Wall clock time and date at job start Tue Mar 31 2020 17:29:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.46965 * 2 1 4 4 C 1.53004 * 109.46993 * 240.00824 * 2 1 3 5 5 C 1.50703 * 109.47366 * 64.99456 * 4 2 1 6 6 O 1.21284 * 119.99673 * 359.97438 * 5 4 2 7 7 N 1.34773 * 120.00340 * 180.02562 * 5 4 2 8 8 C 1.46495 * 120.00211 * 180.02562 * 7 5 4 9 9 C 1.53006 * 109.46985 * 179.97438 * 8 7 5 10 10 C 1.53003 * 109.46979 * 180.02562 * 9 8 7 11 11 C 1.52998 * 109.47073 * 180.02562 * 10 9 8 12 12 C 1.52995 * 109.46974 * 180.02562 * 11 10 9 13 13 C 1.53006 * 109.46880 * 179.97438 * 12 11 10 14 14 N 1.46509 * 109.46912 * 179.97438 * 13 12 11 15 15 C 1.36937 * 119.99781 * 179.97438 * 14 13 12 16 16 H 1.08003 * 119.99683 * 0.02562 * 15 14 13 17 17 C 1.38811 * 119.99847 * 179.97438 * 15 14 13 18 18 N 1.31620 * 120.00149 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00001 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47076 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.47048 * 119.99942 * 19 17 15 22 22 H 1.48504 * 109.47351 * 240.00199 * 19 17 15 23 23 C 1.50690 * 109.47633 * 120.00533 * 2 1 3 24 24 C 1.38682 * 120.41929 * 239.72354 * 23 2 1 25 25 C 1.38625 * 118.41677 * 180.27483 * 24 23 2 26 26 C 1.38221 * 119.16809 * 0.02562 * 25 24 23 27 27 N 1.31860 * 120.76138 * 359.97438 * 26 25 24 28 28 C 1.31881 * 121.72574 * 359.97438 * 27 26 25 29 29 H 1.09003 * 109.46965 * 180.02562 * 1 2 3 30 30 H 1.09012 * 109.46797 * 299.99398 * 1 2 3 31 31 H 1.08998 * 109.47629 * 59.98907 * 1 2 3 32 32 H 1.08996 * 109.46945 * 184.99622 * 4 2 1 33 33 H 1.09004 * 109.46818 * 304.99675 * 4 2 1 34 34 H 0.97006 * 119.99426 * 359.97438 * 7 5 4 35 35 H 1.08996 * 109.47238 * 299.99597 * 8 7 5 36 36 H 1.09004 * 109.47088 * 59.99995 * 8 7 5 37 37 H 1.09004 * 109.47147 * 299.99864 * 9 8 7 38 38 H 1.08994 * 109.47216 * 60.00225 * 9 8 7 39 39 H 1.09004 * 109.46986 * 299.99860 * 10 9 8 40 40 H 1.09004 * 109.47175 * 59.99996 * 10 9 8 41 41 H 1.09004 * 109.46930 * 299.99686 * 11 10 9 42 42 H 1.08992 * 109.47091 * 59.99518 * 11 10 9 43 43 H 1.08996 * 109.47049 * 299.99259 * 12 11 10 44 44 H 1.09004 * 109.47383 * 59.99722 * 12 11 10 45 45 H 1.08996 * 109.46844 * 299.99591 * 13 12 11 46 46 H 1.08994 * 109.47216 * 59.99929 * 13 12 11 47 47 H 0.97004 * 119.99932 * 359.97438 * 14 13 12 48 48 H 0.96997 * 120.00251 * 179.97438 * 18 17 15 49 49 H 1.07993 * 120.78870 * 0.26805 * 24 23 2 50 50 H 1.08004 * 120.41613 * 179.97438 * 25 24 23 51 51 H 1.07994 * 119.62350 * 179.97438 * 26 25 24 52 52 H 1.08003 * 119.62232 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 1.6412 0.0573 -2.4767 6 8 1.0107 1.0871 -2.3632 7 7 1.9842 -0.3915 -3.7003 8 6 1.5970 0.3655 -4.8933 9 6 2.1069 -0.3557 -6.1426 10 6 1.7031 0.4352 -7.3886 11 6 2.2124 -0.2863 -8.6379 12 6 1.8092 0.5049 -9.8838 13 6 2.3191 -0.2163 -11.1331 14 7 1.9324 0.5411 -12.3262 15 6 2.2820 0.0856 -13.5694 16 1 2.8424 -0.8321 -13.6703 17 6 1.9151 0.8029 -14.6998 18 7 1.2317 1.9210 -14.5767 19 14 2.3926 0.1821 -16.3956 20 1 3.1525 -1.0868 -16.2623 21 1 1.1665 -0.0578 -17.1982 22 1 3.2380 1.1969 -17.0744 23 6 2.0324 -0.7105 1.2303 24 6 2.8350 -0.0466 2.1459 25 6 3.2786 -0.7418 3.2602 26 6 2.9095 -2.0641 3.4203 27 7 2.1448 -2.6635 2.5288 28 6 1.7036 -2.0332 1.4577 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8902 31 1 -0.3634 0.5140 -0.8898 32 1 3.1262 -0.7993 -1.2058 33 1 1.6053 -1.7197 -1.2954 34 1 2.4882 -1.2154 -3.7910 35 1 0.5108 0.4444 -4.9368 36 1 2.0324 1.3637 -4.8473 37 1 3.1933 -0.4343 -6.0989 38 1 1.6720 -1.3541 -6.1888 39 1 0.6168 0.5142 -7.4325 40 1 2.1384 1.4334 -7.3422 41 1 3.2987 -0.3656 -8.5942 42 1 1.7768 -1.2843 -8.6841 43 1 0.7230 0.5846 -9.9277 44 1 2.2452 1.5029 -9.8373 45 1 3.4052 -0.2956 -11.0889 46 1 1.8834 -1.2143 -11.1798 47 1 1.4287 1.3651 -12.2354 48 1 0.9757 2.4225 -15.3665 49 1 3.1079 0.9872 1.9944 50 1 3.9055 -0.2564 3.9937 51 1 3.2513 -2.6128 4.2854 52 1 1.0787 -2.5571 0.7495 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001179741006.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:29:00 Heat of formation + Delta-G solvation = -30.186603 kcal Electronic energy + Delta-G solvation = -26217.919576 eV Core-core repulsion = 22409.134520 eV Total energy + Delta-G solvation = -3808.785056 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.96447 -40.02565 -37.02483 -36.03109 -35.31115 -33.97346 -32.74635 -31.98864 -30.75926 -30.02308 -28.44898 -26.66710 -24.75576 -24.12008 -23.85576 -22.34148 -21.56573 -21.07889 -20.66256 -20.20860 -17.87395 -17.35589 -16.97464 -16.82572 -16.34499 -16.19848 -15.63546 -15.46505 -14.73603 -14.66598 -14.54155 -14.47665 -13.92970 -13.66176 -13.56503 -13.48484 -13.36952 -13.29871 -13.03238 -12.72186 -12.49274 -12.35770 -11.85503 -11.77896 -11.66287 -11.39508 -11.35630 -11.19603 -10.93052 -10.74991 -10.72517 -10.42501 -10.31246 -10.26729 -10.12808 -9.93931 -9.89375 -9.64148 -9.46481 -9.40146 -8.84736 -6.88501 -5.73970 -3.02362 0.57907 0.76812 2.27415 2.78667 3.29954 3.44670 3.49923 3.52498 3.89344 4.10078 4.19166 4.40124 4.43793 4.48532 4.51569 4.59836 4.63987 4.67404 4.73098 4.88087 4.95993 5.03706 5.08599 5.19914 5.22520 5.27967 5.35801 5.38200 5.48809 5.55284 5.55505 5.63075 5.66278 5.68648 5.72049 5.83751 5.91694 5.94983 5.96483 6.12159 6.12668 6.18574 6.33279 6.33977 6.41548 6.48517 6.91869 6.95909 7.10999 7.46946 7.72573 7.86071 8.45430 9.56158 10.15771 10.50278 11.49287 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.042624 B = 0.001126 C = 0.001113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.750269 B =24850.002574 C =25150.112163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.030 4.030 3 H 0.089 0.911 4 C -0.136 4.136 5 C 0.512 3.488 6 O -0.536 6.536 7 N -0.731 5.731 8 C 0.117 3.883 9 C -0.131 4.131 10 C -0.116 4.116 11 C -0.113 4.113 12 C -0.127 4.127 13 C 0.152 3.848 14 N -0.735 5.735 15 C -0.238 4.238 16 H 0.070 0.930 17 C -0.016 4.016 18 N -0.934 5.934 19 Si 0.907 3.093 20 H -0.280 1.280 21 H -0.291 1.291 22 H -0.291 1.291 23 C -0.128 4.128 24 C -0.072 4.072 25 C -0.170 4.170 26 C 0.091 3.909 27 N -0.483 5.483 28 C 0.103 3.897 29 H 0.052 0.948 30 H 0.055 0.945 31 H 0.082 0.918 32 H 0.095 0.905 33 H 0.096 0.904 34 H 0.401 0.599 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.060 0.940 42 H 0.060 0.940 43 H 0.060 0.940 44 H 0.060 0.940 45 H 0.016 0.984 46 H 0.016 0.984 47 H 0.383 0.617 48 H 0.254 0.746 49 H 0.135 0.865 50 H 0.135 0.865 51 H 0.155 0.845 52 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.375 -6.843 39.420 40.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.050 4.050 3 H 0.108 0.892 4 C -0.176 4.176 5 C 0.298 3.702 6 O -0.413 6.413 7 N -0.383 5.383 8 C -0.007 4.007 9 C -0.169 4.169 10 C -0.154 4.154 11 C -0.151 4.151 12 C -0.165 4.165 13 C 0.024 3.976 14 N -0.379 5.379 15 C -0.370 4.370 16 H 0.088 0.912 17 C -0.211 4.211 18 N -0.584 5.584 19 Si 0.738 3.262 20 H -0.206 1.206 21 H -0.219 1.219 22 H -0.219 1.219 23 C -0.129 4.129 24 C -0.098 4.098 25 C -0.190 4.190 26 C -0.066 4.066 27 N -0.192 5.192 28 C -0.055 4.055 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.101 0.899 32 H 0.113 0.887 33 H 0.115 0.885 34 H 0.235 0.765 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.079 0.921 45 H 0.034 0.966 46 H 0.034 0.966 47 H 0.217 0.783 48 H 0.064 0.936 49 H 0.153 0.847 50 H 0.153 0.847 51 H 0.172 0.828 52 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 2.757 -7.082 39.494 40.219 hybrid contribution 0.657 0.459 -1.127 1.383 sum 3.415 -6.624 38.367 39.084 Atomic orbital electron populations 1.21989 0.93240 1.01979 1.03615 1.19814 0.97022 0.99140 0.89003 0.89234 1.21777 1.03172 1.00334 0.92310 1.20595 0.79241 0.85746 0.84592 1.90698 1.39512 1.24498 1.86587 1.46099 1.58112 1.27996 1.06118 1.21454 1.00490 0.95522 0.83197 1.21830 1.01525 0.99854 0.93660 1.21521 1.01499 0.99260 0.93167 1.21497 1.00812 0.99174 0.93650 1.21731 1.01163 0.99445 0.94132 1.20660 0.96471 0.94245 0.86187 1.42408 1.66913 1.27756 1.00865 1.19307 1.28516 1.05341 0.83814 0.91170 1.24746 1.01097 0.97440 0.97862 1.69673 1.43707 1.16636 1.28336 0.86114 0.77605 0.77809 0.84676 1.20556 1.21862 1.21859 1.20925 0.98647 0.95787 0.97588 1.21580 0.94792 1.00305 0.93149 1.22178 1.01677 0.96220 0.98901 1.22794 0.93889 0.92419 0.97468 1.67713 1.09945 1.38844 1.02654 1.22645 0.96865 0.91445 0.94499 0.92907 0.92620 0.89887 0.88698 0.88542 0.76533 0.91331 0.91381 0.91317 0.91281 0.91628 0.91639 0.92118 0.92096 0.92081 0.92091 0.96590 0.96591 0.78338 0.93587 0.84742 0.84712 0.82800 0.82923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 8.75 37.16 0.33 -0.68 16 2 C -0.03 -0.18 2.22 -91.78 -0.20 -0.38 16 3 H 0.09 0.60 7.74 -51.93 -0.40 0.20 16 4 C -0.14 -0.66 4.92 -27.88 -0.14 -0.80 16 5 C 0.51 4.03 7.55 -10.99 -0.08 3.95 16 6 O -0.54 -6.26 13.96 5.55 0.08 -6.19 16 7 N -0.73 -4.79 5.56 -60.29 -0.33 -5.12 16 8 C 0.12 0.93 5.67 -4.04 -0.02 0.91 16 9 C -0.13 -0.97 5.33 -26.73 -0.14 -1.11 16 10 C -0.12 -1.14 5.21 -26.73 -0.14 -1.28 16 11 C -0.11 -1.36 5.21 -26.73 -0.14 -1.50 16 12 C -0.13 -2.05 5.33 -26.73 -0.14 -2.19 16 13 C 0.15 3.14 6.26 -4.03 -0.03 3.12 16 14 N -0.74 -19.38 5.60 -59.90 -0.34 -19.71 16 15 C -0.24 -6.89 9.99 -15.06 -0.15 -7.04 16 16 H 0.07 1.96 7.83 -52.48 -0.41 1.55 16 17 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 18 N -0.93 -28.87 13.06 55.49 0.72 -28.15 16 19 Si 0.91 22.73 29.55 -169.99 -5.02 17.70 16 20 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 21 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 22 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 23 C -0.13 -0.74 4.79 -104.48 -0.50 -1.25 16 24 C -0.07 -0.38 9.81 -39.27 -0.39 -0.77 16 25 C -0.17 -0.82 10.11 -39.44 -0.40 -1.22 16 26 C 0.09 0.54 11.18 -17.55 -0.20 0.35 16 27 N -0.48 -3.83 10.36 -13.25 -0.14 -3.97 16 28 C 0.10 0.67 9.95 -17.55 -0.17 0.50 16 29 H 0.05 0.29 7.41 -51.93 -0.38 -0.09 16 30 H 0.05 0.37 8.14 -51.92 -0.42 -0.06 16 31 H 0.08 0.73 5.95 -51.93 -0.31 0.42 16 32 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.10 0.32 7.60 -51.93 -0.39 -0.08 16 34 H 0.40 1.57 8.47 -40.82 -0.35 1.22 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 44 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 45 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 46 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 47 H 0.38 10.55 7.67 -40.82 -0.31 10.24 16 48 H 0.25 7.54 8.31 -40.82 -0.34 7.21 16 49 H 0.13 0.50 8.00 -52.49 -0.42 0.08 16 50 H 0.13 0.33 8.06 -52.48 -0.42 -0.09 16 51 H 0.15 0.55 8.06 -52.49 -0.42 0.13 16 52 H 0.15 0.75 7.19 -52.48 -0.38 0.37 16 LS Contribution 423.49 15.07 6.38 6.38 Total: -1.00 -35.11 423.49 -10.52 -45.63 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: -9.26 Total: 3.37 kcal Atomic # 6 Polarization: -7.34 SS G_CDS: -2.61 Total: -9.95 kcal Atomic # 7 Polarization: -56.86 SS G_CDS: -0.08 Total: -56.94 kcal Atomic # 8 Polarization: -6.26 SS G_CDS: 0.08 Total: -6.19 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -5.02 Total: 17.70 kcal Total LS contribution 6.38 Total: 6.38 kcal Total: -35.11 -10.52 -45.63 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179741006.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.445 kcal (2) G-P(sol) polarization free energy of solvation -35.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds