Wall clock time and date at job start Tue Mar 31 2020 17:15:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47099 * 2 1 4 4 C 1.53001 * 109.47167 * 120.00016 * 2 1 3 5 5 C 1.53000 * 109.47143 * 185.00271 * 4 2 1 6 6 C 1.53001 * 109.47143 * 179.97438 * 5 4 2 7 7 C 1.53002 * 109.47163 * 179.97438 * 6 5 4 8 8 N 1.46501 * 109.47098 * 180.02562 * 7 6 5 9 9 C 1.36936 * 119.99960 * 180.02562 * 8 7 6 10 10 H 1.07997 * 119.99689 * 0.02562 * 9 8 7 11 11 C 1.38812 * 119.99821 * 179.97438 * 9 8 7 12 12 N 1.31625 * 119.99653 * 180.02562 * 11 9 8 13 13 Si 1.86796 * 120.00335 * 0.02562 * 11 9 8 14 14 H 1.48505 * 109.47213 * 89.99677 * 13 11 9 15 15 H 1.48502 * 109.47373 * 210.00006 * 13 11 9 16 16 H 1.48505 * 109.47086 * 330.00026 * 13 11 9 17 17 N 1.46500 * 109.47178 * 239.99765 * 2 1 3 18 18 C 1.34783 * 119.99699 * 85.00136 * 17 2 1 19 19 O 1.21600 * 119.99735 * 359.97438 * 18 17 2 20 20 C 1.47436 * 119.99940 * 179.97438 * 18 17 2 21 21 C 1.39733 * 120.20471 * 359.97438 * 20 18 17 22 22 C 1.37747 * 119.92284 * 180.02562 * 21 20 18 23 23 C 1.38614 * 120.35302 * 359.97438 * 22 21 20 24 24 C 1.37955 * 120.42253 * 359.97438 * 23 22 21 25 25 C 1.38951 * 120.06129 * 0.27972 * 24 23 22 26 26 N 1.38884 * 120.17308 * 179.72495 * 25 24 23 27 27 C 1.46897 * 110.99760 * 299.99647 * 26 25 24 28 28 C 1.46900 * 110.99808 * 63.95200 * 26 25 24 29 29 H 1.08999 * 109.47120 * 299.99963 * 1 2 3 30 30 H 1.08997 * 109.46905 * 60.00020 * 1 2 3 31 31 H 1.09006 * 109.46751 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47187 * 305.00223 * 4 2 1 33 33 H 1.09005 * 109.47023 * 65.00037 * 4 2 1 34 34 H 1.08999 * 109.47088 * 299.99571 * 5 4 2 35 35 H 1.08993 * 109.47176 * 59.99616 * 5 4 2 36 36 H 1.08996 * 109.47417 * 300.00120 * 6 5 4 37 37 H 1.09005 * 109.47023 * 59.99766 * 6 5 4 38 38 H 1.08998 * 109.46869 * 299.99738 * 7 6 5 39 39 H 1.09000 * 109.46580 * 60.00047 * 7 6 5 40 40 H 0.97006 * 119.99998 * 359.97438 * 8 7 6 41 41 H 0.96998 * 119.99598 * 180.02562 * 12 11 9 42 42 H 0.96993 * 120.00107 * 264.99881 * 17 2 1 43 43 H 1.08001 * 120.04140 * 0.02562 * 21 20 18 44 44 H 1.08000 * 119.82456 * 180.02562 * 22 21 20 45 45 H 1.08003 * 119.78712 * 180.02562 * 23 22 21 46 46 H 1.08002 * 119.96502 * 179.97438 * 24 23 22 47 47 H 1.08999 * 109.47204 * 60.00388 * 27 26 25 48 48 H 1.09000 * 109.47377 * 179.97438 * 27 26 25 49 49 H 1.09000 * 109.47628 * 299.99861 * 27 26 25 50 50 H 1.08998 * 109.47304 * 60.00004 * 28 26 25 51 51 H 1.09003 * 109.46641 * 180.02562 * 28 26 25 52 52 H 1.08996 * 109.46920 * 299.99904 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.6132 1.3137 6 6 4.0748 -1.3339 2.5633 7 6 5.5997 -1.2265 2.6274 8 7 6.0880 -1.9171 3.8236 9 6 7.4301 -1.9534 4.0933 10 1 8.1284 -1.4725 3.4244 11 6 7.8927 -2.6073 5.2270 12 7 9.1827 -2.6418 5.4865 13 14 6.6847 -3.4384 6.3843 14 1 6.4801 -4.8463 5.9587 15 1 7.2262 -3.4129 7.7669 16 1 5.3874 -2.7166 6.3474 17 7 2.0184 -0.6907 -1.1961 18 6 2.1471 -0.0182 -2.3571 19 8 1.8574 1.1615 -2.4118 20 6 2.6391 -0.7131 -3.5608 21 6 2.9737 -2.0686 -3.5026 22 6 3.4333 -2.7119 -4.6306 23 6 3.5657 -2.0219 -5.8255 24 6 3.2386 -0.6838 -5.8995 25 6 2.7783 -0.0164 -4.7711 26 7 2.4537 1.3322 -4.8415 27 6 3.6171 2.1332 -5.2449 28 6 1.3210 1.5542 -5.7501 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.6054 -0.2618 2.1370 33 1 1.7517 -1.7716 1.2056 34 1 3.9995 -1.0728 0.4260 35 1 3.8532 0.4370 1.3573 36 1 3.6402 -0.8741 3.4508 37 1 3.7864 -2.3843 2.5201 38 1 6.0340 -1.6867 1.7399 39 1 5.8883 -0.1762 2.6705 40 1 5.4606 -2.3480 4.4250 41 1 9.5060 -3.0990 6.2785 42 1 2.2491 -1.6317 -1.1525 43 1 2.8720 -2.6112 -2.5744 44 1 3.6910 -3.7596 -4.5840 45 1 3.9266 -2.5355 -6.7045 46 1 3.3450 -0.1533 -6.8342 47 1 3.9619 1.8051 -6.2255 48 1 3.3352 3.1850 -5.2926 49 1 4.4175 2.0041 -4.5163 50 1 0.4522 1.0040 -5.3889 51 1 1.0881 2.6184 -5.7870 52 1 1.5827 1.2050 -6.7490 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001176816001.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:15:32 Heat of formation + Delta-G solvation = 7.672180 kcal Electronic energy + Delta-G solvation = -28386.709732 eV Core-core repulsion = 24579.566356 eV Total energy + Delta-G solvation = -3807.143376 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.77415 -39.13727 -36.90262 -36.80946 -35.32522 -33.28133 -32.21972 -31.06137 -30.26561 -30.15362 -27.87928 -27.72110 -25.13400 -24.37932 -23.90564 -22.09458 -21.43031 -20.87044 -20.74164 -20.49163 -18.19395 -17.46413 -16.86360 -16.46795 -15.80691 -15.47315 -15.25613 -15.02439 -14.79218 -14.75245 -14.52553 -14.10251 -14.05746 -13.58934 -13.50400 -13.28308 -12.97926 -12.89347 -12.68059 -12.66219 -12.42860 -12.29311 -12.18015 -11.98051 -11.87061 -11.61633 -11.59295 -11.40467 -11.10829 -10.85093 -10.79923 -10.37326 -10.29350 -10.07348 -9.89069 -9.56082 -9.38196 -9.13567 -9.02050 -8.86051 -8.57619 -7.19181 -5.73946 -3.08950 0.54510 0.87792 2.76356 3.06431 3.39046 3.41772 3.46573 3.52353 3.57494 4.39891 4.43667 4.57289 4.61669 4.63820 4.78977 4.90937 4.91931 4.96256 4.97692 5.01376 5.20012 5.22441 5.25530 5.28288 5.37649 5.41505 5.43760 5.52612 5.56681 5.60839 5.62795 5.63519 5.71429 5.82628 5.88067 5.92196 6.00004 6.03144 6.10189 6.11285 6.21403 6.22632 6.32887 6.41008 6.48484 6.60622 6.81561 6.85317 7.06820 7.47514 8.03427 8.26833 8.45539 9.25092 9.97602 10.18075 11.44696 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.014190 B = 0.002176 C = 0.002045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1972.683127 B =12865.927932 C =13685.476515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.144 3.856 3 H 0.089 0.911 4 C -0.127 4.127 5 C -0.114 4.114 6 C -0.129 4.129 7 C 0.156 3.844 8 N -0.758 5.758 9 C -0.243 4.243 10 H 0.089 0.911 11 C 0.001 3.999 12 N -0.936 5.936 13 Si 0.886 3.114 14 H -0.284 1.284 15 H -0.291 1.291 16 H -0.277 1.277 17 N -0.726 5.726 18 C 0.555 3.445 19 O -0.499 6.499 20 C -0.115 4.115 21 C -0.082 4.082 22 C -0.129 4.129 23 C -0.087 4.087 24 C -0.162 4.162 25 C 0.146 3.854 26 N -0.492 5.492 27 C 0.033 3.967 28 C 0.035 3.965 29 H 0.064 0.936 30 H 0.059 0.941 31 H 0.054 0.946 32 H 0.078 0.922 33 H 0.066 0.934 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.060 0.940 37 H 0.059 0.941 38 H 0.025 0.975 39 H 0.025 0.975 40 H 0.360 0.640 41 H 0.259 0.741 42 H 0.395 0.605 43 H 0.130 0.870 44 H 0.130 0.870 45 H 0.126 0.874 46 H 0.125 0.875 47 H 0.026 0.974 48 H 0.074 0.926 49 H 0.070 0.930 50 H 0.067 0.933 51 H 0.074 0.926 52 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.185 3.608 -25.878 33.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.040 3.960 3 H 0.107 0.893 4 C -0.165 4.165 5 C -0.152 4.152 6 C -0.167 4.167 7 C 0.029 3.971 8 N -0.404 5.404 9 C -0.373 4.373 10 H 0.107 0.893 11 C -0.195 4.195 12 N -0.584 5.584 13 Si 0.717 3.283 14 H -0.211 1.211 15 H -0.217 1.217 16 H -0.203 1.203 17 N -0.380 5.380 18 C 0.341 3.659 19 O -0.373 6.373 20 C -0.119 4.119 21 C -0.101 4.101 22 C -0.147 4.147 23 C -0.106 4.106 24 C -0.182 4.182 25 C 0.051 3.949 26 N -0.212 5.212 27 C -0.114 4.114 28 C -0.111 4.111 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.097 0.903 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.043 0.957 39 H 0.043 0.957 40 H 0.193 0.807 41 H 0.069 0.931 42 H 0.231 0.769 43 H 0.148 0.852 44 H 0.148 0.852 45 H 0.144 0.856 46 H 0.142 0.858 47 H 0.045 0.955 48 H 0.093 0.907 49 H 0.089 0.911 50 H 0.086 0.914 51 H 0.093 0.907 52 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -20.307 4.739 -25.455 32.906 hybrid contribution -0.271 -1.479 0.124 1.508 sum -20.578 3.260 -25.332 32.799 Atomic orbital electron populations 1.22171 0.95558 1.01901 1.02415 1.20976 0.93578 0.97743 0.83706 0.89294 1.21940 0.96776 1.00861 0.96921 1.21505 0.94054 1.01246 0.98401 1.21781 0.97243 1.00251 0.97455 1.20631 0.90816 0.95687 0.89952 1.42748 1.05228 1.66329 1.26081 1.19092 0.82288 1.29141 1.06733 0.89286 1.24696 0.95651 1.00836 0.98269 1.69711 1.11714 1.48358 1.28624 0.86509 0.80950 0.79776 0.81080 1.21112 1.21735 1.20348 1.46085 1.68264 1.13937 1.09711 1.17987 0.78488 0.86823 0.82617 1.90833 1.47651 1.14573 1.84214 1.20039 1.04174 0.93771 0.93927 1.21350 0.96644 0.93146 0.98944 1.21140 1.00369 1.00530 0.92655 1.21207 0.97298 0.93993 0.98057 1.21696 1.02115 0.95665 0.98743 1.18748 0.95007 0.89560 0.91616 1.59247 1.07135 1.03605 1.51227 1.22423 0.92368 0.97943 0.98670 1.22383 0.93295 1.02551 0.92872 0.91689 0.92209 0.92674 0.90311 0.91494 0.91949 0.91779 0.92128 0.92221 0.95749 0.95740 0.80747 0.93109 0.76945 0.85203 0.85184 0.85606 0.85751 0.95511 0.90700 0.91117 0.91387 0.90745 0.95595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.45 9.48 37.16 0.35 -1.09 16 2 C 0.14 1.42 2.57 -67.93 -0.17 1.24 16 3 H 0.09 1.05 7.58 -51.93 -0.39 0.66 16 4 C -0.13 -1.20 4.75 -26.73 -0.13 -1.33 16 5 C -0.11 -1.36 5.10 -26.73 -0.14 -1.49 16 6 C -0.13 -1.93 5.33 -26.73 -0.14 -2.07 16 7 C 0.16 3.10 6.26 -4.04 -0.03 3.08 16 8 N -0.76 -18.69 5.41 -59.91 -0.32 -19.01 16 9 C -0.24 -7.10 10.47 -15.06 -0.16 -7.26 16 10 H 0.09 2.78 8.06 -52.49 -0.42 2.36 16 11 C 0.00 0.03 5.50 -17.43 -0.10 -0.07 16 12 N -0.94 -29.96 13.97 55.49 0.78 -29.19 16 13 Si 0.89 22.47 27.74 -169.99 -4.71 17.76 16 14 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 15 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 16 H -0.28 -6.61 6.52 56.52 0.37 -6.24 16 17 N -0.73 -7.04 4.48 -54.88 -0.25 -7.28 16 18 C 0.55 6.65 7.73 -12.51 -0.10 6.56 16 19 O -0.50 -7.54 14.69 5.28 0.08 -7.46 16 20 C -0.12 -1.21 5.89 -104.80 -0.62 -1.83 16 21 C -0.08 -0.66 9.53 -39.20 -0.37 -1.04 16 22 C -0.13 -0.91 10.02 -39.62 -0.40 -1.31 16 23 C -0.09 -0.60 10.03 -39.55 -0.40 -1.00 16 24 C -0.16 -1.31 8.55 -39.42 -0.34 -1.65 16 25 C 0.15 1.50 4.72 -83.61 -0.39 1.10 16 26 N -0.49 -5.18 2.92 -186.64 -0.55 -5.72 16 27 C 0.03 0.29 9.34 60.06 0.56 0.85 16 28 C 0.04 0.30 9.38 60.06 0.56 0.86 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.73 7.75 -51.93 -0.40 0.33 16 35 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.36 8.57 5.53 -40.82 -0.23 8.35 16 41 H 0.26 7.86 8.31 -40.82 -0.34 7.52 16 42 H 0.40 3.04 6.63 -40.82 -0.27 2.77 16 43 H 0.13 0.79 6.40 -52.49 -0.34 0.45 16 44 H 0.13 0.65 8.06 -52.49 -0.42 0.22 16 45 H 0.13 0.59 8.06 -52.48 -0.42 0.17 16 46 H 0.12 0.83 7.01 -52.49 -0.37 0.46 16 47 H 0.03 0.19 7.11 -51.93 -0.37 -0.18 16 48 H 0.07 0.59 8.12 -51.93 -0.42 0.17 16 49 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 50 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 51 H 0.07 0.55 8.12 -51.93 -0.42 0.13 16 52 H 0.03 0.18 7.33 -51.93 -0.38 -0.20 16 LS Contribution 416.36 15.07 6.27 6.27 Total: -1.00 -35.40 416.36 -9.80 -45.20 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: -9.10 Total: 5.89 kcal Atomic # 6 Polarization: -4.46 SS G_CDS: -2.00 Total: -6.45 kcal Atomic # 7 Polarization: -60.87 SS G_CDS: -0.34 Total: -61.21 kcal Atomic # 8 Polarization: -7.54 SS G_CDS: 0.08 Total: -7.46 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -4.71 Total: 17.76 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -35.40 -9.80 -45.20 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176816001.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.870 kcal (2) G-P(sol) polarization free energy of solvation -35.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.198 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds