Wall clock time and date at job start Tue Mar 31 2020 18:37:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.35535 * 125.67920 * 2 1 4 4 C 1.35452 * 108.87537 * 179.97438 * 3 2 1 5 5 C 1.39841 * 107.86101 * 359.74290 * 4 3 2 6 6 C 1.37649 * 125.68270 * 179.97438 * 2 1 3 7 7 C 1.46684 * 126.23055 * 0.02562 * 6 2 1 8 8 O 1.21690 * 119.99907 * 229.11638 * 7 6 2 9 9 N 1.34778 * 119.99805 * 49.11403 * 7 6 2 10 10 C 1.46496 * 120.00064 * 353.75949 * 9 7 6 11 11 C 1.53002 * 109.47421 * 241.23464 * 10 9 7 12 12 C 1.53000 * 109.47457 * 185.98946 * 11 10 9 13 13 N 1.46496 * 109.47077 * 185.16344 * 12 11 10 14 14 C 1.36936 * 119.99881 * 179.97438 * 13 12 11 15 15 H 1.08002 * 120.00275 * 0.02562 * 14 13 12 16 16 C 1.38811 * 120.00139 * 179.97438 * 14 13 12 17 17 N 1.31615 * 120.00074 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00207 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47666 * 89.99820 * 18 16 14 20 20 H 1.48502 * 109.47352 * 210.00056 * 18 16 14 21 21 H 1.48500 * 109.47259 * 329.99671 * 18 16 14 22 22 C 1.46501 * 119.99961 * 173.75993 * 9 7 6 23 23 C 1.52993 * 109.47425 * 273.68678 * 22 9 7 24 24 C 1.54891 * 110.48553 * 67.03975 * 23 22 9 25 25 C 1.55244 * 102.58656 * 156.67790 * 24 23 22 26 26 C 1.54260 * 104.23011 * 322.08387 * 25 24 23 27 27 C 1.53877 * 106.60002 * 23.61341 * 26 25 24 28 28 H 1.09003 * 109.46964 * 203.60464 * 1 2 3 29 29 H 1.09001 * 109.46913 * 323.60791 * 1 2 3 30 30 H 1.09002 * 109.47007 * 83.60772 * 1 2 3 31 31 H 1.08005 * 125.56336 * 359.95591 * 3 2 1 32 32 H 1.07999 * 126.06944 * 179.97438 * 4 3 2 33 33 H 1.08002 * 126.45098 * 180.26753 * 5 4 3 34 34 H 1.08997 * 109.47556 * 1.23277 * 10 9 7 35 35 H 1.09000 * 109.47153 * 121.23438 * 10 9 7 36 36 H 1.09005 * 109.47030 * 305.98743 * 11 10 9 37 37 H 1.09000 * 109.47132 * 65.98208 * 11 10 9 38 38 H 1.09007 * 109.46470 * 305.16259 * 12 11 10 39 39 H 1.08996 * 109.46810 * 65.15952 * 12 11 10 40 40 H 0.96993 * 120.00466 * 359.97438 * 13 12 11 41 41 H 0.96996 * 120.00266 * 180.02562 * 17 16 14 42 42 H 1.08998 * 109.47051 * 153.68105 * 22 9 7 43 43 H 1.09002 * 109.46906 * 33.69170 * 22 9 7 44 44 H 1.09005 * 110.43572 * 304.50247 * 23 22 9 45 45 H 1.09000 * 110.76107 * 275.06997 * 24 23 22 46 46 H 1.09000 * 110.75577 * 38.44469 * 24 23 22 47 47 H 1.09005 * 110.46467 * 203.39384 * 25 24 23 48 48 H 1.09005 * 110.58023 * 80.83472 * 25 24 23 49 49 H 1.08997 * 110.03816 * 264.32264 * 26 25 24 50 50 H 1.09001 * 110.06944 * 142.91878 * 26 25 24 51 51 H 1.09001 * 110.02945 * 240.70924 * 27 26 25 52 52 H 1.09004 * 110.03351 * 119.28314 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2555 1.1009 0.0000 4 6 3.5522 0.7094 0.0006 5 6 3.5780 -0.6888 0.0069 6 6 2.2679 -1.1181 0.0005 7 6 1.8125 -2.5124 0.0006 8 8 2.2790 -3.3048 0.7977 9 7 0.8773 -2.9160 -0.8821 10 6 0.2169 -1.9366 -1.7486 11 6 -1.2864 -1.9354 -1.4638 12 6 -1.9951 -1.0243 -2.4681 13 7 -3.4148 -0.9257 -2.1207 14 6 -4.2546 -0.1584 -2.8831 15 1 -3.8703 0.3738 -3.7407 16 6 -5.5999 -0.0653 -2.5542 17 7 -6.0686 -0.7150 -1.5100 18 14 -6.7456 0.9808 -3.5946 19 1 -7.3240 0.1506 -4.6815 20 1 -7.8394 1.5137 -2.7432 21 1 -5.9841 2.1101 -4.1863 22 6 0.5213 -4.3340 -0.9751 23 6 1.4807 -5.0388 -1.9361 24 6 2.9122 -5.0723 -1.3454 25 6 3.5547 -6.2775 -2.0836 26 6 2.4151 -7.3125 -2.1831 27 6 1.0965 -6.5249 -2.0894 28 1 -0.3633 -0.9417 0.4115 29 1 -0.3633 0.8273 0.6097 30 1 -0.3633 0.1144 -1.0213 31 1 1.9082 2.1236 -0.0007 32 1 4.4133 1.3612 0.0003 33 1 4.4584 -1.3143 0.0130 34 1 0.6245 -0.9448 -1.5527 35 1 0.3888 -2.2004 -2.7921 36 1 -1.6746 -2.9498 -1.5567 37 1 -1.4644 -1.5695 -0.4526 38 1 -1.5442 -0.0323 -2.4396 39 1 -1.8943 -1.4406 -3.4703 40 1 -3.7601 -1.4039 -1.3507 41 1 -7.0088 -0.6503 -1.2804 42 1 -0.4992 -4.4288 -1.3460 43 1 0.5933 -4.7921 0.0113 44 1 1.4801 -4.5425 -2.9066 45 1 3.4452 -4.1488 -1.5715 46 1 2.8823 -5.2491 -0.2702 47 1 4.3860 -6.6798 -1.5047 48 1 3.8906 -5.9829 -3.0779 49 1 2.4842 -8.0242 -1.3605 50 1 2.4693 -7.8379 -3.1366 51 1 0.5257 -6.8545 -1.2213 52 1 0.5111 -6.6674 -2.9977 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001177218271.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:01 Heat of formation + Delta-G solvation = 42.447912 kcal Electronic energy + Delta-G solvation = -29984.423448 eV Core-core repulsion = 26178.788061 eV Total energy + Delta-G solvation = -3805.635387 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.74310 -39.67203 -37.83609 -36.93272 -34.77500 -33.23343 -32.10185 -30.83564 -29.75065 -28.94288 -28.61095 -26.45248 -25.50738 -25.11154 -23.01521 -21.84402 -21.21656 -20.63511 -20.45753 -19.77633 -18.79969 -18.03286 -17.19840 -16.66308 -16.06442 -15.66462 -15.54051 -15.25256 -14.87831 -14.69507 -14.24112 -13.89878 -13.52711 -13.50545 -13.40504 -13.28113 -13.10231 -13.02757 -12.60022 -12.37493 -12.28569 -12.14747 -11.91717 -11.65608 -11.47514 -11.25731 -11.12500 -11.01887 -10.95832 -10.93930 -10.75859 -10.69005 -10.54281 -10.37769 -10.16491 -9.96935 -9.81490 -8.98976 -8.77517 -8.69198 -8.19731 -7.04927 -5.86675 -3.16686 1.63839 2.51603 2.82210 2.84188 3.24868 3.36938 3.42476 3.43931 4.38701 4.48431 4.53254 4.55318 4.63282 4.68760 4.84655 4.99969 5.05207 5.09700 5.12618 5.29644 5.34887 5.40106 5.42032 5.44168 5.45034 5.48013 5.49434 5.51372 5.57270 5.66476 5.72911 5.78103 5.80032 5.84324 5.90081 5.98585 6.07647 6.11078 6.12227 6.16893 6.18330 6.22966 6.34891 6.49368 6.62045 6.64488 6.76851 6.96393 7.14796 7.32019 7.60230 8.09708 8.31491 9.43138 9.98585 10.32932 11.35849 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.009991 B = 0.003341 C = 0.002633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2801.760577 B = 8377.921284 C =10630.336902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.426 5.426 3 C 0.010 3.990 4 C -0.209 4.209 5 C -0.131 4.131 6 C -0.047 4.047 7 C 0.592 3.408 8 O -0.527 6.527 9 N -0.602 5.602 10 C 0.083 3.917 11 C -0.156 4.156 12 C 0.156 3.844 13 N -0.732 5.732 14 C -0.244 4.244 15 H 0.071 0.929 16 C -0.011 4.011 17 N -0.932 5.932 18 Si 0.907 3.093 19 H -0.289 1.289 20 H -0.291 1.291 21 H -0.281 1.281 22 C 0.119 3.881 23 C -0.107 4.107 24 C -0.114 4.114 25 C -0.126 4.126 26 C -0.122 4.122 27 C -0.117 4.117 28 H 0.096 0.904 29 H 0.086 0.914 30 H 0.104 0.896 31 H 0.167 0.833 32 H 0.140 0.860 33 H 0.140 0.860 34 H 0.100 0.900 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.075 0.925 38 H 0.018 0.982 39 H 0.022 0.978 40 H 0.384 0.616 41 H 0.256 0.744 42 H 0.084 0.916 43 H 0.084 0.916 44 H 0.074 0.926 45 H 0.057 0.943 46 H 0.081 0.919 47 H 0.061 0.939 48 H 0.060 0.940 49 H 0.061 0.939 50 H 0.060 0.940 51 H 0.066 0.934 52 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.537 -5.175 0.928 20.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 N -0.101 5.101 3 C -0.124 4.124 4 C -0.234 4.234 5 C -0.157 4.157 6 C -0.160 4.160 7 C 0.379 3.621 8 O -0.402 6.402 9 N -0.333 5.333 10 C -0.040 4.040 11 C -0.195 4.195 12 C 0.028 3.972 13 N -0.376 5.376 14 C -0.375 4.375 15 H 0.089 0.911 16 C -0.208 4.208 17 N -0.580 5.580 18 Si 0.738 3.262 19 H -0.216 1.216 20 H -0.217 1.217 21 H -0.207 1.207 22 C -0.003 4.003 23 C -0.127 4.127 24 C -0.152 4.152 25 C -0.164 4.164 26 C -0.160 4.160 27 C -0.156 4.156 28 H 0.115 0.885 29 H 0.105 0.895 30 H 0.121 0.879 31 H 0.184 0.816 32 H 0.158 0.842 33 H 0.158 0.842 34 H 0.118 0.882 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.036 0.964 39 H 0.040 0.960 40 H 0.218 0.782 41 H 0.066 0.934 42 H 0.102 0.898 43 H 0.102 0.898 44 H 0.092 0.908 45 H 0.076 0.924 46 H 0.100 0.900 47 H 0.080 0.920 48 H 0.079 0.921 49 H 0.080 0.920 50 H 0.079 0.921 51 H 0.085 0.915 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 19.293 -5.539 1.236 20.110 hybrid contribution -0.978 0.547 -0.473 1.216 sum 18.315 -4.992 0.763 18.999 Atomic orbital electron populations 1.23263 0.75843 1.05437 1.05338 1.44341 1.06632 1.05354 1.53822 1.22000 0.90670 0.91672 1.08093 1.20781 0.95951 0.94808 1.11825 1.21117 0.94080 0.94954 1.05536 1.20346 0.91284 0.86522 1.17812 1.17172 0.78803 0.85898 0.80192 1.90797 1.56485 1.54582 1.38379 1.47914 1.39062 1.08232 1.38115 1.22324 0.93193 0.93663 0.94793 1.22496 0.93360 1.02184 1.01436 1.20587 0.86314 0.95170 0.95131 1.42329 1.02450 1.58358 1.34475 1.19202 0.89712 1.21389 1.07228 0.91139 1.24751 0.97062 1.00660 0.98279 1.69650 1.14117 1.46201 1.28026 0.86192 0.80745 0.79872 0.79374 1.21630 1.21712 1.20705 1.21610 0.98466 0.79618 1.00614 1.22386 0.95696 0.95505 0.99087 1.22659 0.94433 0.97316 1.00748 1.22429 0.97604 0.96110 1.00222 1.22099 0.94636 0.97890 1.01385 1.22116 0.97468 0.94037 1.01934 0.88527 0.89515 0.87854 0.81560 0.84200 0.84203 0.88194 0.90912 0.90961 0.90718 0.96431 0.96012 0.78233 0.93402 0.89765 0.89779 0.90761 0.92379 0.90046 0.92010 0.92093 0.91987 0.92140 0.91535 0.91700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.47 7.91 59.85 0.47 0.94 16 2 N -0.43 -5.15 2.51 -120.23 -0.30 -5.45 16 3 C 0.01 0.11 11.38 -16.91 -0.19 -0.09 16 4 C -0.21 -2.31 10.81 -39.98 -0.43 -2.74 16 5 C -0.13 -1.66 10.87 -39.12 -0.43 -2.08 16 6 C -0.05 -0.64 5.76 -81.98 -0.47 -1.11 16 7 C 0.59 8.46 6.09 -12.85 -0.08 8.38 16 8 O -0.53 -8.77 14.59 5.20 0.08 -8.69 16 9 N -0.60 -7.49 2.52 -175.23 -0.44 -7.93 16 10 C 0.08 1.00 4.65 -4.04 -0.02 0.98 16 11 C -0.16 -2.17 4.38 -26.73 -0.12 -2.29 16 12 C 0.16 2.76 6.06 -4.04 -0.02 2.73 16 13 N -0.73 -17.22 5.60 -59.91 -0.34 -17.55 16 14 C -0.24 -6.51 9.99 -15.06 -0.15 -6.66 16 15 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 16 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 17 N -0.93 -27.23 13.06 55.49 0.72 -26.50 16 18 Si 0.91 21.67 29.55 -169.99 -5.02 16.65 16 19 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 20 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 22 C 0.12 1.38 4.76 -4.05 -0.02 1.36 16 23 C -0.11 -1.13 3.10 -88.97 -0.28 -1.41 16 24 C -0.11 -1.29 4.80 -24.55 -0.12 -1.41 16 25 C -0.13 -1.20 6.84 -24.88 -0.17 -1.37 16 26 C -0.12 -1.08 6.80 -25.62 -0.17 -1.26 16 27 C -0.12 -1.10 6.37 -25.62 -0.16 -1.26 16 28 H 0.10 1.18 4.99 -51.93 -0.26 0.92 16 29 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.10 1.21 3.77 -51.93 -0.20 1.02 16 31 H 0.17 1.33 8.06 -52.48 -0.42 0.90 16 32 H 0.14 1.22 8.06 -52.49 -0.42 0.79 16 33 H 0.14 1.64 8.06 -52.49 -0.42 1.21 16 34 H 0.10 1.20 2.96 -51.93 -0.15 1.05 16 35 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.07 1.03 6.52 -51.93 -0.34 0.70 16 37 H 0.07 1.05 5.13 -51.93 -0.27 0.79 16 38 H 0.02 0.31 6.65 -51.93 -0.35 -0.04 16 39 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.38 9.58 7.67 -40.82 -0.31 9.26 16 41 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 42 H 0.08 0.93 6.41 -51.93 -0.33 0.60 16 43 H 0.08 1.05 7.40 -51.93 -0.38 0.67 16 44 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 45 H 0.06 0.71 7.92 -51.93 -0.41 0.30 16 46 H 0.08 1.07 6.72 -51.93 -0.35 0.72 16 47 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 48 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 49 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 50 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 51 H 0.07 0.61 7.84 -51.93 -0.41 0.20 16 52 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 LS Contribution 392.79 15.07 5.92 5.92 Total: -1.00 -31.01 392.79 -10.21 -41.23 By element: Atomic # 1 Polarization: 18.39 SS G_CDS: -8.37 Total: 10.02 kcal Atomic # 6 Polarization: -5.23 SS G_CDS: -2.45 Total: -7.68 kcal Atomic # 7 Polarization: -57.08 SS G_CDS: -0.35 Total: -57.44 kcal Atomic # 8 Polarization: -8.77 SS G_CDS: 0.08 Total: -8.69 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -31.01 -10.21 -41.23 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177218271.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.674 kcal (2) G-P(sol) polarization free energy of solvation -31.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.226 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds