Wall clock time and date at job start Tue Mar 31 2020 17:15:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47423 * 2 1 4 4 C 1.53006 * 109.47184 * 119.99582 * 2 1 3 5 5 C 1.52999 * 109.46997 * 185.00136 * 4 2 1 6 6 C 1.53006 * 109.46623 * 179.97438 * 5 4 2 7 7 C 1.52999 * 109.46626 * 179.97438 * 6 5 4 8 8 N 1.46506 * 109.46691 * 179.97438 * 7 6 5 9 9 C 1.36938 * 119.99597 * 179.97438 * 8 7 6 10 10 H 1.07999 * 120.00321 * 0.02562 * 9 8 7 11 11 C 1.38815 * 119.99825 * 180.02562 * 9 8 7 12 12 N 1.31617 * 119.99912 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 120.00119 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.47317 * 0.02562 * 13 11 9 15 15 H 1.48506 * 109.47211 * 120.00274 * 13 11 9 16 16 H 1.48507 * 109.47345 * 240.00036 * 13 11 9 17 17 N 1.46500 * 109.47548 * 239.99557 * 2 1 3 18 18 C 1.34778 * 119.99992 * 84.99863 * 17 2 1 19 19 O 1.21698 * 119.99703 * 0.02562 * 18 17 2 20 20 C 1.46675 * 120.00236 * 180.02562 * 18 17 2 21 21 C 1.38050 * 126.20402 * 179.69542 * 20 18 17 22 22 C 1.39255 * 106.97269 * 179.83983 * 21 20 18 23 23 C 1.35959 * 108.03902 * 0.46055 * 22 21 20 24 24 N 1.35112 * 108.76856 * 359.67084 * 23 22 21 25 25 H 0.96997 * 125.69035 * 180.10828 * 24 23 22 26 26 C 1.51022 * 123.85238 * 179.58897 * 23 22 21 27 27 C 1.53327 * 108.41166 * 343.33465 * 26 23 22 28 28 C 1.53103 * 109.53340 * 50.15988 * 27 26 23 29 29 C 1.50836 * 127.70046 * 180.23278 * 22 21 20 30 30 H 1.08992 * 109.47188 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46828 * 300.00423 * 1 2 3 32 32 H 1.09002 * 109.46911 * 60.00306 * 1 2 3 33 33 H 1.09000 * 109.46866 * 64.99924 * 4 2 1 34 34 H 1.09001 * 109.46611 * 305.00041 * 4 2 1 35 35 H 1.09000 * 109.47486 * 60.00167 * 5 4 2 36 36 H 1.09001 * 109.47362 * 299.99445 * 5 4 2 37 37 H 1.08993 * 109.46955 * 300.00075 * 6 5 4 38 38 H 1.09000 * 109.47050 * 59.99904 * 6 5 4 39 39 H 1.08993 * 109.47839 * 299.99931 * 7 6 5 40 40 H 1.09000 * 109.47160 * 60.00369 * 7 6 5 41 41 H 0.96999 * 120.00076 * 0.02562 * 8 7 6 42 42 H 0.97000 * 120.00284 * 180.02562 * 12 11 9 43 43 H 0.97001 * 120.00257 * 265.00388 * 17 2 1 44 44 H 1.07991 * 126.51394 * 359.94677 * 21 20 18 45 45 H 1.09000 * 109.67796 * 103.06113 * 26 23 22 46 46 H 1.08998 * 109.68204 * 223.60509 * 26 23 22 47 47 H 1.09005 * 109.45528 * 290.14114 * 27 26 23 48 48 H 1.08996 * 109.44874 * 170.17470 * 27 26 23 49 49 H 1.08992 * 109.47329 * 169.60939 * 28 27 26 50 50 H 1.08994 * 109.47806 * 49.58963 * 28 27 26 51 51 H 1.08994 * 109.68847 * 283.50295 * 29 22 21 52 52 H 1.08999 * 109.68427 * 44.06174 * 29 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.6132 1.3138 6 6 4.0747 -1.3338 2.5635 7 6 5.5996 -1.2264 2.6275 8 7 6.0878 -1.9159 3.8245 9 6 7.4299 -1.9529 4.0937 10 1 8.1285 -1.4734 3.4240 11 6 7.8926 -2.6066 5.2275 12 7 7.0413 -3.1913 6.0434 13 14 9.7233 -2.6565 5.5952 14 1 10.4619 -1.9294 4.5317 15 1 9.9825 -2.0108 6.9072 16 1 10.1810 -4.0686 5.6395 17 7 2.0184 -0.6907 -1.1961 18 6 2.1472 -0.0184 -2.3571 19 8 1.8581 1.1625 -2.4117 20 6 2.6357 -0.7100 -3.5548 21 6 2.8103 -0.1510 -4.8049 22 6 3.2916 -1.1586 -5.6371 23 6 3.3927 -2.2985 -4.9030 24 7 2.9979 -2.0371 -3.6376 25 1 2.9741 -2.6766 -2.9087 26 6 3.8723 -3.6178 -5.4597 27 6 3.8060 -3.5505 -6.9901 28 6 4.4982 -2.2746 -7.4769 29 6 3.6469 -1.0560 -7.0994 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.7516 -1.7714 1.2057 34 1 1.6054 -0.2615 2.1370 35 1 3.8532 0.4371 1.3574 36 1 3.9995 -1.0728 0.4261 37 1 3.6400 -0.8739 3.4508 38 1 3.7863 -2.3841 2.5203 39 1 6.0340 -1.6866 1.7401 40 1 5.8883 -0.1762 2.6705 41 1 5.4604 -2.3468 4.4258 42 1 7.3645 -3.6479 6.8359 43 1 2.2491 -1.6319 -1.1525 44 1 2.6130 0.8734 -5.0840 45 1 4.9002 -3.7973 -5.1446 46 1 3.2317 -4.4229 -5.0997 47 1 2.7634 -3.5422 -7.3083 48 1 4.3080 -4.4203 -7.4137 49 1 4.6147 -2.3150 -8.5598 50 1 5.4789 -2.1919 -7.0085 51 1 2.7365 -1.0443 -7.6986 52 1 4.2149 -0.1426 -7.2760 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001176050108.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:15:06 Heat of formation + Delta-G solvation = -23.558548 kcal Electronic energy + Delta-G solvation = -27856.699253 eV Core-core repulsion = 24048.201611 eV Total energy + Delta-G solvation = -3808.497642 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.89153 -39.69234 -37.04040 -36.58749 -35.28868 -33.31751 -32.50956 -31.70123 -30.40144 -29.48207 -28.82041 -27.47626 -24.82073 -24.10291 -22.83304 -22.18572 -21.68918 -20.89509 -20.68949 -20.31744 -18.84884 -18.60022 -17.02636 -16.51154 -16.17345 -15.59124 -15.15861 -14.99876 -14.72739 -14.42105 -14.24228 -14.09118 -14.04224 -13.71647 -13.54443 -13.39758 -13.18654 -12.99744 -12.90798 -12.85170 -12.69103 -12.36305 -12.14998 -11.80124 -11.49541 -11.30531 -11.24379 -11.10685 -11.02367 -10.87664 -10.83912 -10.73981 -10.43233 -10.34885 -10.22289 -9.98176 -9.68733 -9.32870 -9.05796 -8.87658 -8.20535 -6.91742 -5.76889 -3.05309 1.22476 2.38919 2.71194 2.92113 3.22419 3.42671 3.48283 3.50704 4.27387 4.41917 4.46441 4.49423 4.59556 4.67605 4.77035 4.86400 4.93521 4.95601 5.12539 5.15343 5.18948 5.22710 5.26164 5.36947 5.42489 5.47459 5.52655 5.55620 5.58514 5.61526 5.65706 5.73875 5.75689 5.84701 5.92264 5.93088 5.95374 5.97148 6.07316 6.17942 6.27435 6.33414 6.36099 6.43948 6.54900 6.68148 6.87355 6.91215 7.05781 7.29979 7.70325 7.98907 8.42504 9.53313 10.12289 10.46958 11.46284 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.009898 B = 0.002156 C = 0.001853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2828.275885 B =12981.990839 C =15103.805915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.142 3.858 3 H 0.091 0.909 4 C -0.127 4.127 5 C -0.114 4.114 6 C -0.125 4.125 7 C 0.152 3.848 8 N -0.735 5.735 9 C -0.238 4.238 10 H 0.070 0.930 11 C -0.017 4.017 12 N -0.935 5.935 13 Si 0.907 3.093 14 H -0.280 1.280 15 H -0.291 1.291 16 H -0.291 1.291 17 N -0.724 5.724 18 C 0.591 3.409 19 O -0.531 6.531 20 C -0.059 4.059 21 C -0.096 4.096 22 C -0.177 4.177 23 C 0.054 3.946 24 N -0.531 5.531 25 H 0.415 0.585 26 C -0.056 4.056 27 C -0.112 4.112 28 C -0.121 4.121 29 C -0.047 4.047 30 H 0.055 0.945 31 H 0.067 0.933 32 H 0.059 0.941 33 H 0.067 0.933 34 H 0.081 0.919 35 H 0.063 0.937 36 H 0.058 0.942 37 H 0.062 0.938 38 H 0.059 0.941 39 H 0.015 0.985 40 H 0.017 0.983 41 H 0.383 0.617 42 H 0.254 0.746 43 H 0.393 0.607 44 H 0.146 0.854 45 H 0.082 0.918 46 H 0.075 0.925 47 H 0.067 0.933 48 H 0.071 0.929 49 H 0.066 0.934 50 H 0.065 0.935 51 H 0.069 0.931 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.060 0.282 -26.961 30.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.038 3.962 3 H 0.110 0.890 4 C -0.165 4.165 5 C -0.152 4.152 6 C -0.163 4.163 7 C 0.025 3.975 8 N -0.379 5.379 9 C -0.369 4.369 10 H 0.088 0.912 11 C -0.212 4.212 12 N -0.584 5.584 13 Si 0.738 3.262 14 H -0.205 1.205 15 H -0.218 1.218 16 H -0.219 1.219 17 N -0.375 5.375 18 C 0.379 3.621 19 O -0.408 6.408 20 C -0.171 4.171 21 C -0.123 4.123 22 C -0.183 4.183 23 C -0.065 4.065 24 N -0.126 5.126 25 H 0.252 0.748 26 C -0.093 4.093 27 C -0.150 4.150 28 C -0.158 4.158 29 C -0.084 4.084 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.100 0.900 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.033 0.967 40 H 0.035 0.965 41 H 0.216 0.784 42 H 0.064 0.936 43 H 0.227 0.773 44 H 0.164 0.836 45 H 0.100 0.900 46 H 0.094 0.906 47 H 0.086 0.914 48 H 0.089 0.911 49 H 0.085 0.915 50 H 0.084 0.916 51 H 0.087 0.913 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -14.118 1.119 -26.826 30.335 hybrid contribution 0.911 -1.028 1.048 1.728 sum -13.207 0.090 -25.777 28.964 Atomic orbital electron populations 1.22178 0.95254 1.02059 1.02646 1.21077 0.93812 0.97820 0.83489 0.89047 1.21951 0.96897 1.00850 0.96800 1.21523 0.93915 1.01246 0.98534 1.21727 0.97282 1.00191 0.97120 1.20646 0.90975 0.95387 0.90517 1.42399 1.05355 1.65042 1.25108 1.19301 0.83905 1.28302 1.05402 0.91184 1.24758 0.97782 1.00997 0.97709 1.69671 1.32696 1.40913 1.15087 0.86105 0.85028 0.77216 0.77804 1.20547 1.21823 1.21853 1.46002 1.67923 1.13636 1.09935 1.17035 0.77285 0.86202 0.81560 1.90837 1.50723 1.14770 1.84443 1.20404 1.15710 0.84258 0.96727 1.20999 1.01385 0.99451 0.90423 1.19275 1.09740 0.92680 0.96574 1.20481 1.04329 0.97534 0.84132 1.41717 1.50977 1.09615 1.10336 0.74824 1.20344 1.01456 0.91422 0.96125 1.21514 1.01622 0.98333 0.93555 1.21607 0.99233 0.94223 1.00768 1.20056 0.99374 0.98299 0.90695 0.92581 0.91358 0.92148 0.91455 0.89999 0.91840 0.92366 0.91962 0.92206 0.96721 0.96518 0.78355 0.93585 0.77339 0.83579 0.89992 0.90618 0.91412 0.91082 0.91501 0.91591 0.91288 0.91024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.46 9.48 37.16 0.35 -1.11 16 2 C 0.14 1.41 2.57 -67.93 -0.17 1.23 16 3 H 0.09 1.08 7.58 -51.93 -0.39 0.69 16 4 C -0.13 -1.23 4.75 -26.73 -0.13 -1.36 16 5 C -0.11 -1.41 5.10 -26.73 -0.14 -1.54 16 6 C -0.13 -1.98 5.33 -26.73 -0.14 -2.12 16 7 C 0.15 3.15 6.26 -4.04 -0.03 3.12 16 8 N -0.74 -19.24 5.60 -59.91 -0.34 -19.57 16 9 C -0.24 -6.86 9.99 -15.06 -0.15 -7.01 16 10 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 11 C -0.02 -0.49 5.50 -17.43 -0.10 -0.59 16 12 N -0.93 -28.71 13.06 55.49 0.72 -27.98 16 13 Si 0.91 22.74 29.55 -169.99 -5.02 17.71 16 14 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 15 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 16 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 17 N -0.72 -6.96 4.53 -55.11 -0.25 -7.21 16 18 C 0.59 7.21 7.75 -12.85 -0.10 7.11 16 19 O -0.53 -8.31 16.54 5.19 0.09 -8.23 16 20 C -0.06 -0.64 7.06 -81.84 -0.58 -1.22 16 21 C -0.10 -1.06 10.62 -39.27 -0.42 -1.48 16 22 C -0.18 -1.66 5.91 -105.00 -0.62 -2.28 16 23 C 0.05 0.45 7.02 -81.81 -0.57 -0.13 16 24 N -0.53 -4.38 5.98 -5.50 -0.03 -4.41 16 25 H 0.41 2.34 8.19 -40.82 -0.33 2.00 16 26 C -0.06 -0.32 6.30 -27.56 -0.17 -0.49 16 27 C -0.11 -0.57 5.89 -26.51 -0.16 -0.73 16 28 C -0.12 -0.68 5.90 -26.49 -0.16 -0.84 16 29 C -0.05 -0.33 6.28 -27.62 -0.17 -0.50 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.06 0.70 7.75 -51.93 -0.40 0.30 16 37 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 40 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 41 H 0.38 10.43 7.67 -40.82 -0.31 10.12 16 42 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 43 H 0.39 2.89 7.73 -40.82 -0.32 2.57 16 44 H 0.15 1.58 8.06 -52.49 -0.42 1.16 16 45 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 46 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 47 H 0.07 0.35 8.11 -51.93 -0.42 -0.07 16 48 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 49 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 50 H 0.07 0.41 8.11 -51.93 -0.42 -0.01 16 51 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 52 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 LS Contribution 417.92 15.07 6.30 6.30 Total: -1.00 -34.75 417.92 -11.32 -46.07 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: -9.33 Total: 7.25 kcal Atomic # 6 Polarization: -6.47 SS G_CDS: -3.45 Total: -9.92 kcal Atomic # 7 Polarization: -59.29 SS G_CDS: 0.11 Total: -59.18 kcal Atomic # 8 Polarization: -8.31 SS G_CDS: 0.09 Total: -8.23 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -5.02 Total: 17.71 kcal Total LS contribution 6.30 Total: 6.30 kcal Total: -34.75 -11.32 -46.07 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176050108.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.511 kcal (2) G-P(sol) polarization free energy of solvation -34.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds