Wall clock time and date at job start Tue Mar 31 2020 17:16:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.46908 * 2 1 4 4 C 1.53001 * 109.47434 * 240.00002 * 2 1 3 5 5 C 1.52991 * 109.47279 * 175.00147 * 4 2 1 6 6 C 1.53001 * 109.47279 * 180.02562 * 5 4 2 7 7 C 1.53003 * 109.47028 * 179.97438 * 6 5 4 8 8 N 1.46495 * 109.46957 * 180.02562 * 7 6 5 9 9 C 1.36934 * 120.00378 * 180.02562 * 8 7 6 10 10 H 1.08007 * 119.99622 * 0.02562 * 9 8 7 11 11 C 1.38810 * 120.00503 * 179.97438 * 9 8 7 12 12 N 1.31617 * 120.00292 * 179.97438 * 11 9 8 13 13 Si 1.86802 * 119.99754 * 0.02562 * 11 9 8 14 14 H 1.48490 * 109.47485 * 89.99737 * 13 11 9 15 15 H 1.48505 * 109.46748 * 209.99994 * 13 11 9 16 16 H 1.48497 * 109.46945 * 329.98917 * 13 11 9 17 17 N 1.46504 * 109.46696 * 119.99759 * 2 1 3 18 18 C 1.34776 * 120.00261 * 275.00047 * 17 2 1 19 19 O 1.21284 * 119.99664 * 0.02562 * 18 17 2 20 20 C 1.50698 * 120.00069 * 180.02562 * 18 17 2 21 21 C 1.53003 * 109.46926 * 179.97438 * 20 18 17 22 22 H 1.08999 * 109.46935 * 304.99726 * 21 20 18 23 23 C 1.52995 * 109.46949 * 65.00047 * 21 20 18 24 24 C 1.50703 * 109.46846 * 184.99859 * 21 20 18 25 25 C 1.38655 * 120.78758 * 119.99877 * 24 21 20 26 26 C 1.38197 * 119.15875 * 179.97438 * 25 24 21 27 27 N 1.31874 * 120.76735 * 359.97438 * 26 25 24 28 28 C 1.31868 * 121.72350 * 0.02562 * 27 26 25 29 29 C 1.38198 * 120.76515 * 0.02562 * 28 27 26 30 30 H 1.08998 * 109.47409 * 299.99854 * 1 2 3 31 31 H 1.08995 * 109.46940 * 60.00174 * 1 2 3 32 32 H 1.09006 * 109.46617 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.46831 * 295.00295 * 4 2 1 34 34 H 1.08997 * 109.47050 * 54.99707 * 4 2 1 35 35 H 1.09003 * 109.46946 * 300.00195 * 5 4 2 36 36 H 1.08997 * 109.47438 * 59.99798 * 5 4 2 37 37 H 1.08998 * 109.46682 * 299.99616 * 6 5 4 38 38 H 1.09002 * 109.46998 * 60.00051 * 6 5 4 39 39 H 1.09002 * 109.46828 * 299.99786 * 7 6 5 40 40 H 1.09002 * 109.47073 * 60.00239 * 7 6 5 41 41 H 0.97002 * 119.99815 * 359.97438 * 8 7 6 42 42 H 0.97000 * 120.00215 * 179.97438 * 12 11 9 43 43 H 0.97000 * 119.99661 * 95.00858 * 17 2 1 44 44 H 1.08998 * 109.46960 * 60.00076 * 20 18 17 45 45 H 1.09002 * 109.47153 * 300.00007 * 20 18 17 46 46 H 1.08999 * 109.47564 * 60.00065 * 23 21 20 47 47 H 1.09001 * 109.47059 * 179.97438 * 23 21 20 48 48 H 1.08996 * 109.47243 * 299.99576 * 23 21 20 49 49 H 1.07995 * 120.41666 * 359.96253 * 25 24 21 50 50 H 1.07994 * 119.61835 * 180.02562 * 26 25 24 51 51 H 1.07999 * 119.61410 * 179.97438 * 28 27 26 52 52 H 1.08005 * 120.41632 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5649 -0.6133 -1.3136 6 6 4.0749 -1.3340 -2.5632 7 6 5.5997 -1.2254 -2.6278 8 7 6.0880 -1.9150 -3.8246 9 6 7.4300 -1.9512 -4.0944 10 1 8.1286 -1.4717 -3.4246 11 6 7.8927 -2.6050 -5.2281 12 7 9.1826 -2.6393 -5.4876 13 14 6.6846 -3.4349 -6.3861 14 1 6.2498 -2.4669 -7.4248 15 1 7.3412 -4.5973 -7.0365 16 1 5.5024 -3.9006 -5.6175 17 7 2.0183 -0.6906 1.1963 18 6 2.1470 -0.0183 2.3572 19 8 1.8581 1.1584 2.4117 20 6 2.6497 -0.7285 3.5876 21 6 2.7016 0.2548 4.7586 22 1 3.3031 1.1201 4.4801 23 6 1.2828 0.7101 5.1055 24 6 3.3189 -0.4217 5.9555 25 6 4.4791 0.0737 6.5308 26 6 5.0159 -0.5730 7.6279 27 7 4.4374 -1.6477 8.1273 28 6 3.3336 -2.1465 7.6061 29 6 2.7400 -1.5542 6.5076 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0278 -0.0005 33 1 1.7517 -1.7715 -1.2056 34 1 1.6055 -0.2618 -2.1369 35 1 3.8532 0.4370 -1.3572 36 1 3.9995 -1.0728 -0.4259 37 1 3.7865 -2.3842 -2.5199 38 1 3.6403 -0.8740 -3.4507 39 1 5.8876 -0.1750 -2.6713 40 1 6.0346 -1.6851 -1.7403 41 1 5.4607 -2.3466 -4.4256 42 1 9.5060 -3.0965 -6.2797 43 1 2.2491 -1.6317 1.1527 44 1 3.6491 -1.1203 3.3980 45 1 1.9775 -1.5508 3.8326 46 1 0.6814 -0.1552 5.3841 47 1 1.3197 1.4102 5.9401 48 1 0.8364 1.1993 4.2398 49 1 4.9573 0.9535 6.1265 50 1 5.9191 -0.1933 8.0821 51 1 2.8887 -3.0287 8.0423 52 1 1.8357 -1.9672 6.0856 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171501779.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:16:32 Heat of formation + Delta-G solvation = -44.281724 kcal Electronic energy + Delta-G solvation = -27562.148812 eV Core-core repulsion = 23752.752545 eV Total energy + Delta-G solvation = -3809.396266 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.42403 -40.70931 -38.23371 -37.12938 -36.39412 -34.76620 -33.27794 -32.32833 -32.06945 -31.52419 -29.07685 -28.60602 -25.81769 -25.28499 -24.33757 -23.57525 -22.47522 -22.10237 -21.49333 -20.93235 -19.62788 -18.42443 -17.48210 -17.21833 -16.97444 -16.64506 -16.47729 -16.33701 -16.13227 -15.82513 -15.26988 -15.03808 -14.87903 -14.79412 -14.52342 -14.39229 -14.23272 -14.14796 -14.03370 -13.65672 -13.38665 -13.01983 -12.96206 -12.92472 -12.73180 -12.50281 -12.42120 -12.27441 -12.25213 -12.06837 -11.88851 -11.76566 -11.75239 -11.50514 -11.42389 -10.98467 -10.74956 -10.46253 -10.36547 -10.05018 -9.98492 -9.32334 -8.04968 -5.39368 0.23970 0.31116 1.36708 1.41756 1.49256 1.72084 2.28299 2.47436 2.90050 3.25940 3.48186 3.53622 3.64544 3.69096 3.89581 3.97212 4.02989 4.08293 4.15741 4.19252 4.24011 4.27112 4.35590 4.41088 4.47303 4.58345 4.64328 4.66979 4.74446 4.78624 4.78982 4.87937 4.92122 4.93168 4.95835 4.98868 5.02822 5.09234 5.14006 5.16898 5.25700 5.33438 5.37174 5.44712 5.50097 5.50979 5.67507 5.72766 5.82163 6.19330 6.64468 7.05951 7.07163 7.35410 7.82130 8.02441 9.16640 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.011296 B = 0.001949 C = 0.001727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2478.210574 B =14359.862978 C =16205.358714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.143 3.857 3 H 0.065 0.935 4 C -0.116 4.116 5 C -0.107 4.107 6 C -0.116 4.116 7 C 0.149 3.851 8 N -0.761 5.761 9 C -0.242 4.242 10 H 0.051 0.949 11 C -0.069 4.069 12 N -0.985 5.985 13 Si 0.963 3.037 14 H -0.277 1.277 15 H -0.294 1.294 16 H -0.247 1.247 17 N -0.716 5.716 18 C 0.512 3.488 19 O -0.576 6.576 20 C -0.130 4.130 21 C -0.032 4.032 22 H 0.074 0.926 23 C -0.143 4.143 24 C -0.036 4.036 25 C -0.177 4.177 26 C 0.087 3.913 27 N -0.521 5.521 28 C 0.087 3.913 29 C -0.165 4.165 30 H 0.043 0.957 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.053 0.947 36 H 0.066 0.934 37 H 0.070 0.930 38 H 0.065 0.935 39 H 0.015 0.985 40 H 0.020 0.980 41 H 0.367 0.633 42 H 0.259 0.741 43 H 0.413 0.587 44 H 0.105 0.895 45 H 0.121 0.879 46 H 0.067 0.933 47 H 0.050 0.950 48 H 0.063 0.937 49 H 0.144 0.856 50 H 0.169 0.831 51 H 0.175 0.825 52 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.741 2.236 24.610 34.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.038 3.962 3 H 0.083 0.917 4 C -0.154 4.154 5 C -0.145 4.145 6 C -0.154 4.154 7 C 0.023 3.977 8 N -0.407 5.407 9 C -0.373 4.373 10 H 0.069 0.931 11 C -0.260 4.260 12 N -0.635 5.635 13 Si 0.789 3.211 14 H -0.203 1.203 15 H -0.221 1.221 16 H -0.172 1.172 17 N -0.368 5.368 18 C 0.300 3.700 19 O -0.456 6.456 20 C -0.169 4.169 21 C -0.051 4.051 22 H 0.093 0.907 23 C -0.200 4.200 24 C -0.044 4.044 25 C -0.197 4.197 26 C -0.069 4.069 27 N -0.231 5.231 28 C -0.069 4.069 29 C -0.184 4.184 30 H 0.062 0.938 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.104 0.896 34 H 0.104 0.896 35 H 0.071 0.929 36 H 0.084 0.916 37 H 0.089 0.911 38 H 0.083 0.917 39 H 0.033 0.967 40 H 0.038 0.962 41 H 0.201 0.799 42 H 0.068 0.932 43 H 0.249 0.751 44 H 0.123 0.877 45 H 0.139 0.861 46 H 0.086 0.914 47 H 0.069 0.931 48 H 0.082 0.918 49 H 0.162 0.838 50 H 0.186 0.814 51 H 0.192 0.808 52 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -23.361 2.715 25.416 34.628 hybrid contribution 0.076 -0.187 -1.605 1.618 sum -23.285 2.527 23.811 33.400 Atomic orbital electron populations 1.22102 0.94497 1.02759 1.02079 1.20924 0.94330 0.96649 0.84265 0.91723 1.21840 0.94524 1.02066 0.96991 1.21428 0.95939 1.00120 0.97024 1.21670 0.93086 1.01494 0.99171 1.20855 0.94499 0.94395 0.87905 1.42755 1.03497 1.66619 1.27792 1.19061 0.84086 1.28215 1.05895 0.93063 1.25639 0.97775 1.02106 1.00512 1.69902 1.14309 1.49850 1.29467 0.85297 0.78973 0.77938 0.78899 1.20292 1.22061 1.17171 1.46106 1.66770 1.14711 1.09222 1.20971 0.76694 0.86970 0.85350 1.90671 1.51740 1.17750 1.85487 1.21760 1.04566 0.99475 0.91140 1.19812 0.97806 0.97007 0.90427 0.90717 1.21885 0.94692 1.01662 1.01802 1.20399 0.93929 0.94509 0.95612 1.22312 0.97078 1.02279 0.98018 1.23071 0.99393 0.91106 0.93369 1.67691 1.10980 1.12563 1.31818 1.23187 0.91182 0.99337 0.93209 1.22232 1.02168 0.96356 0.97658 0.93794 0.90919 0.91142 0.89590 0.89629 0.92853 0.91560 0.91086 0.91656 0.96668 0.96169 0.79921 0.93239 0.75051 0.87704 0.86063 0.91378 0.93096 0.91839 0.83787 0.81405 0.80828 0.82466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.04 9.48 71.98 0.68 -1.36 16 2 C 0.14 2.13 2.57 44.99 0.12 2.25 16 3 H 0.06 1.31 7.58 -2.39 -0.02 1.29 16 4 C -0.12 -1.60 4.75 30.59 0.15 -1.46 16 5 C -0.11 -2.10 5.10 30.59 0.16 -1.94 16 6 C -0.12 -3.01 5.33 30.60 0.16 -2.85 16 7 C 0.15 5.63 6.26 86.38 0.54 6.17 16 8 N -0.76 -36.01 5.41 -343.45 -1.86 -37.87 16 9 C -0.24 -14.16 10.47 84.03 0.88 -13.28 16 10 H 0.05 3.31 8.06 -2.91 -0.02 3.29 16 11 C -0.07 -4.13 5.50 84.86 0.47 -3.66 16 12 N -0.98 -63.96 13.97 21.65 0.30 -63.66 16 13 Si 0.96 45.29 27.74 68.60 1.90 47.19 16 14 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 15 H -0.29 -13.93 7.11 99.48 0.71 -13.23 16 16 H -0.25 -10.30 6.52 99.48 0.65 -9.65 16 17 N -0.72 -9.24 4.53 -442.52 -2.00 -11.24 16 18 C 0.51 8.33 7.51 87.66 0.66 8.98 16 19 O -0.58 -13.96 13.63 -3.04 -0.04 -14.00 16 20 C -0.13 -1.36 4.93 29.85 0.15 -1.21 16 21 C -0.03 -0.41 2.24 -11.54 -0.03 -0.44 16 22 H 0.07 1.24 7.76 -2.39 -0.02 1.22 16 23 C -0.14 -1.94 8.76 71.98 0.63 -1.31 16 24 C -0.04 -0.47 4.80 -19.67 -0.09 -0.56 16 25 C -0.18 -2.48 9.76 22.36 0.22 -2.26 16 26 C 0.09 1.34 11.18 84.68 0.95 2.28 16 27 N -0.52 -9.39 10.36 -195.86 -2.03 -11.42 16 28 C 0.09 1.16 11.18 84.68 0.95 2.11 16 29 C -0.16 -1.78 8.89 22.36 0.20 -1.58 16 30 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 33 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.07 1.25 7.75 -2.39 -0.02 1.23 16 37 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.02 0.60 8.14 -2.39 -0.02 0.59 16 40 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.37 16.21 5.53 -92.71 -0.51 15.69 16 42 H 0.26 15.90 8.31 -92.71 -0.77 15.13 16 43 H 0.41 3.31 8.60 -92.71 -0.80 2.51 16 44 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 45 H 0.12 0.65 7.67 -2.39 -0.02 0.63 16 46 H 0.07 0.67 7.48 -2.39 -0.02 0.66 16 47 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 48 H 0.06 1.15 5.95 -2.39 -0.01 1.13 16 49 H 0.14 1.63 8.01 -2.91 -0.02 1.61 16 50 H 0.17 1.87 8.06 -2.91 -0.02 1.85 16 51 H 0.17 1.40 8.06 -2.91 -0.02 1.38 16 52 H 0.16 0.84 7.35 -2.91 -0.02 0.82 16 Total: -1.00 -78.31 418.95 2.58 -75.73 By element: Atomic # 1 Polarization: 25.86 SS G_CDS: -0.47 Total: 25.39 kcal Atomic # 6 Polarization: -16.90 SS G_CDS: 6.78 Total: -10.13 kcal Atomic # 7 Polarization: -118.60 SS G_CDS: -5.59 Total: -124.19 kcal Atomic # 8 Polarization: -13.96 SS G_CDS: -0.04 Total: -14.00 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 1.90 Total: 47.19 kcal Total: -78.31 2.58 -75.73 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171501779.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.447 kcal (2) G-P(sol) polarization free energy of solvation -78.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds