 31 2020 17:16:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.46908 * 2 1 4 4 C 1.53001 * 109.47434 * 240.00002 * 2 1 3 5 5 C 1.52991 * 109.47279 * 175.00147 * 4 2 1 6 6 C 1.53001 * 109.47279 * 180.02562 * 5 4 2 7 7 C 1.53003 * 109.47028 * 179.97438 * 6 5 4 8 8 N 1.46495 * 109.46957 * 180.02562 * 7 6 5 9 9 C 1.36934 * 120.00378 * 180.02562 * 8 7 6 10 10 H 1.08007 * 119.99622 * 0.02562 * 9 8 7 11 11 C 1.38810 * 120.00503 * 179.97438 * 9 8 7 12 12 N 1.31617 * 120.00292 * 179.97438 * 11 9 8 13 13 Si 1.86802 * 119.99754 * 0.02562 * 11 9 8 14 14 H 1.48490 * 109.47485 * 89.99737 * 13 11 9 15 15 H 1.48505 * 109.46748 * 209.99994 * 13 11 9 16 16 H 1.48497 * 109.46945 * 329.98917 * 13 11 9 17 17 N 1.46504 * 109.46696 * 119.99759 * 2 1 3 18 18 C 1.34776 * 120.00261 * 275.00047 * 17 2 1 19 19 O 1.21284 * 119.99664 * 0.02562 * 18 17 2 20 20 C 1.50698 * 120.00069 * 180.02562 * 18 17 2 21 21 C 1.53003 * 109.46926 * 179.97438 * 20 18 17 22 22 H 1.08999 * 109.46935 * 304.99726 * 21 20 18 23 23 C 1.52995 * 109.46949 * 65.00047 * 21 20 18 24 24 C 1.50703 * 109.46846 * 184.99859 * 21 20 18 25 25 C 1.38655 * 120.78758 * 119.99877 * 24 21 20 26 26 C 1.38197 * 119.15875 * 179.97438 * 25 24 21 27 27 N 1.31874 * 120.76735 * 359.97438 * 26 25 24 28 28 C 1.31868 * 121.72350 * 0.02562 * 27 26 25 29 29 C 1.38198 * 120.76515 * 0.02562 * 28 27 26 30 30 H 1.08998 * 109.47409 * 299.99854 * 1 2 3 31 31 H 1.08995 * 109.46940 * 60.00174 * 1 2 3 32 32 H 1.09006 * 109.46617 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.46831 * 295.00295 * 4 2 1 34 34 H 1.08997 * 109.47050 * 54.99707 * 4 2 1 35 35 H 1.09003 * 109.46946 * 300.00195 * 5 4 2 36 36 H 1.08997 * 109.47438 * 59.99798 * 5 4 2 37 37 H 1.08998 * 109.46682 * 299.99616 * 6 5 4 38 38 H 1.09002 * 109.46998 * 60.00051 * 6 5 4 39 39 H 1.09002 * 109.46828 * 299.99786 * 7 6 5 40 40 H 1.09002 * 109.47073 * 60.00239 * 7 6 5 41 41 H 0.97002 * 119.99815 * 359.97438 * 8 7 6 42 42 H 0.97000 * 120.00215 * 179.97438 * 12 11 9 43 43 H 0.97000 * 119.99661 * 95.00858 * 17 2 1 44 44 H 1.08998 * 109.46960 * 60.00076 * 20 18 17 45 45 H 1.09002 * 109.47153 * 300.00007 * 20 18 17 46 46 H 1.08999 * 109.47564 * 60.00065 * 23 21 20 47 47 H 1.09001 * 109.47059 * 179.97438 * 23 21 20 48 48 H 1.08996 * 109.47243 * 299.99576 * 23 21 20 49 49 H 1.07995 * 120.41666 * 359.96253 * 25 24 21 50 50 H 1.07994 * 119.61835 * 180.02562 * 26 25 24 51 51 H 1.07999 * 119.61410 * 179.97438 * 28 27 26 52 52 H 1.08005 * 120.41632 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5649 -0.6133 -1.3136 6 6 4.0749 -1.3340 -2.5632 7 6 5.5997 -1.2254 -2.6278 8 7 6.0880 -1.9150 -3.8246 9 6 7.4300 -1.9512 -4.0944 10 1 8.1286 -1.4717 -3.4246 11 6 7.8927 -2.6050 -5.2281 12 7 9.1826 -2.6393 -5.4876 13 14 6.6846 -3.4349 -6.3861 14 1 6.2498 -2.4669 -7.4248 15 1 7.3412 -4.5973 -7.0365 16 1 5.5024 -3.9006 -5.6175 17 7 2.0183 -0.6906 1.1963 18 6 2.1470 -0.0183 2.3572 19 8 1.8581 1.1584 2.4117 20 6 2.6497 -0.7285 3.5876 21 6 2.7016 0.2548 4.7586 22 1 3.3031 1.1201 4.4801 23 6 1.2828 0.7101 5.1055 24 6 3.3189 -0.4217 5.9555 25 6 4.4791 0.0737 6.5308 26 6 5.0159 -0.5730 7.6279 27 7 4.4374 -1.6477 8.1273 28 6 3.3336 -2.1465 7.6061 29 6 2.7400 -1.5542 6.5076 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0278 -0.0005 33 1 1.7517 -1.7715 -1.2056 34 1 1.6055 -0.2618 -2.1369 35 1 3.8532 0.4370 -1.3572 36 1 3.9995 -1.0728 -0.4259 37 1 3.7865 -2.3842 -2.5199 38 1 3.6403 -0.8740 -3.4507 39 1 5.8876 -0.1750 -2.6713 40 1 6.0346 -1.6851 -1.7403 41 1 5.4607 -2.3466 -4.4256 42 1 9.5060 -3.0965 -6.2797 43 1 2.2491 -1.6317 1.1527 44 1 3.6491 -1.1203 3.3980 45 1 1.9775 -1.5508 3.8326 46 1 0.6814 -0.1552 5.3841 47 1 1.3197 1.4102 5.9401 48 1 0.8364 1.1993 4.2398 49 1 4.9573 0.9535 6.1265 50 1 5.9191 -0.1933 8.0821 51 1 2.8887 -3.0287 8.0423 52 1 1.8357 -1.9672 6.0856 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171501779.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:16:33 Heat of formation + Delta-G solvation = -21.938683 kcal Electronic energy + Delta-G solvation = -27561.179945 eV Core-core repulsion = 23752.752545 eV Total energy + Delta-G solvation = -3808.427399 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.84930 -40.07200 -37.38984 -36.00987 -35.36686 -33.36073 -31.95922 -31.60939 -31.21097 -30.60198 -28.06434 -27.80488 -24.81615 -24.23037 -23.79619 -22.24697 -21.45031 -20.95426 -20.76106 -20.33575 -17.84371 -17.51191 -16.84576 -16.65169 -16.33682 -15.92613 -15.68758 -15.15131 -14.70081 -14.62625 -14.43834 -14.26956 -13.97496 -13.84487 -13.67585 -13.46492 -13.39701 -13.06376 -12.92794 -12.71979 -12.43469 -12.23797 -11.95370 -11.88432 -11.73067 -11.65725 -11.49338 -11.22614 -11.19713 -10.91472 -10.86602 -10.44724 -10.36565 -10.12190 -10.06695 -9.88235 -9.79457 -9.59334 -9.53221 -9.30578 -8.89519 -7.22879 -5.76934 -3.12286 0.75714 0.85586 2.37410 2.88160 3.36281 3.38998 3.44081 3.44169 4.06454 4.11896 4.21188 4.41426 4.50374 4.58669 4.64198 4.69978 4.71229 4.77084 4.81271 4.87499 4.99405 5.14474 5.14974 5.24299 5.27865 5.29551 5.30925 5.40100 5.45745 5.49339 5.52375 5.55667 5.61704 5.63174 5.69898 5.78589 5.82477 5.94781 5.98765 6.03642 6.04813 6.12563 6.15180 6.30365 6.32657 6.33518 6.75516 6.79451 7.22972 7.60844 7.96825 7.99896 8.42353 9.21710 9.94167 10.14399 11.41607 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.011296 B = 0.001949 C = 0.001727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2478.210574 B =14359.862978 C =16205.358714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.140 3.860 3 H 0.089 0.911 4 C -0.127 4.127 5 C -0.114 4.114 6 C -0.130 4.130 7 C 0.156 3.844 8 N -0.758 5.758 9 C -0.244 4.244 10 H 0.089 0.911 11 C 0.002 3.998 12 N -0.935 5.935 13 Si 0.887 3.113 14 H -0.284 1.284 15 H -0.291 1.291 16 H -0.278 1.278 17 N -0.723 5.723 18 C 0.516 3.484 19 O -0.538 6.538 20 C -0.136 4.136 21 C -0.037 4.037 22 H 0.092 0.908 23 C -0.149 4.149 24 C -0.032 4.032 25 C -0.169 4.169 26 C 0.100 3.900 27 N -0.491 5.491 28 C 0.099 3.901 29 C -0.169 4.169 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.055 0.945 33 H 0.067 0.933 34 H 0.079 0.921 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.059 0.941 38 H 0.060 0.940 39 H 0.025 0.975 40 H 0.024 0.976 41 H 0.360 0.640 42 H 0.259 0.741 43 H 0.401 0.599 44 H 0.097 0.903 45 H 0.095 0.905 46 H 0.051 0.949 47 H 0.054 0.946 48 H 0.082 0.918 49 H 0.136 0.864 50 H 0.156 0.844 51 H 0.154 0.846 52 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.773 3.950 24.742 32.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.036 3.964 3 H 0.107 0.893 4 C -0.165 4.165 5 C -0.152 4.152 6 C -0.168 4.168 7 C 0.029 3.971 8 N -0.404 5.404 9 C -0.374 4.374 10 H 0.107 0.893 11 C -0.194 4.194 12 N -0.583 5.583 13 Si 0.717 3.283 14 H -0.211 1.211 15 H -0.217 1.217 16 H -0.204 1.204 17 N -0.375 5.375 18 C 0.302 3.698 19 O -0.415 6.415 20 C -0.176 4.176 21 C -0.056 4.056 22 H 0.110 0.890 23 C -0.206 4.206 24 C -0.040 4.040 25 C -0.188 4.188 26 C -0.056 4.056 27 N -0.200 5.200 28 C -0.058 4.058 29 C -0.189 4.189 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.074 0.926 33 H 0.086 0.914 34 H 0.097 0.903 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.043 0.957 40 H 0.042 0.958 41 H 0.193 0.807 42 H 0.069 0.931 43 H 0.235 0.765 44 H 0.115 0.885 45 H 0.113 0.887 46 H 0.070 0.930 47 H 0.073 0.927 48 H 0.101 0.899 49 H 0.154 0.846 50 H 0.173 0.827 51 H 0.172 0.828 52 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -20.357 4.434 25.519 32.944 hybrid contribution -0.918 -0.805 -1.725 2.113 sum -21.275 3.630 23.794 32.124 Atomic orbital electron populations 1.22171 0.95416 1.02010 1.02485 1.21035 0.93700 0.97759 0.83900 0.89299 1.21940 0.96823 1.00913 0.96860 1.21505 0.93986 1.01215 0.98483 1.21782 0.97305 1.00269 0.97409 1.20627 0.90752 0.95723 0.89976 1.42738 1.05287 1.66167 1.26176 1.19084 0.82318 1.29313 1.06687 0.89283 1.24697 0.95654 1.00753 0.98297 1.69705 1.11718 1.48317 1.28569 0.86509 0.80854 0.79446 0.81493 1.21071 1.21709 1.20399 1.46153 1.67395 1.14173 1.09779 1.20541 0.77339 0.87366 0.84511 1.90677 1.49999 1.15974 1.84866 1.21758 1.03665 0.99401 0.92801 1.19919 0.98286 0.97323 0.90039 0.88974 1.21958 0.94463 1.01258 1.02893 1.20339 0.93885 0.94149 0.95618 1.22138 0.96741 1.01917 0.98037 1.22794 0.98739 0.91104 0.92992 1.67689 1.09816 1.11719 1.30746 1.22768 0.91516 0.98659 0.92862 1.22007 1.01706 0.96977 0.98223 0.92262 0.91574 0.92559 0.91402 0.90268 0.91799 0.91975 0.92195 0.92091 0.95697 0.95830 0.80740 0.93069 0.76502 0.88481 0.88663 0.93015 0.92658 0.89886 0.84646 0.82712 0.82833 0.84904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.24 9.48 37.16 0.35 -0.88 16 2 C 0.14 1.18 2.57 -67.93 -0.17 1.00 16 3 H 0.09 0.92 7.58 -51.93 -0.39 0.53 16 4 C -0.13 -1.08 4.75 -26.73 -0.13 -1.20 16 5 C -0.11 -1.25 5.10 -26.73 -0.14 -1.38 16 6 C -0.13 -1.86 5.33 -26.73 -0.14 -2.00 16 7 C 0.16 3.02 6.26 -4.04 -0.03 3.00 16 8 N -0.76 -18.40 5.41 -59.91 -0.32 -18.72 16 9 C -0.24 -7.07 10.47 -15.06 -0.16 -7.23 16 10 H 0.09 2.76 8.06 -52.48 -0.42 2.33 16 11 C 0.00 0.05 5.50 -17.43 -0.10 -0.05 16 12 N -0.93 -29.72 13.97 55.49 0.78 -28.95 16 13 Si 0.89 22.27 27.74 -169.99 -4.71 17.55 16 14 H -0.28 -7.07 7.11 56.52 0.40 -6.66 16 15 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 16 H -0.28 -6.53 6.52 56.52 0.37 -6.16 16 17 N -0.72 -5.43 4.53 -53.80 -0.24 -5.67 16 18 C 0.52 4.50 7.51 -10.99 -0.08 4.42 16 19 O -0.54 -6.49 13.63 5.55 0.08 -6.42 16 20 C -0.14 -0.85 4.93 -27.88 -0.14 -0.98 16 21 C -0.04 -0.26 2.24 -91.77 -0.21 -0.46 16 22 H 0.09 0.75 7.76 -51.93 -0.40 0.35 16 23 C -0.15 -1.07 8.76 37.15 0.33 -0.74 16 24 C -0.03 -0.22 4.80 -104.32 -0.50 -0.72 16 25 C -0.17 -1.21 9.76 -39.44 -0.39 -1.60 16 26 C 0.10 0.79 11.18 -17.55 -0.20 0.59 16 27 N -0.49 -4.57 10.36 -13.26 -0.14 -4.70 16 28 C 0.10 0.73 11.18 -17.55 -0.20 0.53 16 29 C -0.17 -1.09 8.89 -39.45 -0.35 -1.44 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.06 0.66 7.75 -51.93 -0.40 0.26 16 37 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.36 8.45 5.53 -40.82 -0.23 8.22 16 42 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 43 H 0.40 2.24 8.60 -40.82 -0.35 1.89 16 44 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.10 0.42 7.67 -51.93 -0.40 0.02 16 46 H 0.05 0.31 7.48 -51.93 -0.39 -0.08 16 47 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 48 H 0.08 0.75 5.95 -51.93 -0.31 0.44 16 49 H 0.14 0.77 8.01 -52.49 -0.42 0.35 16 50 H 0.16 0.86 8.06 -52.49 -0.42 0.44 16 51 H 0.15 0.77 8.06 -52.49 -0.42 0.34 16 52 H 0.13 0.58 7.35 -52.48 -0.39 0.20 16 LS Contribution 418.95 15.07 6.31 6.31 Total: -1.00 -35.25 418.95 -9.68 -44.93 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: -9.19 Total: 4.83 kcal Atomic # 6 Polarization: -6.93 SS G_CDS: -2.24 Total: -9.16 kcal Atomic # 7 Polarization: -58.11 SS G_CDS: 0.07 Total: -58.04 kcal Atomic # 8 Polarization: -6.49 SS G_CDS: 0.08 Total: -6.42 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -4.71 Total: 17.55 kcal Total LS contribution 6.31 Total: 6.31 kcal Total: -35.25 -9.68 -44.93 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171501779.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.992 kcal (2) G-P(sol) polarization free energy of solvation -35.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds