Wall clock time and date at job start Tue Mar 31 2020 17:15:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47423 * 2 1 4 4 C 1.53006 * 109.47184 * 119.99582 * 2 1 3 5 5 C 1.52999 * 109.46997 * 185.00136 * 4 2 1 6 6 C 1.53006 * 109.46623 * 179.97438 * 5 4 2 7 7 C 1.52999 * 109.46626 * 179.97438 * 6 5 4 8 8 N 1.46506 * 109.46691 * 179.97438 * 7 6 5 9 9 C 1.36938 * 119.99597 * 179.97438 * 8 7 6 10 10 H 1.07999 * 120.00321 * 0.02562 * 9 8 7 11 11 C 1.38815 * 119.99825 * 180.02562 * 9 8 7 12 12 N 1.31617 * 119.99912 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 120.00119 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.47317 * 0.02562 * 13 11 9 15 15 H 1.48506 * 109.47211 * 120.00274 * 13 11 9 16 16 H 1.48507 * 109.47345 * 240.00036 * 13 11 9 17 17 N 1.46500 * 109.47548 * 239.99557 * 2 1 3 18 18 C 1.34778 * 119.99992 * 84.99863 * 17 2 1 19 19 O 1.21698 * 119.99703 * 0.02562 * 18 17 2 20 20 C 1.46675 * 120.00236 * 180.02562 * 18 17 2 21 21 C 1.38050 * 126.20402 * 179.69542 * 20 18 17 22 22 C 1.39255 * 106.97269 * 179.83983 * 21 20 18 23 23 C 1.35959 * 108.03902 * 0.46055 * 22 21 20 24 24 N 1.35112 * 108.76856 * 359.67084 * 23 22 21 25 25 H 0.96997 * 125.69035 * 180.10828 * 24 23 22 26 26 C 1.51022 * 123.85238 * 179.58897 * 23 22 21 27 27 C 1.53327 * 108.41166 * 343.33465 * 26 23 22 28 28 C 1.53103 * 109.53340 * 50.15988 * 27 26 23 29 29 C 1.50836 * 127.70046 * 180.23278 * 22 21 20 30 30 H 1.08992 * 109.47188 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46828 * 300.00423 * 1 2 3 32 32 H 1.09002 * 109.46911 * 60.00306 * 1 2 3 33 33 H 1.09000 * 109.46866 * 64.99924 * 4 2 1 34 34 H 1.09001 * 109.46611 * 305.00041 * 4 2 1 35 35 H 1.09000 * 109.47486 * 60.00167 * 5 4 2 36 36 H 1.09001 * 109.47362 * 299.99445 * 5 4 2 37 37 H 1.08993 * 109.46955 * 300.00075 * 6 5 4 38 38 H 1.09000 * 109.47050 * 59.99904 * 6 5 4 39 39 H 1.08993 * 109.47839 * 299.99931 * 7 6 5 40 40 H 1.09000 * 109.47160 * 60.00369 * 7 6 5 41 41 H 0.96999 * 120.00076 * 0.02562 * 8 7 6 42 42 H 0.97000 * 120.00284 * 180.02562 * 12 11 9 43 43 H 0.97001 * 120.00257 * 265.00388 * 17 2 1 44 44 H 1.07991 * 126.51394 * 359.94677 * 21 20 18 45 45 H 1.09000 * 109.67796 * 103.06113 * 26 23 22 46 46 H 1.08998 * 109.68204 * 223.60509 * 26 23 22 47 47 H 1.09005 * 109.45528 * 290.14114 * 27 26 23 48 48 H 1.08996 * 109.44874 * 170.17470 * 27 26 23 49 49 H 1.08992 * 109.47329 * 169.60939 * 28 27 26 50 50 H 1.08994 * 109.47806 * 49.58963 * 28 27 26 51 51 H 1.08994 * 109.68847 * 283.50295 * 29 22 21 52 52 H 1.08999 * 109.68427 * 44.06174 * 29 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.6132 1.3138 6 6 4.0747 -1.3338 2.5635 7 6 5.5996 -1.2264 2.6275 8 7 6.0878 -1.9159 3.8245 9 6 7.4299 -1.9529 4.0937 10 1 8.1285 -1.4734 3.4240 11 6 7.8926 -2.6066 5.2275 12 7 7.0413 -3.1913 6.0434 13 14 9.7233 -2.6565 5.5952 14 1 10.4619 -1.9294 4.5317 15 1 9.9825 -2.0108 6.9072 16 1 10.1810 -4.0686 5.6395 17 7 2.0184 -0.6907 -1.1961 18 6 2.1472 -0.0184 -2.3571 19 8 1.8581 1.1625 -2.4117 20 6 2.6357 -0.7100 -3.5548 21 6 2.8103 -0.1510 -4.8049 22 6 3.2916 -1.1586 -5.6371 23 6 3.3927 -2.2985 -4.9030 24 7 2.9979 -2.0371 -3.6376 25 1 2.9741 -2.6766 -2.9087 26 6 3.8723 -3.6178 -5.4597 27 6 3.8060 -3.5505 -6.9901 28 6 4.4982 -2.2746 -7.4769 29 6 3.6469 -1.0560 -7.0994 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.7516 -1.7714 1.2057 34 1 1.6054 -0.2615 2.1370 35 1 3.8532 0.4371 1.3574 36 1 3.9995 -1.0728 0.4261 37 1 3.6400 -0.8739 3.4508 38 1 3.7863 -2.3841 2.5203 39 1 6.0340 -1.6866 1.7401 40 1 5.8883 -0.1762 2.6705 41 1 5.4604 -2.3468 4.4258 42 1 7.3645 -3.6479 6.8359 43 1 2.2491 -1.6319 -1.1525 44 1 2.6130 0.8734 -5.0840 45 1 4.9002 -3.7973 -5.1446 46 1 3.2317 -4.4229 -5.0997 47 1 2.7634 -3.5422 -7.3083 48 1 4.3080 -4.4203 -7.4137 49 1 4.6147 -2.3150 -8.5598 50 1 5.4789 -2.1919 -7.0085 51 1 2.7365 -1.0443 -7.6986 52 1 4.2149 -0.1426 -7.2760 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001176050108.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:15:05 Heat of formation + Delta-G solvation = -44.857954 kcal Electronic energy + Delta-G solvation = -27857.622865 eV Core-core repulsion = 24048.201611 eV Total energy + Delta-G solvation = -3809.421253 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.60867 -40.58393 -38.08295 -37.16822 -36.86159 -34.83444 -33.23515 -32.99185 -31.84574 -30.08720 -29.50889 -28.85156 -26.04096 -25.28967 -23.80939 -23.29136 -22.41226 -22.07259 -21.72074 -21.14861 -19.46223 -19.36961 -19.13761 -17.40815 -16.86167 -16.70816 -16.39146 -16.25052 -15.77679 -15.46055 -15.30285 -15.17593 -14.81707 -14.76088 -14.62921 -14.39074 -14.21249 -14.09627 -13.94394 -13.49805 -13.33480 -13.24979 -13.05803 -12.92413 -12.89107 -12.66991 -12.50103 -12.32548 -12.13495 -11.92006 -11.86383 -11.66763 -11.55844 -11.55138 -11.44298 -11.34871 -11.19487 -10.97740 -10.23510 -9.79805 -9.04456 -8.91768 -7.99310 -5.28712 0.40445 1.45012 1.46138 1.56461 1.66388 1.99189 2.15255 2.33385 2.52989 3.34050 3.54057 3.75830 3.85328 3.98079 3.99190 4.01085 4.08248 4.10935 4.18609 4.31017 4.37494 4.39645 4.53427 4.56409 4.61018 4.68291 4.70333 4.72943 4.73541 4.83611 4.88464 4.94305 4.97187 4.98508 5.05353 5.10210 5.12281 5.21352 5.24133 5.28358 5.31837 5.37239 5.39087 5.43051 5.49145 5.51715 5.53022 5.84270 5.93025 6.23838 6.39570 6.56201 7.10927 7.29498 8.05520 8.29359 9.24440 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.009898 B = 0.002156 C = 0.001853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2828.275885 B =12981.990839 C =15103.805915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.144 3.856 3 H 0.069 0.931 4 C -0.116 4.116 5 C -0.105 4.105 6 C -0.111 4.111 7 C 0.148 3.852 8 N -0.749 5.749 9 C -0.250 4.250 10 H 0.072 0.928 11 C -0.077 4.077 12 N -0.969 5.969 13 Si 0.976 3.024 14 H -0.268 1.268 15 H -0.291 1.291 16 H -0.289 1.289 17 N -0.711 5.711 18 C 0.590 3.410 19 O -0.576 6.576 20 C -0.078 4.078 21 C -0.117 4.117 22 C -0.193 4.193 23 C 0.061 3.939 24 N -0.519 5.519 25 H 0.427 0.573 26 C -0.055 4.055 27 C -0.111 4.111 28 C -0.119 4.119 29 C -0.048 4.048 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.041 0.959 33 H 0.085 0.915 34 H 0.090 0.910 35 H 0.054 0.946 36 H 0.062 0.938 37 H 0.058 0.942 38 H 0.064 0.936 39 H 0.017 0.983 40 H 0.011 0.989 41 H 0.375 0.625 42 H 0.253 0.747 43 H 0.406 0.594 44 H 0.136 0.864 45 H 0.089 0.911 46 H 0.093 0.907 47 H 0.067 0.933 48 H 0.089 0.911 49 H 0.081 0.919 50 H 0.060 0.940 51 H 0.073 0.927 52 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.852 -1.398 -27.920 31.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.040 3.960 3 H 0.088 0.912 4 C -0.153 4.153 5 C -0.143 4.143 6 C -0.149 4.149 7 C 0.022 3.978 8 N -0.391 5.391 9 C -0.381 4.381 10 H 0.090 0.910 11 C -0.269 4.269 12 N -0.619 5.619 13 Si 0.804 3.196 14 H -0.192 1.192 15 H -0.218 1.218 16 H -0.216 1.216 17 N -0.362 5.362 18 C 0.379 3.621 19 O -0.456 6.456 20 C -0.191 4.191 21 C -0.144 4.144 22 C -0.198 4.198 23 C -0.058 4.058 24 N -0.116 5.116 25 H 0.267 0.733 26 C -0.093 4.093 27 C -0.149 4.149 28 C -0.156 4.156 29 C -0.086 4.086 30 H 0.089 0.911 31 H 0.098 0.902 32 H 0.060 0.940 33 H 0.104 0.896 34 H 0.108 0.892 35 H 0.073 0.927 36 H 0.081 0.919 37 H 0.077 0.923 38 H 0.083 0.917 39 H 0.035 0.965 40 H 0.029 0.971 41 H 0.206 0.794 42 H 0.062 0.938 43 H 0.242 0.758 44 H 0.154 0.846 45 H 0.108 0.892 46 H 0.111 0.889 47 H 0.085 0.915 48 H 0.107 0.893 49 H 0.099 0.901 50 H 0.078 0.922 51 H 0.092 0.908 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -13.914 -0.582 -27.795 31.089 hybrid contribution 0.844 -0.489 1.283 1.612 sum -13.070 -1.071 -26.512 29.578 Atomic orbital electron populations 1.22117 0.94142 1.02908 1.02352 1.21027 0.94613 0.96804 0.83561 0.91234 1.21853 0.94631 1.02034 0.96821 1.21427 0.95866 1.00194 0.96863 1.21592 0.93669 1.00986 0.98674 1.20851 0.94308 0.94232 0.88452 1.42629 1.04544 1.65437 1.26529 1.19676 0.85297 1.27747 1.05413 0.90975 1.25618 1.02323 1.01177 0.97780 1.69817 1.34639 1.41955 1.15534 0.85044 0.79780 0.77154 0.77599 1.19209 1.21827 1.21610 1.45899 1.67006 1.14152 1.09177 1.17223 0.76786 0.85754 0.82367 1.90806 1.52903 1.16667 1.85196 1.20214 1.17197 0.85475 0.96221 1.21153 1.02228 0.99689 0.91355 1.19595 1.09911 0.92600 0.97742 1.21003 1.02621 0.98414 0.83771 1.41673 1.50173 1.08831 1.10918 0.73307 1.20502 1.02073 0.90193 0.96544 1.21538 1.01750 0.98584 0.93017 1.21608 0.98563 0.93799 1.01674 1.20122 0.99891 0.99124 0.89439 0.91096 0.90183 0.93951 0.89603 0.89167 0.92695 0.91926 0.92276 0.91692 0.96539 0.97058 0.79356 0.93847 0.75776 0.84627 0.89236 0.88858 0.91469 0.89285 0.90084 0.92158 0.90816 0.91336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.61 9.48 71.98 0.68 -1.93 16 2 C 0.14 2.72 2.57 44.99 0.12 2.83 16 3 H 0.07 1.66 7.58 -2.38 -0.02 1.64 16 4 C -0.12 -1.99 4.75 30.60 0.15 -1.84 16 5 C -0.11 -2.44 5.10 30.60 0.16 -2.28 16 6 C -0.11 -3.37 5.33 30.60 0.16 -3.21 16 7 C 0.15 6.04 6.26 86.38 0.54 6.58 16 8 N -0.75 -39.17 5.60 -343.45 -1.92 -41.10 16 9 C -0.25 -14.34 9.99 84.03 0.84 -13.50 16 10 H 0.07 4.02 7.83 -2.91 -0.02 4.00 16 11 C -0.08 -4.48 5.50 84.86 0.47 -4.01 16 12 N -0.97 -59.76 13.06 21.65 0.28 -59.47 16 13 Si 0.98 46.56 29.55 68.60 2.03 48.58 16 14 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 15 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 16 H -0.29 -13.61 7.11 99.48 0.71 -12.91 16 17 N -0.71 -13.09 4.53 -446.48 -2.02 -15.11 16 18 C 0.59 14.67 7.75 86.45 0.67 15.34 16 19 O -0.58 -18.95 16.54 -4.34 -0.07 -19.02 16 20 C -0.08 -1.73 7.06 40.36 0.29 -1.45 16 21 C -0.12 -2.71 10.62 22.47 0.24 -2.47 16 22 C -0.19 -3.56 5.91 -20.11 -0.12 -3.68 16 23 C 0.06 0.94 7.02 41.63 0.29 1.23 16 24 N -0.52 -7.96 5.98 -171.31 -1.02 -8.99 16 25 H 0.43 3.99 8.19 -92.71 -0.76 3.23 16 26 C -0.06 -0.49 6.30 30.06 0.19 -0.30 16 27 C -0.11 -0.84 5.89 30.74 0.18 -0.66 16 28 C -0.12 -1.13 5.90 30.75 0.18 -0.95 16 29 C -0.05 -0.65 6.28 30.02 0.19 -0.46 16 30 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.06 1.40 7.75 -2.39 -0.02 1.38 16 37 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 39 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 40 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 41 H 0.37 20.53 7.67 -92.71 -0.71 19.82 16 42 H 0.25 14.97 8.31 -92.71 -0.77 14.20 16 43 H 0.41 5.22 7.73 -92.71 -0.72 4.51 16 44 H 0.14 3.26 8.06 -2.92 -0.02 3.23 16 45 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 46 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 47 H 0.07 0.54 8.11 -2.38 -0.02 0.52 16 48 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 49 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 50 H 0.06 0.65 8.11 -2.39 -0.02 0.63 16 51 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 52 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -75.60 417.92 1.22 -74.39 By element: Atomic # 1 Polarization: 32.75 SS G_CDS: -1.27 Total: 31.48 kcal Atomic # 6 Polarization: -15.98 SS G_CDS: 5.22 Total: -10.76 kcal Atomic # 7 Polarization: -119.98 SS G_CDS: -4.69 Total: -124.67 kcal Atomic # 8 Polarization: -18.95 SS G_CDS: -0.07 Total: -19.02 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 2.03 Total: 48.58 kcal Total: -75.60 1.22 -74.39 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176050108.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.530 kcal (2) G-P(sol) polarization free energy of solvation -75.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds