Wall clock time and date at job start Tue Mar 31 2020 17:16:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.46949 * 2 1 4 4 C 1.53000 * 109.47036 * 119.99038 * 2 1 3 5 5 C 1.52998 * 109.47432 * 184.99956 * 4 2 1 6 6 C 1.53000 * 109.47432 * 180.02562 * 5 4 2 7 7 C 1.53006 * 109.47255 * 180.02562 * 6 5 4 8 8 N 1.46493 * 109.46941 * 179.97438 * 7 6 5 9 9 C 1.36936 * 119.99736 * 179.97438 * 8 7 6 10 10 H 1.08000 * 120.00236 * 0.02562 * 9 8 7 11 11 C 1.38817 * 120.00089 * 180.02562 * 9 8 7 12 12 N 1.31617 * 119.99829 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 120.00237 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47020 * 89.99621 * 13 11 9 15 15 H 1.48499 * 109.47285 * 209.99777 * 13 11 9 16 16 H 1.48503 * 109.46977 * 330.00320 * 13 11 9 17 17 N 1.46495 * 109.47669 * 239.99373 * 2 1 3 18 18 C 1.34776 * 120.00298 * 84.99649 * 17 2 1 19 19 O 1.21280 * 119.99335 * 0.02562 * 18 17 2 20 20 C 1.50698 * 120.00243 * 180.02562 * 18 17 2 21 21 C 1.53002 * 109.46926 * 180.02562 * 20 18 17 22 22 C 1.52995 * 109.46875 * 179.97438 * 21 20 18 23 23 C 1.50706 * 109.47285 * 179.97438 * 22 21 20 24 24 C 1.38675 * 120.41529 * 89.99913 * 23 22 21 25 25 C 1.38631 * 118.41792 * 179.97438 * 24 23 22 26 26 C 1.38221 * 119.16077 * 0.25627 * 25 24 23 27 27 N 1.31860 * 120.76509 * 359.49797 * 26 25 24 28 28 C 1.31882 * 121.72556 * 0.49011 * 27 26 25 29 29 H 1.08999 * 109.47041 * 300.00368 * 1 2 3 30 30 H 1.09000 * 109.46602 * 60.00651 * 1 2 3 31 31 H 1.08998 * 109.46927 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47236 * 305.00438 * 4 2 1 33 33 H 1.09002 * 109.46918 * 65.00483 * 4 2 1 34 34 H 1.08994 * 109.47333 * 300.00645 * 5 4 2 35 35 H 1.09009 * 109.46966 * 60.00207 * 5 4 2 36 36 H 1.09003 * 109.47236 * 300.00482 * 6 5 4 37 37 H 1.09002 * 109.46918 * 60.00527 * 6 5 4 38 38 H 1.08994 * 109.47329 * 300.00534 * 7 6 5 39 39 H 1.09002 * 109.46820 * 60.00353 * 7 6 5 40 40 H 0.97002 * 120.00337 * 0.02562 * 8 7 6 41 41 H 0.96998 * 120.00015 * 180.02562 * 12 11 9 42 42 H 0.97006 * 119.99994 * 265.00067 * 17 2 1 43 43 H 1.09003 * 109.46982 * 60.00235 * 20 18 17 44 44 H 1.09001 * 109.46790 * 300.00086 * 20 18 17 45 45 H 1.08995 * 109.47078 * 59.99994 * 21 20 18 46 46 H 1.09001 * 109.47331 * 299.99602 * 21 20 18 47 47 H 1.09008 * 109.47427 * 59.99953 * 22 21 20 48 48 H 1.08998 * 109.47562 * 299.99860 * 22 21 20 49 49 H 1.07998 * 120.79161 * 359.96013 * 24 23 22 50 50 H 1.08002 * 120.41548 * 179.97438 * 25 24 23 51 51 H 1.08002 * 119.62066 * 179.74470 * 26 25 24 52 52 H 1.07993 * 119.62126 * 179.75488 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7210 1.2494 5 6 3.5648 -0.6131 1.3139 6 6 4.0748 -1.3347 2.5629 7 6 5.5997 -1.2262 2.6277 8 7 6.0879 -1.9166 3.8240 9 6 7.4299 -1.9530 4.0937 10 1 8.1284 -1.4723 3.4247 11 6 7.8927 -2.6076 5.2269 12 7 7.0414 -3.1930 6.0425 13 14 9.7233 -2.6566 5.5953 14 1 10.0927 -1.4823 6.4259 15 1 10.0470 -3.9051 6.3314 16 1 10.4857 -2.6212 4.3214 17 7 2.0185 -0.6907 -1.1960 18 6 2.1472 -0.0185 -2.3571 19 8 1.8591 1.1583 -2.4115 20 6 2.6491 -0.7292 -3.5875 21 6 2.7013 0.2540 -4.7587 22 6 3.2114 -0.4674 -6.0077 23 6 3.2623 0.5009 -7.1615 24 6 4.4091 1.2408 -7.4071 25 6 4.4106 2.1188 -8.4799 26 6 3.2752 2.2307 -9.2603 27 7 2.2039 1.5074 -8.9999 28 6 2.1668 0.6621 -7.9883 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5137 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 1.6053 -0.2614 2.1370 33 1 1.7517 -1.7713 1.2058 34 1 3.9995 -1.0727 0.4263 35 1 3.8532 0.4372 1.3574 36 1 3.6402 -0.8755 3.4508 37 1 3.7865 -2.3850 2.5189 38 1 6.0346 -1.6851 1.7399 39 1 5.8876 -0.1759 2.6719 40 1 5.4606 -2.3487 4.4246 41 1 7.3647 -3.6501 6.8345 42 1 2.2492 -1.6319 -1.1523 43 1 1.9762 -1.5511 -3.8323 44 1 3.6483 -1.1216 -3.3982 45 1 3.3743 1.0756 -4.5136 46 1 1.7023 0.6468 -4.9481 47 1 2.5387 -1.2893 -6.2530 48 1 4.2105 -0.8598 -5.8181 49 1 5.2802 1.1358 -6.7774 50 1 5.2863 2.7113 -8.7003 51 1 3.2668 2.9155 -10.0954 52 1 1.2700 0.0895 -7.8037 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001175940471.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:16:01 Heat of formation + Delta-G solvation = -54.448389 kcal Electronic energy + Delta-G solvation = -26787.399065 eV Core-core repulsion = 22977.561939 eV Total energy + Delta-G solvation = -3809.837126 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.14126 -40.79781 -38.11149 -36.88234 -36.15241 -34.75031 -33.36495 -32.94702 -32.32393 -31.41726 -28.81864 -28.11434 -25.94009 -24.50550 -24.44870 -23.56214 -22.24842 -22.01930 -21.60202 -21.23495 -19.12321 -18.16742 -17.84018 -17.43648 -17.23919 -16.68907 -16.56224 -16.25059 -15.99734 -15.41832 -15.33809 -15.03045 -14.98488 -14.83830 -14.56629 -14.22827 -14.15660 -13.99911 -13.93028 -13.46958 -13.21252 -12.97827 -12.89505 -12.85100 -12.83950 -12.59088 -12.45518 -12.25853 -12.15190 -12.13062 -11.87949 -11.80086 -11.62222 -11.48546 -11.38262 -10.93982 -10.81170 -10.68922 -10.36645 -10.00054 -9.85383 -9.01462 -7.96703 -5.25943 0.18776 0.36225 1.46762 1.48846 1.57366 1.74836 2.32238 2.55299 2.87981 3.36765 3.56370 3.60669 3.79746 3.87228 3.93140 4.04955 4.06525 4.09538 4.10897 4.15265 4.26034 4.29800 4.36353 4.43203 4.54963 4.60710 4.64791 4.65188 4.76884 4.79937 4.82427 4.86375 4.88555 4.94383 4.99687 5.00637 5.02994 5.13488 5.15780 5.22890 5.27047 5.32565 5.40121 5.45445 5.46138 5.46902 5.53429 5.66138 5.82332 6.26188 6.66817 7.04270 7.31953 7.37544 8.08809 8.32069 9.26874 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.011903 B = 0.001610 C = 0.001448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2351.787229 B =17386.128367 C =19337.415343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.143 3.857 3 H 0.062 0.938 4 C -0.116 4.116 5 C -0.104 4.104 6 C -0.113 4.113 7 C 0.148 3.852 8 N -0.749 5.749 9 C -0.252 4.252 10 H 0.074 0.926 11 C -0.075 4.075 12 N -0.969 5.969 13 Si 0.975 3.025 14 H -0.287 1.287 15 H -0.292 1.292 16 H -0.269 1.269 17 N -0.715 5.715 18 C 0.506 3.494 19 O -0.592 6.592 20 C -0.135 4.135 21 C -0.092 4.092 22 C -0.070 4.070 23 C -0.135 4.135 24 C -0.085 4.085 25 C -0.172 4.172 26 C 0.073 3.927 27 N -0.518 5.518 28 C 0.082 3.918 29 H 0.072 0.928 30 H 0.041 0.959 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.069 0.931 35 H 0.052 0.948 36 H 0.055 0.945 37 H 0.064 0.936 38 H 0.020 0.980 39 H 0.011 0.989 40 H 0.374 0.626 41 H 0.252 0.748 42 H 0.414 0.586 43 H 0.123 0.877 44 H 0.117 0.883 45 H 0.049 0.951 46 H 0.052 0.948 47 H 0.095 0.905 48 H 0.092 0.908 49 H 0.151 0.849 50 H 0.158 0.842 51 H 0.172 0.828 52 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.673 4.805 -28.693 31.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.038 3.962 3 H 0.080 0.920 4 C -0.154 4.154 5 C -0.142 4.142 6 C -0.150 4.150 7 C 0.022 3.978 8 N -0.392 5.392 9 C -0.384 4.384 10 H 0.092 0.908 11 C -0.267 4.267 12 N -0.620 5.620 13 Si 0.804 3.196 14 H -0.214 1.214 15 H -0.219 1.219 16 H -0.194 1.194 17 N -0.368 5.368 18 C 0.294 3.706 19 O -0.473 6.473 20 C -0.174 4.174 21 C -0.130 4.130 22 C -0.107 4.107 23 C -0.137 4.137 24 C -0.111 4.111 25 C -0.191 4.191 26 C -0.083 4.083 27 N -0.227 5.227 28 C -0.075 4.075 29 H 0.091 0.909 30 H 0.060 0.940 31 H 0.090 0.910 32 H 0.100 0.900 33 H 0.103 0.897 34 H 0.088 0.912 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.083 0.917 38 H 0.038 0.962 39 H 0.029 0.971 40 H 0.206 0.794 41 H 0.061 0.939 42 H 0.251 0.749 43 H 0.141 0.859 44 H 0.135 0.865 45 H 0.068 0.932 46 H 0.071 0.929 47 H 0.114 0.886 48 H 0.110 0.890 49 H 0.169 0.831 50 H 0.176 0.824 51 H 0.189 0.811 52 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -13.440 5.765 -29.308 32.754 hybrid contribution 1.550 -0.368 1.340 2.082 sum -11.890 5.396 -27.969 30.867 Atomic orbital electron populations 1.22104 0.94641 1.02788 1.01942 1.20895 0.94269 0.96577 0.84475 0.91961 1.21834 0.94759 1.01980 0.96842 1.21413 0.95758 0.99990 0.97016 1.21605 0.93751 1.00982 0.98711 1.20861 0.94236 0.94215 0.88529 1.42627 1.04516 1.65368 1.26657 1.19674 0.85371 1.27779 1.05540 0.90822 1.25600 1.02235 1.01131 0.97778 1.69814 1.34712 1.41886 1.15539 0.85115 0.79858 0.76707 0.77926 1.21402 1.21885 1.19387 1.46115 1.66718 1.14744 1.09188 1.21373 0.76495 0.86936 0.85804 1.90692 1.52283 1.18412 1.85912 1.21741 1.05048 0.99763 0.90870 1.21199 1.01329 0.97491 0.92975 1.20578 1.04014 0.96027 0.90125 1.21128 0.94722 0.99399 0.98460 1.21906 0.98560 0.94004 0.96615 1.22471 1.00602 0.99888 0.96163 1.23166 0.88746 0.96915 0.99499 1.67666 1.29239 1.06917 1.18849 1.22988 0.98556 0.95429 0.90522 0.90950 0.94009 0.91031 0.89989 0.89661 0.91224 0.92921 0.92658 0.91742 0.96215 0.97058 0.79435 0.93909 0.74862 0.85925 0.86509 0.93196 0.92900 0.88637 0.88962 0.83112 0.82449 0.81138 0.81801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.50 9.48 71.98 0.68 -1.82 16 2 C 0.14 2.52 2.57 44.99 0.12 2.63 16 3 H 0.06 1.44 7.58 -2.39 -0.02 1.43 16 4 C -0.12 -1.95 4.75 30.59 0.15 -1.81 16 5 C -0.10 -2.29 5.10 30.59 0.16 -2.14 16 6 C -0.11 -3.36 5.33 30.60 0.16 -3.20 16 7 C 0.15 5.92 6.26 86.38 0.54 6.46 16 8 N -0.75 -38.84 5.60 -343.46 -1.92 -40.76 16 9 C -0.25 -14.35 9.99 84.03 0.84 -13.51 16 10 H 0.07 4.04 7.83 -2.91 -0.02 4.01 16 11 C -0.08 -4.36 5.50 84.86 0.47 -3.89 16 12 N -0.97 -59.51 13.06 21.65 0.28 -59.23 16 13 Si 0.98 46.16 29.55 68.60 2.03 48.18 16 14 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 15 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 16 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 17 N -0.72 -10.61 4.53 -442.54 -2.00 -12.61 16 18 C 0.51 9.26 7.79 87.66 0.68 9.94 16 19 O -0.59 -16.70 15.64 -3.03 -0.05 -16.75 16 20 C -0.13 -1.32 5.70 29.85 0.17 -1.15 16 21 C -0.09 -1.18 4.49 30.59 0.14 -1.05 16 22 C -0.07 -0.59 5.37 29.85 0.16 -0.43 16 23 C -0.14 -1.78 5.15 -19.77 -0.10 -1.88 16 24 C -0.08 -1.05 9.86 22.47 0.22 -0.83 16 25 C -0.17 -2.06 10.11 22.36 0.23 -1.83 16 26 C 0.07 1.08 11.18 84.68 0.95 2.03 16 27 N -0.52 -9.92 10.36 -195.85 -2.03 -11.95 16 28 C 0.08 1.30 10.86 84.67 0.92 2.22 16 29 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.07 1.42 7.75 -2.39 -0.02 1.40 16 35 H 0.05 1.27 8.14 -2.38 -0.02 1.25 16 36 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 40 H 0.37 20.40 7.67 -92.71 -0.71 19.69 16 41 H 0.25 14.93 8.31 -92.71 -0.77 14.16 16 42 H 0.41 3.85 8.60 -92.70 -0.80 3.06 16 43 H 0.12 0.55 8.14 -2.39 -0.02 0.53 16 44 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 45 H 0.05 0.86 8.10 -2.39 -0.02 0.84 16 46 H 0.05 0.88 8.10 -2.39 -0.02 0.86 16 47 H 0.10 0.49 8.09 -2.38 -0.02 0.47 16 48 H 0.09 0.54 8.10 -2.39 -0.02 0.52 16 49 H 0.15 1.27 8.06 -2.91 -0.02 1.24 16 50 H 0.16 1.02 8.06 -2.91 -0.02 1.00 16 51 H 0.17 1.65 8.06 -2.91 -0.02 1.62 16 52 H 0.16 1.97 8.06 -2.91 -0.02 1.94 16 Total: -1.00 -77.78 429.65 2.16 -75.62 By element: Atomic # 1 Polarization: 28.36 SS G_CDS: -0.62 Total: 27.74 kcal Atomic # 6 Polarization: -16.72 SS G_CDS: 6.47 Total: -10.24 kcal Atomic # 7 Polarization: -118.87 SS G_CDS: -5.67 Total: -124.55 kcal Atomic # 8 Polarization: -16.70 SS G_CDS: -0.05 Total: -16.75 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 2.03 Total: 48.18 kcal Total: -77.78 2.16 -75.62 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175940471.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.170 kcal (2) G-P(sol) polarization free energy of solvation -77.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds