Wall clock time and date at job start Tue Mar 31 2020 17:16:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.52997 * 109.47060 * 239.99831 * 2 1 3 5 5 C 1.50705 * 109.47390 * 64.99953 * 4 2 1 6 6 O 1.21282 * 119.99239 * 0.02562 * 5 4 2 7 7 N 1.34771 * 120.00371 * 180.02562 * 5 4 2 8 8 C 1.46502 * 119.99986 * 180.02562 * 7 5 4 9 9 H 1.08999 * 109.46788 * 324.99903 * 8 7 5 10 10 C 1.53002 * 109.46987 * 84.99745 * 8 7 5 11 11 C 1.52998 * 109.47052 * 204.99701 * 8 7 5 12 12 C 1.52998 * 109.46910 * 65.00000 * 11 8 7 13 13 C 1.52998 * 109.46910 * 179.97438 * 12 11 8 14 14 C 1.53008 * 109.47249 * 180.02562 * 13 12 11 15 15 N 1.46503 * 109.47217 * 179.97438 * 14 13 12 16 16 C 1.36932 * 119.99762 * 179.97438 * 15 14 13 17 17 H 1.08004 * 119.99863 * 0.02562 * 16 15 14 18 18 C 1.38816 * 120.00115 * 179.97438 * 16 15 14 19 19 N 1.31622 * 119.99484 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00053 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.46915 * 60.00079 * 20 18 16 22 22 H 1.48502 * 109.46529 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.46903 * 299.99787 * 20 18 16 24 24 C 1.50699 * 109.47083 * 119.99946 * 2 1 3 25 25 C 1.38673 * 120.41919 * 239.71666 * 24 2 1 26 26 C 1.38630 * 118.42012 * 179.78244 * 25 24 2 27 27 C 1.38227 * 119.15958 * 0.51642 * 26 25 24 28 28 N 1.31854 * 120.76578 * 359.72468 * 27 26 25 29 29 C 1.31885 * 121.72349 * 0.02562 * 28 27 26 30 30 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 32 32 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 33 33 H 1.09001 * 109.47630 * 185.00216 * 4 2 1 34 34 H 1.09004 * 109.47346 * 305.00346 * 4 2 1 35 35 H 0.97000 * 120.00126 * 359.97438 * 7 5 4 36 36 H 1.09002 * 109.46909 * 179.97438 * 10 8 7 37 37 H 1.09001 * 109.47503 * 299.99866 * 10 8 7 38 38 H 1.09003 * 109.47194 * 59.99911 * 10 8 7 39 39 H 1.08997 * 109.46957 * 185.00393 * 11 8 7 40 40 H 1.08996 * 109.47312 * 305.00212 * 11 8 7 41 41 H 1.08996 * 109.47390 * 299.99489 * 12 11 8 42 42 H 1.08996 * 109.46961 * 59.99997 * 12 11 8 43 43 H 1.09002 * 109.47539 * 299.99966 * 13 12 11 44 44 H 1.08996 * 109.47312 * 60.00211 * 13 12 11 45 45 H 1.09002 * 109.46687 * 300.00321 * 14 13 12 46 46 H 1.08996 * 109.46927 * 59.99809 * 14 13 12 47 47 H 0.96994 * 119.99855 * 0.02562 * 15 14 13 48 48 H 0.96998 * 119.99689 * 179.97438 * 19 18 16 49 49 H 1.07998 * 120.78957 * 0.02696 * 25 24 2 50 50 H 1.07999 * 120.42155 * 180.22203 * 26 25 24 51 51 H 1.08003 * 119.61845 * 179.70424 * 27 26 25 52 52 H 1.08004 * 119.61680 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6413 0.0570 -2.4766 6 8 1.0117 1.0873 -2.3632 7 7 1.9844 -0.3920 -3.7002 8 6 1.5973 0.3649 -4.8933 9 1 0.6215 0.8231 -4.7321 10 6 2.6348 1.4563 -5.1637 11 6 1.5252 -0.5793 -6.0951 12 6 0.4022 -1.5956 -5.8784 13 6 0.3297 -2.5394 -7.0805 14 6 -0.7937 -3.5554 -6.8642 15 7 -0.8635 -4.4587 -8.0155 16 6 -1.7994 -5.4579 -8.0459 17 1 -2.4862 -5.5797 -7.2214 18 6 -1.8660 -6.3135 -9.1370 19 7 -1.0292 -6.1646 -10.1420 20 14 -3.1431 -7.6761 -9.1788 21 1 -4.5024 -7.0829 -9.1047 22 1 -3.0067 -8.4435 -10.4429 23 1 -2.9356 -8.5846 -8.0227 24 6 2.0323 -0.7104 1.2305 25 6 2.8349 -0.0466 2.1460 26 6 3.2700 -0.7385 3.2657 27 6 2.9008 -2.0610 3.4257 28 7 2.1403 -2.6618 2.5318 29 6 1.7042 -2.0333 1.4575 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 3.1263 -0.7996 -1.2056 34 1 1.6053 -1.7198 -1.2952 35 1 2.4883 -1.2159 -3.7908 36 1 2.3470 2.0192 -6.0517 37 1 2.6862 2.1290 -4.3076 38 1 3.6107 0.9981 -5.3249 39 1 1.3245 -0.0031 -6.9983 40 1 2.4744 -1.1041 -6.2023 41 1 0.6029 -2.1719 -4.9753 42 1 -0.5470 -1.0708 -5.7712 43 1 0.1288 -1.9629 -7.9835 44 1 1.2789 -3.0642 -7.1882 45 1 -0.5932 -4.1319 -5.9611 46 1 -1.7428 -3.0303 -6.7567 47 1 -0.2464 -4.3494 -8.7557 48 1 -1.0754 -6.7627 -10.9043 49 1 3.1112 0.9861 1.9924 50 1 3.8933 -0.2520 4.0012 51 1 3.2396 -2.6085 4.2929 52 1 1.0826 -2.5585 0.7474 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001175573933.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:16:08 Heat of formation + Delta-G solvation = -46.798539 kcal Electronic energy + Delta-G solvation = -27552.162896 eV Core-core repulsion = 23742.657493 eV Total energy + Delta-G solvation = -3809.505403 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.43861 -40.69946 -38.17604 -36.97129 -36.22750 -34.74716 -33.18624 -32.97519 -31.83503 -30.86723 -28.82110 -28.59646 -25.93204 -25.16927 -24.45171 -23.75010 -22.42609 -22.01109 -21.48738 -20.90292 -19.12356 -18.37838 -17.80955 -17.40731 -17.01256 -16.68882 -16.35628 -16.22528 -15.89631 -15.40243 -15.30295 -15.07719 -15.03528 -14.61107 -14.60711 -14.22293 -14.11448 -13.95016 -13.93171 -13.74330 -13.25053 -13.00997 -12.95262 -12.86940 -12.83532 -12.44315 -12.33828 -12.22288 -12.19800 -12.16404 -11.88033 -11.83862 -11.76310 -11.47347 -11.37329 -10.93167 -10.74075 -10.68172 -10.33196 -9.96593 -9.87029 -9.01627 -7.96637 -5.25901 0.18518 0.37384 1.46370 1.49863 1.56114 1.73518 2.29575 2.55294 2.88920 3.36413 3.50302 3.61742 3.70092 3.79790 4.00308 4.05302 4.07133 4.08598 4.11655 4.13746 4.22205 4.31997 4.37500 4.44589 4.48590 4.61905 4.65849 4.67868 4.69463 4.80296 4.80908 4.88579 4.90945 4.95138 5.00542 5.01835 5.03676 5.13742 5.16217 5.25149 5.27947 5.33166 5.35615 5.45468 5.45878 5.49910 5.53766 5.68057 5.81343 6.26131 6.65479 7.06670 7.31794 7.36287 8.08712 8.32046 9.26675 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.010929 B = 0.001920 C = 0.001691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2561.265305 B =14578.171864 C =16550.205420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.021 4.021 3 H 0.082 0.918 4 C -0.132 4.132 5 C 0.513 3.487 6 O -0.575 6.575 7 N -0.717 5.717 8 C 0.144 3.856 9 H 0.067 0.933 10 C -0.156 4.156 11 C -0.117 4.117 12 C -0.104 4.104 13 C -0.113 4.113 14 C 0.148 3.852 15 N -0.749 5.749 16 C -0.252 4.252 17 H 0.073 0.927 18 C -0.077 4.077 19 N -0.969 5.969 20 Si 0.976 3.024 21 H -0.278 1.278 22 H -0.293 1.293 23 H -0.277 1.277 24 C -0.128 4.128 25 C -0.079 4.079 26 C -0.166 4.166 27 C 0.077 3.923 28 N -0.515 5.515 29 C 0.090 3.910 30 H 0.057 0.943 31 H 0.052 0.948 32 H 0.062 0.938 33 H 0.112 0.888 34 H 0.110 0.890 35 H 0.412 0.588 36 H 0.072 0.928 37 H 0.044 0.956 38 H 0.068 0.932 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.067 0.933 42 H 0.054 0.946 43 H 0.056 0.944 44 H 0.062 0.938 45 H 0.018 0.982 46 H 0.012 0.988 47 H 0.374 0.626 48 H 0.252 0.748 49 H 0.152 0.848 50 H 0.162 0.838 51 H 0.173 0.827 52 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.822 17.218 25.561 33.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.041 4.041 3 H 0.101 0.899 4 C -0.171 4.171 5 C 0.301 3.699 6 O -0.455 6.455 7 N -0.369 5.369 8 C 0.040 3.960 9 H 0.085 0.915 10 C -0.215 4.215 11 C -0.155 4.155 12 C -0.142 4.142 13 C -0.151 4.151 14 C 0.022 3.978 15 N -0.392 5.392 16 C -0.383 4.383 17 H 0.091 0.909 18 C -0.269 4.269 19 N -0.619 5.619 20 Si 0.804 3.196 21 H -0.204 1.204 22 H -0.219 1.219 23 H -0.203 1.203 24 C -0.130 4.130 25 C -0.105 4.105 26 C -0.186 4.186 27 C -0.079 4.079 28 N -0.224 5.224 29 C -0.067 4.067 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.130 0.870 34 H 0.128 0.872 35 H 0.249 0.751 36 H 0.091 0.909 37 H 0.063 0.937 38 H 0.087 0.913 39 H 0.101 0.899 40 H 0.101 0.899 41 H 0.086 0.914 42 H 0.073 0.927 43 H 0.074 0.926 44 H 0.081 0.919 45 H 0.036 0.964 46 H 0.030 0.970 47 H 0.206 0.794 48 H 0.061 0.939 49 H 0.169 0.831 50 H 0.179 0.821 51 H 0.190 0.810 52 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 13.000 16.971 25.831 33.530 hybrid contribution -0.215 -0.315 -0.801 0.887 sum 12.786 16.656 25.031 32.672 Atomic orbital electron populations 1.21925 0.94225 1.02010 1.02341 1.19689 0.96095 0.98792 0.89518 0.89922 1.21792 1.04224 1.00434 0.90675 1.20973 0.78236 0.85265 0.85430 1.90664 1.41443 1.26315 1.87093 1.46120 1.57463 1.27980 1.05309 1.20905 0.98472 0.92260 0.84382 0.91473 1.22105 0.99379 0.98209 1.01769 1.21838 0.99498 0.96794 0.97363 1.21411 0.98963 0.96532 0.97266 1.21606 0.97924 0.96530 0.99005 1.20863 0.96632 0.90858 0.89487 1.42621 1.40272 1.35305 1.20971 1.19627 1.09706 1.06571 1.02437 0.90876 1.25620 1.01941 1.02620 0.96723 1.69811 1.41144 1.41610 1.09370 0.85177 0.78769 0.78927 0.76689 1.20432 1.21877 1.20250 1.20882 0.98904 0.95440 0.97745 1.21867 0.94477 1.01125 0.93034 1.22460 1.01345 0.95718 0.99062 1.23215 0.93660 0.93305 0.97752 1.67704 1.11173 1.40004 1.03498 1.22797 0.97270 0.92027 0.94599 0.92384 0.92877 0.91946 0.86962 0.87226 0.75135 0.90914 0.93682 0.91323 0.89891 0.89918 0.91383 0.92711 0.92571 0.91904 0.96358 0.96975 0.79433 0.93906 0.83075 0.82062 0.81025 0.82473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.46 8.75 71.98 0.63 -1.83 16 2 C -0.02 -0.29 2.22 -11.54 -0.03 -0.32 16 3 H 0.08 1.24 7.74 -2.39 -0.02 1.22 16 4 C -0.13 -1.56 4.92 29.85 0.15 -1.41 16 5 C 0.51 8.98 7.51 87.66 0.66 9.63 16 6 O -0.58 -14.39 13.63 -3.04 -0.04 -14.43 16 7 N -0.72 -10.52 4.53 -442.53 -2.00 -12.52 16 8 C 0.14 2.44 2.57 44.99 0.12 2.55 16 9 H 0.07 1.46 7.58 -2.39 -0.02 1.44 16 10 C -0.16 -2.36 9.48 71.98 0.68 -1.68 16 11 C -0.12 -1.95 4.75 30.59 0.15 -1.81 16 12 C -0.10 -2.31 5.10 30.59 0.16 -2.15 16 13 C -0.11 -3.41 5.33 30.60 0.16 -3.25 16 14 C 0.15 6.00 6.26 86.38 0.54 6.54 16 15 N -0.75 -39.25 5.60 -343.43 -1.92 -41.18 16 16 C -0.25 -14.48 9.99 84.04 0.84 -13.64 16 17 H 0.07 4.05 7.83 -2.91 -0.02 4.02 16 18 C -0.08 -4.49 5.50 84.86 0.47 -4.03 16 19 N -0.97 -59.97 13.06 21.65 0.28 -59.68 16 20 Si 0.98 46.66 29.55 68.60 2.03 48.69 16 21 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 22 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 23 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 24 C -0.13 -1.73 4.79 -19.77 -0.09 -1.82 16 25 C -0.08 -0.88 9.81 22.47 0.22 -0.66 16 26 C -0.17 -1.66 10.11 22.36 0.23 -1.43 16 27 C 0.08 1.03 11.18 84.69 0.95 1.98 16 28 N -0.52 -9.58 10.36 -195.84 -2.03 -11.61 16 29 C 0.09 1.44 9.95 84.67 0.84 2.28 16 30 H 0.06 0.89 7.41 -2.39 -0.02 0.87 16 31 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.06 1.33 5.95 -2.39 -0.01 1.31 16 33 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.11 1.07 7.60 -2.39 -0.02 1.05 16 35 H 0.41 4.19 8.60 -92.71 -0.80 3.40 16 36 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.07 1.42 7.75 -2.39 -0.02 1.40 16 42 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 43 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 44 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 45 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 46 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 47 H 0.37 20.59 7.67 -92.71 -0.71 19.88 16 48 H 0.25 15.08 8.31 -92.71 -0.77 14.31 16 49 H 0.15 1.08 8.00 -2.91 -0.02 1.06 16 50 H 0.16 0.64 8.06 -2.91 -0.02 0.61 16 51 H 0.17 1.43 8.06 -2.91 -0.02 1.41 16 52 H 0.16 2.20 7.19 -2.91 -0.02 2.17 16 Total: -1.00 -74.33 421.76 2.36 -71.97 By element: Atomic # 1 Polarization: 30.41 SS G_CDS: -0.61 Total: 29.80 kcal Atomic # 6 Polarization: -17.70 SS G_CDS: 6.66 Total: -11.04 kcal Atomic # 7 Polarization: -119.32 SS G_CDS: -5.67 Total: -124.99 kcal Atomic # 8 Polarization: -14.39 SS G_CDS: -0.04 Total: -14.43 kcal Atomic # 14 Polarization: 46.66 SS G_CDS: 2.03 Total: 48.69 kcal Total: -74.33 2.36 -71.97 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175573933.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.172 kcal (2) G-P(sol) polarization free energy of solvation -74.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds