Wall clock time and date at job start Tue Mar 31 2020 17:16:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42890 * 1 3 3 C 1.42899 * 113.99973 * 2 1 4 4 C 1.52999 * 109.47199 * 180.02562 * 3 2 1 5 5 N 1.46907 * 109.47135 * 65.00221 * 4 3 2 6 6 C 1.46920 * 110.99691 * 273.06723 * 5 4 3 7 7 C 1.51619 * 111.08585 * 323.81405 * 6 5 4 8 8 N 1.45686 * 114.05795 * 292.58577 * 7 6 5 9 9 C 1.46905 * 110.99863 * 192.60493 * 8 7 6 10 10 H 1.09010 * 109.46810 * 48.54940 * 9 8 7 11 11 C 1.52997 * 109.47615 * 288.54973 * 9 8 7 12 12 C 1.52997 * 109.46865 * 168.54242 * 9 8 7 13 13 C 1.52999 * 109.47726 * 296.15137 * 12 9 8 14 14 C 1.50700 * 109.47128 * 180.02562 * 13 12 9 15 15 H 1.08000 * 120.00271 * 0.02562 * 14 13 12 16 16 C 1.37875 * 119.99618 * 180.02562 * 14 13 12 17 17 N 1.31519 * 119.99965 * 180.02562 * 16 14 13 18 18 Si 1.86796 * 120.00199 * 359.97438 * 16 14 13 19 19 H 1.48504 * 109.47135 * 90.00421 * 18 16 14 20 20 H 1.48505 * 109.47332 * 210.00431 * 18 16 14 21 21 H 1.48495 * 109.47383 * 330.00389 * 18 16 14 22 22 C 1.47060 * 112.28741 * 67.71002 * 8 7 6 23 23 C 1.51366 * 108.32827 * 276.20696 * 22 8 7 24 24 C 1.38143 * 120.13993 * 249.07327 * 23 22 8 25 25 C 1.39014 * 118.02172 * 180.80914 * 24 23 22 26 26 C 1.38072 * 119.22966 * 359.97438 * 25 24 23 27 27 N 1.31973 * 121.11015 * 359.83100 * 26 25 24 28 28 C 1.32671 * 121.32118 * 0.04936 * 27 26 25 29 29 H 1.08999 * 109.47516 * 59.99730 * 1 2 3 30 30 H 1.09000 * 109.47138 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47139 * 299.99948 * 1 2 3 32 32 H 1.08999 * 109.47645 * 60.00254 * 3 2 1 33 33 H 1.09002 * 109.47176 * 299.99676 * 3 2 1 34 34 H 1.08994 * 109.47401 * 305.00254 * 4 3 2 35 35 H 1.09006 * 109.47568 * 184.99754 * 4 3 2 36 36 H 1.08995 * 109.15827 * 203.40281 * 6 5 4 37 37 H 1.08999 * 109.11254 * 84.19604 * 6 5 4 38 38 H 1.09004 * 108.56479 * 171.39899 * 7 6 5 39 39 H 1.09004 * 108.44999 * 53.68713 * 7 6 5 40 40 H 1.08997 * 109.47027 * 59.99505 * 11 9 8 41 41 H 1.08995 * 109.47219 * 180.02562 * 11 9 8 42 42 H 1.09000 * 109.46470 * 299.99887 * 11 9 8 43 43 H 1.09006 * 109.46821 * 56.15360 * 12 9 8 44 44 H 1.09001 * 109.47226 * 176.14688 * 12 9 8 45 45 H 1.08996 * 109.47101 * 300.00081 * 13 12 9 46 46 H 1.09005 * 109.46830 * 59.99900 * 13 12 9 47 47 H 0.96996 * 119.99887 * 179.97438 * 17 16 14 48 48 H 1.08994 * 109.69065 * 35.91895 * 22 8 7 49 49 H 1.09000 * 109.69501 * 156.49925 * 22 8 7 50 50 H 1.07998 * 120.98995 * 0.79228 * 24 23 22 51 51 H 1.07997 * 120.38382 * 179.97438 * 25 24 23 52 52 H 1.08003 * 119.44111 * 179.81977 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3054 0.0000 4 6 3.5353 1.1847 -0.0006 5 7 3.9768 0.5628 -1.2562 6 6 3.9674 -0.9025 -1.1497 7 6 4.3837 -1.3513 0.2374 8 7 5.7773 -1.0731 0.5583 9 6 6.1903 -1.7875 1.7737 10 1 5.8875 -2.8322 1.7017 11 6 5.5248 -1.1466 2.9932 12 6 7.7110 -1.7064 1.9210 13 6 8.3764 -2.4316 0.7495 14 6 9.8743 -2.3521 0.8950 15 1 10.3083 -1.8363 1.7389 16 6 10.6906 -2.9378 -0.0491 17 7 11.9978 -2.8689 0.0781 18 14 9.9400 -3.8305 -1.5082 19 1 9.7486 -2.8745 -2.6284 20 1 10.8476 -4.9238 -1.9401 21 1 8.6271 -4.4030 -1.1163 22 6 6.0453 0.3679 0.6775 23 6 6.2923 0.9224 -0.7091 24 6 7.5545 1.3534 -1.0691 25 6 7.7281 1.8705 -2.3477 26 6 6.6454 1.9335 -3.2022 27 7 5.4539 1.5088 -2.8257 28 6 5.2516 1.0072 -1.6143 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6886 1.8464 0.8900 33 1 1.6885 1.8464 -0.8900 34 1 3.8514 0.5682 0.8408 35 1 3.9785 2.1765 0.0889 36 1 4.6584 -1.3189 -1.8826 37 1 2.9621 -1.2691 -1.3575 38 1 4.2163 -2.4252 0.3196 39 1 3.7518 -0.8457 0.9677 40 1 4.4415 -1.2045 2.8882 41 1 5.8317 -1.6765 3.8949 42 1 5.8276 -0.1020 3.0652 43 1 8.0205 -0.6611 1.9242 44 1 8.0111 -2.1769 2.8573 45 1 8.0670 -3.4767 0.7463 46 1 8.0764 -1.9609 -0.1868 47 1 12.5721 -3.2814 -0.5860 48 1 5.1847 0.8658 1.1242 49 1 6.9262 0.5276 1.2992 50 1 8.3817 1.2907 -0.3776 51 1 8.6985 2.2189 -2.6689 52 1 6.7757 2.3374 -4.1954 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172498936.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:16:58 Heat of formation + Delta-G solvation = 42.334983 kcal Electronic energy + Delta-G solvation = -31179.387860 eV Core-core repulsion = 27373.747576 eV Total energy + Delta-G solvation = -3805.640284 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.38417 -38.81703 -37.98700 -36.53937 -33.52744 -32.80402 -31.78565 -31.22184 -30.43573 -29.38160 -27.27589 -26.26484 -25.99156 -25.30397 -23.47722 -22.81776 -21.91301 -20.90181 -19.97615 -19.14188 -17.56550 -17.06931 -16.63730 -16.43111 -16.20928 -15.91526 -15.36607 -15.20790 -14.99349 -14.73140 -14.26623 -14.13327 -13.61053 -13.36637 -13.19210 -12.97256 -12.75673 -12.62235 -12.48669 -12.41951 -12.33449 -12.09596 -11.94454 -11.59849 -11.56488 -11.44705 -11.26222 -11.01322 -10.94511 -10.81201 -10.36276 -9.91023 -9.80162 -9.71606 -9.61857 -9.52486 -9.44236 -9.04664 -8.68539 -8.45952 -8.37911 -7.80555 -5.98064 -3.94388 1.20439 1.49348 3.38166 3.44813 3.47122 3.51903 3.60777 3.79606 4.15459 4.53273 4.66735 4.75007 4.85700 4.94309 5.01912 5.05529 5.13089 5.16127 5.18075 5.20641 5.23217 5.26232 5.32933 5.38112 5.40798 5.44739 5.49625 5.52274 5.53521 5.58858 5.65661 5.75154 5.80422 5.97576 6.00872 6.09472 6.15467 6.21076 6.35380 6.43136 6.47673 6.61681 6.65264 6.86577 6.97109 7.02136 7.18474 7.34163 7.38190 7.49789 7.66638 7.90316 8.22683 8.61160 9.07549 9.66639 11.15541 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.012291 B = 0.004328 C = 0.003703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2277.626531 B = 6467.280223 C = 7558.601443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.382 6.382 3 C 0.071 3.929 4 C 0.032 3.968 5 N -0.478 5.478 6 C 0.073 3.927 7 C 0.021 3.979 8 N -0.525 5.525 9 C 0.083 3.917 10 H 0.080 0.920 11 C -0.184 4.184 12 C -0.093 4.093 13 C -0.005 4.005 14 C -0.517 4.517 15 H 0.067 0.933 16 C 0.066 3.934 17 N -0.908 5.908 18 Si 0.879 3.121 19 H -0.278 1.278 20 H -0.291 1.291 21 H -0.265 1.265 22 C 0.074 3.926 23 C -0.140 4.140 24 C -0.047 4.047 25 C -0.175 4.175 26 C 0.098 3.902 27 N -0.471 5.471 28 C 0.299 3.701 29 H 0.040 0.960 30 H 0.083 0.917 31 H 0.036 0.964 32 H 0.050 0.950 33 H 0.057 0.943 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.074 0.926 37 H 0.096 0.904 38 H 0.079 0.921 39 H 0.048 0.952 40 H 0.048 0.952 41 H 0.062 0.938 42 H 0.054 0.946 43 H 0.052 0.948 44 H 0.056 0.944 45 H 0.008 0.992 46 H 0.025 0.975 47 H 0.261 0.739 48 H 0.063 0.937 49 H 0.093 0.907 50 H 0.141 0.859 51 H 0.135 0.865 52 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.770 10.269 0.696 23.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.301 6.301 3 C -0.006 4.006 4 C -0.095 4.095 5 N -0.200 5.200 6 C -0.054 4.054 7 C -0.108 4.108 8 N -0.249 5.249 9 C -0.025 4.025 10 H 0.098 0.902 11 C -0.243 4.243 12 C -0.131 4.131 13 C -0.042 4.042 14 C -0.555 4.555 15 H 0.086 0.914 16 C -0.134 4.134 17 N -0.548 5.548 18 Si 0.707 3.293 19 H -0.204 1.204 20 H -0.218 1.218 21 H -0.190 1.190 22 C -0.053 4.053 23 C -0.146 4.146 24 C -0.074 4.074 25 C -0.195 4.195 26 C -0.060 4.060 27 N -0.180 5.180 28 C 0.070 3.930 29 H 0.058 0.942 30 H 0.102 0.898 31 H 0.055 0.945 32 H 0.068 0.932 33 H 0.075 0.925 34 H 0.103 0.897 35 H 0.101 0.899 36 H 0.092 0.908 37 H 0.114 0.886 38 H 0.097 0.903 39 H 0.066 0.934 40 H 0.067 0.933 41 H 0.081 0.919 42 H 0.073 0.927 43 H 0.071 0.929 44 H 0.075 0.925 45 H 0.027 0.973 46 H 0.043 0.957 47 H 0.071 0.929 48 H 0.080 0.920 49 H 0.111 0.889 50 H 0.158 0.842 51 H 0.153 0.847 52 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -21.300 10.042 -0.745 23.560 hybrid contribution 0.489 -0.266 0.891 1.050 sum -20.811 9.776 0.146 22.994 Atomic orbital electron populations 1.22692 0.81521 1.02532 0.99651 1.87920 1.19198 1.27688 1.95316 1.22567 0.92956 0.85010 1.00094 1.22896 0.94124 1.00051 0.92389 1.59522 1.21687 1.07212 1.31542 1.21969 1.02513 0.84591 0.96281 1.22201 0.88683 1.01959 0.97932 1.61205 1.19568 1.07566 1.36562 1.21937 0.97514 0.97313 0.85712 0.90173 1.22521 1.00195 1.01478 1.00107 1.21569 0.90409 1.00734 1.00394 1.19450 0.95489 0.94929 0.94339 1.21220 0.89595 1.34948 1.09725 0.91440 1.24993 0.94634 0.95891 0.97871 1.69926 1.03013 1.45800 1.36045 0.86785 0.79444 0.79777 0.83315 1.20433 1.21757 1.18979 1.21692 1.02339 0.88615 0.92673 1.21206 0.94653 1.00402 0.98296 1.21557 0.96365 0.93171 0.96306 1.22210 1.00607 1.01822 0.94867 1.22575 0.87496 0.96424 0.99499 1.67446 1.24145 1.09852 1.16590 1.19422 0.88904 0.95085 0.89592 0.94171 0.89840 0.94520 0.93188 0.92452 0.89651 0.89942 0.90751 0.88594 0.90293 0.93409 0.93271 0.91928 0.92738 0.92933 0.92489 0.97337 0.95692 0.92948 0.91956 0.88855 0.84160 0.84720 0.82895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 101.05 1.11 1.36 16 2 O -0.38 -3.98 8.76 -35.23 -0.31 -4.29 16 3 C 0.07 0.69 6.28 37.16 0.23 0.92 16 4 C 0.03 0.37 3.50 -3.82 -0.01 0.35 16 5 N -0.48 -6.63 4.76 -174.01 -0.83 -7.46 16 6 C 0.07 1.02 5.33 -4.51 -0.02 0.99 16 7 C 0.02 0.28 4.46 -5.18 -0.02 0.26 16 8 N -0.53 -8.00 3.73 -229.43 -0.85 -8.86 16 9 C 0.08 1.27 2.29 -67.71 -0.15 1.11 16 10 H 0.08 1.26 7.81 -51.92 -0.41 0.85 16 11 C -0.18 -2.26 8.64 37.16 0.32 -1.94 16 12 C -0.09 -1.77 4.55 -26.73 -0.12 -1.89 16 13 C 0.00 -0.11 3.92 -27.88 -0.11 -0.22 16 14 C -0.52 -14.72 9.66 -34.44 -0.33 -15.05 16 15 H 0.07 2.06 7.99 -52.49 -0.42 1.64 16 16 C 0.07 1.96 5.47 -17.82 -0.10 1.87 16 17 N -0.91 -28.30 13.96 55.43 0.77 -27.53 16 18 Si 0.88 22.65 27.47 -169.99 -4.67 17.98 16 19 H -0.28 -7.15 7.11 56.52 0.40 -6.74 16 20 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 21 H -0.27 -6.67 6.54 56.52 0.37 -6.30 16 22 C 0.07 1.05 3.57 -4.56 -0.02 1.03 16 23 C -0.14 -2.15 5.21 -104.35 -0.54 -2.69 16 24 C -0.05 -0.72 9.82 -39.33 -0.39 -1.11 16 25 C -0.18 -2.42 10.12 -39.35 -0.40 -2.81 16 26 C 0.10 1.36 11.16 -17.55 -0.20 1.17 16 27 N -0.47 -7.55 10.43 -12.43 -0.13 -7.68 16 28 C 0.30 4.65 5.27 -154.48 -0.81 3.83 16 29 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.09 0.98 2.61 -51.93 -0.14 0.84 16 35 H 0.08 0.91 7.62 -51.93 -0.40 0.51 16 36 H 0.07 1.21 7.76 -51.93 -0.40 0.80 16 37 H 0.10 1.25 7.18 -51.93 -0.37 0.87 16 38 H 0.08 1.04 7.76 -51.93 -0.40 0.63 16 39 H 0.05 0.59 4.29 -51.93 -0.22 0.37 16 40 H 0.05 0.55 6.98 -51.93 -0.36 0.19 16 41 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.05 0.64 6.78 -51.93 -0.35 0.29 16 43 H 0.05 0.99 6.13 -51.93 -0.32 0.67 16 44 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 45 H 0.01 0.21 7.20 -51.93 -0.37 -0.17 16 46 H 0.02 0.62 7.14 -51.93 -0.37 0.25 16 47 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 48 H 0.06 0.77 4.10 -51.93 -0.21 0.56 16 49 H 0.09 1.37 5.29 -51.93 -0.27 1.09 16 50 H 0.14 2.12 8.02 -52.49 -0.42 1.70 16 51 H 0.13 1.54 8.06 -52.49 -0.42 1.12 16 52 H 0.15 1.64 8.06 -52.48 -0.42 1.22 16 LS Contribution 386.19 15.07 5.82 5.82 Total: -1.00 -33.09 386.19 -10.18 -43.27 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: -8.42 Total: 1.58 kcal Atomic # 6 Polarization: -11.26 SS G_CDS: -1.56 Total: -12.82 kcal Atomic # 7 Polarization: -50.50 SS G_CDS: -1.04 Total: -51.53 kcal Atomic # 8 Polarization: -3.98 SS G_CDS: -0.31 Total: -4.29 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -4.67 Total: 17.98 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.09 -10.18 -43.27 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172498936.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.601 kcal (2) G-P(sol) polarization free energy of solvation -33.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds