Wall clock time and date at job start Tue Mar 31 2020 17:16:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42890 * 1 3 3 C 1.42899 * 113.99973 * 2 1 4 4 C 1.52999 * 109.47199 * 180.02562 * 3 2 1 5 5 N 1.46907 * 109.47135 * 65.00221 * 4 3 2 6 6 C 1.46920 * 110.99691 * 273.06723 * 5 4 3 7 7 C 1.51619 * 111.08585 * 323.81405 * 6 5 4 8 8 N 1.45686 * 114.05795 * 292.58577 * 7 6 5 9 9 C 1.46905 * 110.99863 * 192.60493 * 8 7 6 10 10 H 1.09010 * 109.46810 * 48.54940 * 9 8 7 11 11 C 1.52997 * 109.47615 * 288.54973 * 9 8 7 12 12 C 1.52997 * 109.46865 * 168.54242 * 9 8 7 13 13 C 1.52999 * 109.47726 * 296.15137 * 12 9 8 14 14 C 1.50700 * 109.47128 * 180.02562 * 13 12 9 15 15 H 1.08000 * 120.00271 * 0.02562 * 14 13 12 16 16 C 1.37875 * 119.99618 * 180.02562 * 14 13 12 17 17 N 1.31519 * 119.99965 * 180.02562 * 16 14 13 18 18 Si 1.86796 * 120.00199 * 359.97438 * 16 14 13 19 19 H 1.48504 * 109.47135 * 90.00421 * 18 16 14 20 20 H 1.48505 * 109.47332 * 210.00431 * 18 16 14 21 21 H 1.48495 * 109.47383 * 330.00389 * 18 16 14 22 22 C 1.47060 * 112.28741 * 67.71002 * 8 7 6 23 23 C 1.51366 * 108.32827 * 276.20696 * 22 8 7 24 24 C 1.38143 * 120.13993 * 249.07327 * 23 22 8 25 25 C 1.39014 * 118.02172 * 180.80914 * 24 23 22 26 26 C 1.38072 * 119.22966 * 359.97438 * 25 24 23 27 27 N 1.31973 * 121.11015 * 359.83100 * 26 25 24 28 28 C 1.32671 * 121.32118 * 0.04936 * 27 26 25 29 29 H 1.08999 * 109.47516 * 59.99730 * 1 2 3 30 30 H 1.09000 * 109.47138 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47139 * 299.99948 * 1 2 3 32 32 H 1.08999 * 109.47645 * 60.00254 * 3 2 1 33 33 H 1.09002 * 109.47176 * 299.99676 * 3 2 1 34 34 H 1.08994 * 109.47401 * 305.00254 * 4 3 2 35 35 H 1.09006 * 109.47568 * 184.99754 * 4 3 2 36 36 H 1.08995 * 109.15827 * 203.40281 * 6 5 4 37 37 H 1.08999 * 109.11254 * 84.19604 * 6 5 4 38 38 H 1.09004 * 108.56479 * 171.39899 * 7 6 5 39 39 H 1.09004 * 108.44999 * 53.68713 * 7 6 5 40 40 H 1.08997 * 109.47027 * 59.99505 * 11 9 8 41 41 H 1.08995 * 109.47219 * 180.02562 * 11 9 8 42 42 H 1.09000 * 109.46470 * 299.99887 * 11 9 8 43 43 H 1.09006 * 109.46821 * 56.15360 * 12 9 8 44 44 H 1.09001 * 109.47226 * 176.14688 * 12 9 8 45 45 H 1.08996 * 109.47101 * 300.00081 * 13 12 9 46 46 H 1.09005 * 109.46830 * 59.99900 * 13 12 9 47 47 H 0.96996 * 119.99887 * 179.97438 * 17 16 14 48 48 H 1.08994 * 109.69065 * 35.91895 * 22 8 7 49 49 H 1.09000 * 109.69501 * 156.49925 * 22 8 7 50 50 H 1.07998 * 120.98995 * 0.79228 * 24 23 22 51 51 H 1.07997 * 120.38382 * 179.97438 * 25 24 23 52 52 H 1.08003 * 119.44111 * 179.81977 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3054 0.0000 4 6 3.5353 1.1847 -0.0006 5 7 3.9768 0.5628 -1.2562 6 6 3.9674 -0.9025 -1.1497 7 6 4.3837 -1.3513 0.2374 8 7 5.7773 -1.0731 0.5583 9 6 6.1903 -1.7875 1.7737 10 1 5.8875 -2.8322 1.7017 11 6 5.5248 -1.1466 2.9932 12 6 7.7110 -1.7064 1.9210 13 6 8.3764 -2.4316 0.7495 14 6 9.8743 -2.3521 0.8950 15 1 10.3083 -1.8363 1.7389 16 6 10.6906 -2.9378 -0.0491 17 7 11.9978 -2.8689 0.0781 18 14 9.9400 -3.8305 -1.5082 19 1 9.7486 -2.8745 -2.6284 20 1 10.8476 -4.9238 -1.9401 21 1 8.6271 -4.4030 -1.1163 22 6 6.0453 0.3679 0.6775 23 6 6.2923 0.9224 -0.7091 24 6 7.5545 1.3534 -1.0691 25 6 7.7281 1.8705 -2.3477 26 6 6.6454 1.9335 -3.2022 27 7 5.4539 1.5088 -2.8257 28 6 5.2516 1.0072 -1.6143 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6886 1.8464 0.8900 33 1 1.6885 1.8464 -0.8900 34 1 3.8514 0.5682 0.8408 35 1 3.9785 2.1765 0.0889 36 1 4.6584 -1.3189 -1.8826 37 1 2.9621 -1.2691 -1.3575 38 1 4.2163 -2.4252 0.3196 39 1 3.7518 -0.8457 0.9677 40 1 4.4415 -1.2045 2.8882 41 1 5.8317 -1.6765 3.8949 42 1 5.8276 -0.1020 3.0652 43 1 8.0205 -0.6611 1.9242 44 1 8.0111 -2.1769 2.8573 45 1 8.0670 -3.4767 0.7463 46 1 8.0764 -1.9609 -0.1868 47 1 12.5721 -3.2814 -0.5860 48 1 5.1847 0.8658 1.1242 49 1 6.9262 0.5276 1.2992 50 1 8.3817 1.2907 -0.3776 51 1 8.6985 2.2189 -2.6689 52 1 6.7757 2.3374 -4.1954 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172498936.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:16:57 Heat of formation + Delta-G solvation = 20.201459 kcal Electronic energy + Delta-G solvation = -31180.347642 eV Core-core repulsion = 27373.747576 eV Total energy + Delta-G solvation = -3806.600065 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.46398 -39.90934 -38.85857 -37.58099 -35.37020 -34.14260 -33.32634 -32.28570 -31.61426 -30.69937 -28.20147 -27.29914 -27.00236 -26.83438 -24.50590 -23.86394 -23.16859 -22.53970 -21.19958 -20.36644 -18.82022 -18.53093 -18.08071 -17.44234 -17.13920 -16.93271 -16.34929 -16.23861 -16.16027 -15.93378 -15.78114 -15.31690 -14.91111 -14.59077 -14.43511 -14.32670 -14.24408 -13.89525 -13.77831 -13.55168 -13.31040 -13.15865 -13.03404 -12.91761 -12.85570 -12.73092 -12.47538 -12.16365 -12.07505 -11.91233 -11.87488 -11.65417 -11.47810 -11.29690 -11.11291 -10.74569 -10.71807 -10.67550 -10.48727 -9.78670 -9.45884 -8.89675 -8.28084 -6.28482 0.09958 0.33618 1.32456 1.33758 1.46391 2.35441 2.46147 2.68974 2.93720 3.03250 3.09010 3.63324 3.76209 3.78386 3.95923 4.03124 4.06977 4.09613 4.16559 4.22754 4.29518 4.34513 4.39085 4.41151 4.47446 4.54812 4.56255 4.62084 4.67224 4.68645 4.69073 4.72945 4.77079 4.89603 4.92710 4.94939 5.00638 5.08402 5.11262 5.21737 5.23852 5.32748 5.37049 5.55504 5.59357 5.69281 5.73723 5.88234 6.07109 6.21780 6.28734 6.33714 6.34162 6.79973 7.11544 7.35928 8.88752 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.012291 B = 0.004328 C = 0.003703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2277.626531 B = 6467.280223 C = 7558.601443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.402 6.402 3 C 0.076 3.924 4 C 0.033 3.967 5 N -0.484 5.484 6 C 0.082 3.918 7 C 0.028 3.972 8 N -0.547 5.547 9 C 0.091 3.909 10 H 0.079 0.921 11 C -0.174 4.174 12 C -0.087 4.087 13 C 0.006 3.994 14 C -0.521 4.521 15 H 0.034 0.966 16 C 0.010 3.990 17 N -0.951 5.951 18 Si 0.943 3.057 19 H -0.275 1.275 20 H -0.285 1.285 21 H -0.254 1.254 22 C 0.080 3.920 23 C -0.151 4.151 24 C -0.068 4.068 25 C -0.177 4.177 26 C 0.096 3.904 27 N -0.495 5.495 28 C 0.291 3.709 29 H 0.041 0.959 30 H 0.091 0.909 31 H 0.050 0.950 32 H 0.074 0.926 33 H 0.051 0.949 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.044 0.956 37 H 0.105 0.895 38 H 0.081 0.919 39 H 0.065 0.935 40 H 0.066 0.934 41 H 0.068 0.932 42 H 0.058 0.942 43 H 0.050 0.950 44 H 0.054 0.946 45 H 0.004 0.996 46 H 0.017 0.983 47 H 0.264 0.736 48 H 0.084 0.916 49 H 0.083 0.917 50 H 0.133 0.867 51 H 0.156 0.844 52 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.367 10.503 0.648 25.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.321 6.321 3 C -0.002 4.002 4 C -0.093 4.093 5 N -0.205 5.205 6 C -0.045 4.045 7 C -0.101 4.101 8 N -0.271 5.271 9 C -0.016 4.016 10 H 0.097 0.903 11 C -0.233 4.233 12 C -0.124 4.124 13 C -0.032 4.032 14 C -0.559 4.559 15 H 0.052 0.948 16 C -0.186 4.186 17 N -0.593 5.593 18 Si 0.768 3.232 19 H -0.201 1.201 20 H -0.211 1.211 21 H -0.178 1.178 22 C -0.047 4.047 23 C -0.157 4.157 24 C -0.095 4.095 25 C -0.196 4.196 26 C -0.062 4.062 27 N -0.205 5.205 28 C 0.061 3.939 29 H 0.060 0.940 30 H 0.110 0.890 31 H 0.068 0.932 32 H 0.092 0.908 33 H 0.069 0.931 34 H 0.104 0.896 35 H 0.102 0.898 36 H 0.063 0.937 37 H 0.123 0.877 38 H 0.100 0.900 39 H 0.082 0.918 40 H 0.085 0.915 41 H 0.087 0.913 42 H 0.077 0.923 43 H 0.068 0.932 44 H 0.073 0.927 45 H 0.022 0.978 46 H 0.035 0.965 47 H 0.073 0.927 48 H 0.102 0.898 49 H 0.101 0.899 50 H 0.151 0.849 51 H 0.174 0.826 52 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -23.921 10.281 -0.776 26.048 hybrid contribution 1.346 -0.280 0.914 1.651 sum -22.575 10.000 0.139 24.691 Atomic orbital electron populations 1.22827 0.80094 1.03372 1.00407 1.87874 1.20778 1.27987 1.95484 1.22522 0.91623 0.85074 1.00934 1.22953 0.95406 0.99848 0.91137 1.59628 1.20825 1.07120 1.32972 1.21866 1.02102 0.84748 0.95784 1.22149 0.87755 1.02269 0.97891 1.61100 1.21041 1.08183 1.36822 1.21728 0.94733 0.97782 0.87393 0.90321 1.22398 1.00920 1.01436 0.98523 1.21437 0.93177 0.99762 0.98054 1.19302 0.92663 0.95103 0.96087 1.21584 0.92216 1.33757 1.08353 0.94805 1.25832 0.94962 0.96969 1.00851 1.70059 1.04495 1.47320 1.37418 0.85770 0.79048 0.78682 0.79732 1.20107 1.21073 1.17791 1.21664 1.02716 0.88264 0.92043 1.21360 0.94654 1.00678 0.98969 1.21707 0.96441 0.94228 0.97141 1.22475 1.01710 1.01184 0.94248 1.23083 0.86822 0.95642 1.00662 1.67492 1.25258 1.10693 1.17045 1.19627 0.89580 0.95097 0.89552 0.93984 0.89040 0.93169 0.90848 0.93061 0.89592 0.89758 0.93694 0.87683 0.90028 0.91753 0.91456 0.91329 0.92261 0.93168 0.92727 0.97811 0.96459 0.92738 0.89830 0.89880 0.84932 0.82613 0.79934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 11.01 113.37 1.25 1.61 16 2 O -0.40 -7.31 8.76 -148.98 -1.30 -8.62 16 3 C 0.08 1.27 6.28 71.98 0.45 1.72 16 4 C 0.03 0.67 3.50 86.30 0.30 0.98 16 5 N -0.48 -12.82 4.76 -704.44 -3.35 -16.18 16 6 C 0.08 2.18 5.33 85.85 0.46 2.64 16 7 C 0.03 0.68 4.46 86.08 0.38 1.07 16 8 N -0.55 -15.93 3.73 -879.77 -3.28 -19.21 16 9 C 0.09 2.64 2.29 44.91 0.10 2.74 16 10 H 0.08 2.32 7.81 -2.38 -0.02 2.30 16 11 C -0.17 -3.78 8.64 71.98 0.62 -3.16 16 12 C -0.09 -3.25 4.55 30.59 0.14 -3.11 16 13 C 0.01 0.28 3.92 29.85 0.12 0.40 16 14 C -0.52 -30.33 9.66 25.60 0.25 -30.08 16 15 H 0.03 2.14 7.99 -2.91 -0.02 2.12 16 16 C 0.01 0.62 5.47 84.65 0.46 1.08 16 17 N -0.95 -60.55 13.96 21.45 0.30 -60.25 16 18 Si 0.94 46.98 27.47 68.60 1.88 48.87 16 19 H -0.28 -13.52 7.11 99.48 0.71 -12.82 16 20 H -0.28 -13.82 7.11 99.48 0.71 -13.11 16 21 H -0.25 -12.10 6.54 99.48 0.65 -11.45 16 22 C 0.08 2.18 3.57 85.74 0.31 2.49 16 23 C -0.15 -4.57 5.21 -19.69 -0.10 -4.67 16 24 C -0.07 -2.10 9.82 22.43 0.22 -1.88 16 25 C -0.18 -4.75 10.12 22.42 0.23 -4.52 16 26 C 0.10 2.54 11.16 84.63 0.94 3.49 16 27 N -0.49 -15.51 10.43 -193.25 -2.01 -17.52 16 28 C 0.29 8.83 5.27 132.52 0.70 9.53 16 29 H 0.04 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.09 1.74 2.61 -2.39 -0.01 1.73 16 35 H 0.08 1.69 7.62 -2.38 -0.02 1.68 16 36 H 0.04 1.45 7.76 -2.39 -0.02 1.43 16 37 H 0.11 2.57 7.18 -2.39 -0.02 2.56 16 38 H 0.08 1.97 7.76 -2.38 -0.02 1.95 16 39 H 0.06 1.39 4.29 -2.38 -0.01 1.38 16 40 H 0.07 1.25 6.98 -2.39 -0.02 1.23 16 41 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 42 H 0.06 1.24 6.78 -2.39 -0.02 1.23 16 43 H 0.05 1.89 6.13 -2.38 -0.01 1.88 16 44 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 45 H 0.00 0.17 7.20 -2.39 -0.02 0.16 16 46 H 0.02 0.85 7.14 -2.38 -0.02 0.83 16 47 H 0.26 15.75 8.31 -92.71 -0.77 14.98 16 48 H 0.08 1.89 4.10 -2.39 -0.01 1.88 16 49 H 0.08 2.40 5.29 -2.39 -0.01 2.39 16 50 H 0.13 4.16 8.02 -2.91 -0.02 4.14 16 51 H 0.16 3.39 8.06 -2.91 -0.02 3.36 16 52 H 0.18 3.55 8.06 -2.91 -0.02 3.52 16 Total: -1.00 -72.03 386.19 -0.08 -72.11 By element: Atomic # 1 Polarization: 19.62 SS G_CDS: 0.85 Total: 20.48 kcal Atomic # 6 Polarization: -26.51 SS G_CDS: 6.83 Total: -19.68 kcal Atomic # 7 Polarization: -104.81 SS G_CDS: -8.35 Total: -113.16 kcal Atomic # 8 Polarization: -7.31 SS G_CDS: -1.30 Total: -8.62 kcal Atomic # 14 Polarization: 46.98 SS G_CDS: 1.88 Total: 48.87 kcal Total: -72.03 -0.08 -72.11 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172498936.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.316 kcal (2) G-P(sol) polarization free energy of solvation -72.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.115 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds