Wall clock time and date at job start Tue Mar 31 2020 17:15:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47099 * 2 1 4 4 C 1.53001 * 109.47167 * 120.00016 * 2 1 3 5 5 C 1.53000 * 109.47143 * 185.00271 * 4 2 1 6 6 C 1.53001 * 109.47143 * 179.97438 * 5 4 2 7 7 C 1.53002 * 109.47163 * 179.97438 * 6 5 4 8 8 N 1.46501 * 109.47098 * 180.02562 * 7 6 5 9 9 C 1.36936 * 119.99960 * 180.02562 * 8 7 6 10 10 H 1.07997 * 119.99689 * 0.02562 * 9 8 7 11 11 C 1.38812 * 119.99821 * 179.97438 * 9 8 7 12 12 N 1.31625 * 119.99653 * 180.02562 * 11 9 8 13 13 Si 1.86796 * 120.00335 * 0.02562 * 11 9 8 14 14 H 1.48505 * 109.47213 * 89.99677 * 13 11 9 15 15 H 1.48502 * 109.47373 * 210.00006 * 13 11 9 16 16 H 1.48505 * 109.47086 * 330.00026 * 13 11 9 17 17 N 1.46500 * 109.47178 * 239.99765 * 2 1 3 18 18 C 1.34783 * 119.99699 * 85.00136 * 17 2 1 19 19 O 1.21600 * 119.99735 * 359.97438 * 18 17 2 20 20 C 1.47436 * 119.99940 * 179.97438 * 18 17 2 21 21 C 1.39733 * 120.20471 * 359.97438 * 20 18 17 22 22 C 1.37747 * 119.92284 * 180.02562 * 21 20 18 23 23 C 1.38614 * 120.35302 * 359.97438 * 22 21 20 24 24 C 1.37955 * 120.42253 * 359.97438 * 23 22 21 25 25 C 1.38951 * 120.06129 * 0.27972 * 24 23 22 26 26 N 1.38884 * 120.17308 * 179.72495 * 25 24 23 27 27 C 1.46897 * 110.99760 * 299.99647 * 26 25 24 28 28 C 1.46900 * 110.99808 * 63.95200 * 26 25 24 29 29 H 1.08999 * 109.47120 * 299.99963 * 1 2 3 30 30 H 1.08997 * 109.46905 * 60.00020 * 1 2 3 31 31 H 1.09006 * 109.46751 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47187 * 305.00223 * 4 2 1 33 33 H 1.09005 * 109.47023 * 65.00037 * 4 2 1 34 34 H 1.08999 * 109.47088 * 299.99571 * 5 4 2 35 35 H 1.08993 * 109.47176 * 59.99616 * 5 4 2 36 36 H 1.08996 * 109.47417 * 300.00120 * 6 5 4 37 37 H 1.09005 * 109.47023 * 59.99766 * 6 5 4 38 38 H 1.08998 * 109.46869 * 299.99738 * 7 6 5 39 39 H 1.09000 * 109.46580 * 60.00047 * 7 6 5 40 40 H 0.97006 * 119.99998 * 359.97438 * 8 7 6 41 41 H 0.96998 * 119.99598 * 180.02562 * 12 11 9 42 42 H 0.96993 * 120.00107 * 264.99881 * 17 2 1 43 43 H 1.08001 * 120.04140 * 0.02562 * 21 20 18 44 44 H 1.08000 * 119.82456 * 180.02562 * 22 21 20 45 45 H 1.08003 * 119.78712 * 180.02562 * 23 22 21 46 46 H 1.08002 * 119.96502 * 179.97438 * 24 23 22 47 47 H 1.08999 * 109.47204 * 60.00388 * 27 26 25 48 48 H 1.09000 * 109.47377 * 179.97438 * 27 26 25 49 49 H 1.09000 * 109.47628 * 299.99861 * 27 26 25 50 50 H 1.08998 * 109.47304 * 60.00004 * 28 26 25 51 51 H 1.09003 * 109.46641 * 180.02562 * 28 26 25 52 52 H 1.08996 * 109.46920 * 299.99904 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.6132 1.3137 6 6 4.0748 -1.3339 2.5633 7 6 5.5997 -1.2265 2.6274 8 7 6.0880 -1.9171 3.8236 9 6 7.4301 -1.9534 4.0933 10 1 8.1284 -1.4725 3.4244 11 6 7.8927 -2.6073 5.2270 12 7 9.1827 -2.6418 5.4865 13 14 6.6847 -3.4384 6.3843 14 1 6.4801 -4.8463 5.9587 15 1 7.2262 -3.4129 7.7669 16 1 5.3874 -2.7166 6.3474 17 7 2.0184 -0.6907 -1.1961 18 6 2.1471 -0.0182 -2.3571 19 8 1.8574 1.1615 -2.4118 20 6 2.6391 -0.7131 -3.5608 21 6 2.9737 -2.0686 -3.5026 22 6 3.4333 -2.7119 -4.6306 23 6 3.5657 -2.0219 -5.8255 24 6 3.2386 -0.6838 -5.8995 25 6 2.7783 -0.0164 -4.7711 26 7 2.4537 1.3322 -4.8415 27 6 3.6171 2.1332 -5.2449 28 6 1.3210 1.5542 -5.7501 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.6054 -0.2618 2.1370 33 1 1.7517 -1.7716 1.2056 34 1 3.9995 -1.0728 0.4260 35 1 3.8532 0.4370 1.3573 36 1 3.6402 -0.8741 3.4508 37 1 3.7864 -2.3843 2.5201 38 1 6.0340 -1.6867 1.7399 39 1 5.8883 -0.1762 2.6705 40 1 5.4606 -2.3480 4.4250 41 1 9.5060 -3.0990 6.2785 42 1 2.2491 -1.6317 -1.1525 43 1 2.8720 -2.6112 -2.5744 44 1 3.6910 -3.7596 -4.5840 45 1 3.9266 -2.5355 -6.7045 46 1 3.3450 -0.1533 -6.8342 47 1 3.9619 1.8051 -6.2255 48 1 3.3352 3.1850 -5.2926 49 1 4.4175 2.0041 -4.5163 50 1 0.4522 1.0040 -5.3889 51 1 1.0881 2.6184 -5.7870 52 1 1.5827 1.2050 -6.7490 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001176816001.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:15:30 Heat of formation + Delta-G solvation = -14.446015 kcal Electronic energy + Delta-G solvation = -28387.668849 eV Core-core repulsion = 24579.566356 eV Total energy + Delta-G solvation = -3808.102493 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.49016 -39.91444 -37.94618 -37.52898 -36.82205 -34.74144 -33.40152 -32.57420 -31.05409 -30.86770 -29.03594 -28.54498 -25.97426 -25.58805 -24.79817 -23.49279 -22.45696 -22.11013 -21.47910 -21.33276 -19.62613 -18.87542 -17.58722 -17.22168 -16.63553 -16.56925 -16.26376 -16.06136 -15.95316 -15.75485 -15.52148 -15.36505 -14.87804 -14.79647 -14.55667 -14.33197 -14.24609 -14.08944 -13.61993 -13.43822 -13.26658 -13.05987 -12.98314 -12.95335 -12.91663 -12.76665 -12.68702 -12.44646 -12.28436 -12.18611 -12.03145 -11.88149 -11.76208 -11.48610 -11.41823 -10.97399 -10.78450 -10.07097 -9.87708 -9.68313 -9.31554 -9.24701 -8.04177 -5.38554 -0.11349 0.28838 1.37751 1.42590 1.50241 2.02379 2.29329 2.48368 2.87370 2.88657 3.26647 3.49834 3.79748 3.85653 3.95350 4.05920 4.09065 4.11228 4.15175 4.31000 4.33517 4.36692 4.41886 4.44101 4.55672 4.58668 4.60906 4.65338 4.66664 4.79778 4.85113 4.88827 4.91389 4.91910 4.94183 4.99372 5.04210 5.15132 5.25253 5.27446 5.34715 5.38556 5.45227 5.46463 5.51264 5.68896 5.73556 5.78059 5.96212 6.20173 6.41075 6.71342 7.06687 7.43816 7.82685 8.03589 9.17523 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.014190 B = 0.002176 C = 0.002045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1972.683127 B =12865.927932 C =13685.476515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.146 3.854 3 H 0.064 0.936 4 C -0.115 4.115 5 C -0.107 4.107 6 C -0.115 4.115 7 C 0.150 3.850 8 N -0.760 5.760 9 C -0.242 4.242 10 H 0.051 0.949 11 C -0.069 4.069 12 N -0.985 5.985 13 Si 0.963 3.037 14 H -0.274 1.274 15 H -0.295 1.295 16 H -0.249 1.249 17 N -0.716 5.716 18 C 0.551 3.449 19 O -0.541 6.541 20 C -0.144 4.144 21 C -0.083 4.083 22 C -0.131 4.131 23 C -0.082 4.082 24 C -0.167 4.167 25 C 0.128 3.872 26 N -0.517 5.517 27 C 0.036 3.964 28 C 0.039 3.961 29 H 0.076 0.924 30 H 0.038 0.962 31 H 0.069 0.931 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.063 0.937 35 H 0.051 0.949 36 H 0.065 0.935 37 H 0.073 0.927 38 H 0.021 0.979 39 H 0.013 0.987 40 H 0.368 0.632 41 H 0.259 0.741 42 H 0.407 0.593 43 H 0.148 0.852 44 H 0.156 0.844 45 H 0.153 0.847 46 H 0.137 0.863 47 H 0.043 0.957 48 H 0.079 0.921 49 H 0.052 0.948 50 H 0.055 0.945 51 H 0.078 0.922 52 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.425 1.547 -26.277 34.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.042 3.958 3 H 0.082 0.918 4 C -0.153 4.153 5 C -0.145 4.145 6 C -0.153 4.153 7 C 0.024 3.976 8 N -0.406 5.406 9 C -0.373 4.373 10 H 0.069 0.931 11 C -0.260 4.260 12 N -0.636 5.636 13 Si 0.789 3.211 14 H -0.200 1.200 15 H -0.221 1.221 16 H -0.174 1.174 17 N -0.371 5.371 18 C 0.338 3.662 19 O -0.419 6.419 20 C -0.148 4.148 21 C -0.102 4.102 22 C -0.149 4.149 23 C -0.101 4.101 24 C -0.187 4.187 25 C 0.032 3.968 26 N -0.238 5.238 27 C -0.111 4.111 28 C -0.107 4.107 29 H 0.094 0.906 30 H 0.058 0.942 31 H 0.088 0.912 32 H 0.107 0.893 33 H 0.105 0.895 34 H 0.082 0.918 35 H 0.070 0.930 36 H 0.084 0.916 37 H 0.092 0.908 38 H 0.039 0.961 39 H 0.031 0.969 40 H 0.201 0.799 41 H 0.068 0.932 42 H 0.244 0.756 43 H 0.166 0.834 44 H 0.173 0.827 45 H 0.171 0.829 46 H 0.155 0.845 47 H 0.062 0.938 48 H 0.098 0.902 49 H 0.071 0.929 50 H 0.074 0.926 51 H 0.097 0.903 52 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -22.585 2.667 -25.880 34.452 hybrid contribution 0.521 -0.802 0.141 0.966 sum -22.065 1.866 -25.738 33.953 Atomic orbital electron populations 1.22095 0.94539 1.02689 1.01982 1.20915 0.94289 0.96611 0.83993 0.91824 1.21844 0.94517 1.02094 0.96841 1.21423 0.95968 1.00109 0.97032 1.21661 0.93074 1.01588 0.98984 1.20842 0.94505 0.94312 0.87950 1.42753 1.03480 1.66770 1.27623 1.19060 0.84020 1.28156 1.06018 0.93126 1.25638 0.97790 1.02112 1.00454 1.69909 1.14307 1.49842 1.29504 0.85291 0.79172 0.78928 0.77679 1.19956 1.22135 1.17375 1.46019 1.67528 1.14384 1.09127 1.18336 0.77850 0.86490 0.83510 1.90799 1.49750 1.16349 1.84956 1.20125 1.06122 0.94994 0.93552 1.21587 0.96051 0.92231 1.00290 1.21496 0.99475 1.01726 0.92196 1.21586 0.95902 0.93545 0.99072 1.21852 1.01998 0.96355 0.98540 1.18977 0.95790 0.89626 0.92369 1.59188 1.07936 1.04303 1.52378 1.22380 0.91626 0.98188 0.98875 1.22352 0.92390 1.02694 0.93272 0.90558 0.94231 0.91187 0.89302 0.89477 0.91846 0.92968 0.91633 0.90830 0.96130 0.96851 0.79885 0.93237 0.75593 0.83416 0.82657 0.82914 0.84494 0.93839 0.90247 0.92917 0.92561 0.90346 0.93962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.55 9.48 71.98 0.68 -1.87 16 2 C 0.15 2.73 2.57 44.99 0.12 2.85 16 3 H 0.06 1.54 7.58 -2.39 -0.02 1.52 16 4 C -0.12 -1.86 4.75 30.59 0.15 -1.72 16 5 C -0.11 -2.36 5.10 30.59 0.16 -2.20 16 6 C -0.12 -3.14 5.33 30.60 0.16 -2.98 16 7 C 0.15 5.83 6.26 86.38 0.54 6.37 16 8 N -0.76 -36.61 5.41 -343.45 -1.86 -38.47 16 9 C -0.24 -14.32 10.47 84.03 0.88 -13.44 16 10 H 0.05 3.31 8.06 -2.91 -0.02 3.28 16 11 C -0.07 -4.14 5.50 84.86 0.47 -3.68 16 12 N -0.99 -64.37 13.97 21.65 0.30 -64.07 16 13 Si 0.96 45.67 27.74 68.60 1.90 47.58 16 14 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 15 H -0.29 -14.10 7.11 99.48 0.71 -13.40 16 16 H -0.25 -10.57 6.52 99.48 0.65 -9.92 16 17 N -0.72 -13.33 4.48 -445.79 -2.00 -15.33 16 18 C 0.55 13.49 7.73 86.67 0.67 14.16 16 19 O -0.54 -17.24 14.69 -4.03 -0.06 -17.30 16 20 C -0.14 -3.01 5.89 -19.98 -0.12 -3.13 16 21 C -0.08 -1.21 9.53 22.52 0.21 -1.00 16 22 C -0.13 -1.52 10.02 22.24 0.22 -1.30 16 23 C -0.08 -0.95 10.03 22.29 0.22 -0.72 16 24 C -0.17 -2.50 8.55 22.37 0.19 -2.31 16 25 C 0.13 2.62 4.72 38.71 0.18 2.80 16 26 N -0.52 -11.22 2.92 -744.40 -2.17 -13.39 16 27 C 0.04 0.65 9.34 127.69 1.19 1.84 16 28 C 0.04 0.66 9.38 127.69 1.20 1.86 16 29 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 32 H 0.09 1.32 8.14 -2.38 -0.02 1.31 16 33 H 0.09 1.12 8.14 -2.38 -0.02 1.10 16 34 H 0.06 1.38 7.75 -2.39 -0.02 1.37 16 35 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.07 1.84 8.14 -2.38 -0.02 1.82 16 38 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 40 H 0.37 16.47 5.53 -92.70 -0.51 15.96 16 41 H 0.26 15.99 8.31 -92.71 -0.77 15.22 16 42 H 0.41 5.49 6.63 -92.71 -0.61 4.88 16 43 H 0.15 1.46 6.40 -2.91 -0.02 1.44 16 44 H 0.16 0.99 8.06 -2.91 -0.02 0.96 16 45 H 0.15 0.89 8.06 -2.91 -0.02 0.87 16 46 H 0.14 1.59 7.01 -2.91 -0.02 1.57 16 47 H 0.04 0.61 7.11 -2.39 -0.02 0.59 16 48 H 0.08 1.30 8.12 -2.39 -0.02 1.28 16 49 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 50 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 51 H 0.08 1.20 8.12 -2.39 -0.02 1.18 16 52 H 0.04 0.55 7.33 -2.39 -0.02 0.53 16 Total: -1.00 -79.35 416.36 2.96 -76.39 By element: Atomic # 1 Polarization: 29.33 SS G_CDS: -0.29 Total: 29.04 kcal Atomic # 6 Polarization: -11.58 SS G_CDS: 7.13 Total: -4.45 kcal Atomic # 7 Polarization: -125.53 SS G_CDS: -5.73 Total: -131.25 kcal Atomic # 8 Polarization: -17.24 SS G_CDS: -0.06 Total: -17.30 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 1.90 Total: 47.58 kcal Total: -79.35 2.96 -76.39 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176816001.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.946 kcal (2) G-P(sol) polarization free energy of solvation -79.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds