Wall clock time and date at job start Tue Mar 31 2020 17:28:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.46965 * 2 1 4 4 C 1.53004 * 109.46993 * 240.00824 * 2 1 3 5 5 C 1.50703 * 109.47366 * 64.99456 * 4 2 1 6 6 O 1.21284 * 119.99673 * 359.97438 * 5 4 2 7 7 N 1.34773 * 120.00340 * 180.02562 * 5 4 2 8 8 C 1.46495 * 120.00211 * 180.02562 * 7 5 4 9 9 C 1.53006 * 109.46985 * 179.97438 * 8 7 5 10 10 C 1.53003 * 109.46979 * 180.02562 * 9 8 7 11 11 C 1.52998 * 109.47073 * 180.02562 * 10 9 8 12 12 C 1.52995 * 109.46974 * 180.02562 * 11 10 9 13 13 C 1.53006 * 109.46880 * 179.97438 * 12 11 10 14 14 N 1.46509 * 109.46912 * 179.97438 * 13 12 11 15 15 C 1.36937 * 119.99781 * 179.97438 * 14 13 12 16 16 H 1.08003 * 119.99683 * 0.02562 * 15 14 13 17 17 C 1.38811 * 119.99847 * 179.97438 * 15 14 13 18 18 N 1.31620 * 120.00149 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00001 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47076 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.47048 * 119.99942 * 19 17 15 22 22 H 1.48504 * 109.47351 * 240.00199 * 19 17 15 23 23 C 1.50690 * 109.47633 * 120.00533 * 2 1 3 24 24 C 1.38682 * 120.41929 * 239.72354 * 23 2 1 25 25 C 1.38625 * 118.41677 * 180.27483 * 24 23 2 26 26 C 1.38221 * 119.16809 * 0.02562 * 25 24 23 27 27 N 1.31860 * 120.76138 * 359.97438 * 26 25 24 28 28 C 1.31881 * 121.72574 * 359.97438 * 27 26 25 29 29 H 1.09003 * 109.46965 * 180.02562 * 1 2 3 30 30 H 1.09012 * 109.46797 * 299.99398 * 1 2 3 31 31 H 1.08998 * 109.47629 * 59.98907 * 1 2 3 32 32 H 1.08996 * 109.46945 * 184.99622 * 4 2 1 33 33 H 1.09004 * 109.46818 * 304.99675 * 4 2 1 34 34 H 0.97006 * 119.99426 * 359.97438 * 7 5 4 35 35 H 1.08996 * 109.47238 * 299.99597 * 8 7 5 36 36 H 1.09004 * 109.47088 * 59.99995 * 8 7 5 37 37 H 1.09004 * 109.47147 * 299.99864 * 9 8 7 38 38 H 1.08994 * 109.47216 * 60.00225 * 9 8 7 39 39 H 1.09004 * 109.46986 * 299.99860 * 10 9 8 40 40 H 1.09004 * 109.47175 * 59.99996 * 10 9 8 41 41 H 1.09004 * 109.46930 * 299.99686 * 11 10 9 42 42 H 1.08992 * 109.47091 * 59.99518 * 11 10 9 43 43 H 1.08996 * 109.47049 * 299.99259 * 12 11 10 44 44 H 1.09004 * 109.47383 * 59.99722 * 12 11 10 45 45 H 1.08996 * 109.46844 * 299.99591 * 13 12 11 46 46 H 1.08994 * 109.47216 * 59.99929 * 13 12 11 47 47 H 0.97004 * 119.99932 * 359.97438 * 14 13 12 48 48 H 0.96997 * 120.00251 * 179.97438 * 18 17 15 49 49 H 1.07993 * 120.78870 * 0.26805 * 24 23 2 50 50 H 1.08004 * 120.41613 * 179.97438 * 25 24 23 51 51 H 1.07994 * 119.62350 * 179.97438 * 26 25 24 52 52 H 1.08003 * 119.62232 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 1.6412 0.0573 -2.4767 6 8 1.0107 1.0871 -2.3632 7 7 1.9842 -0.3915 -3.7003 8 6 1.5970 0.3655 -4.8933 9 6 2.1069 -0.3557 -6.1426 10 6 1.7031 0.4352 -7.3886 11 6 2.2124 -0.2863 -8.6379 12 6 1.8092 0.5049 -9.8838 13 6 2.3191 -0.2163 -11.1331 14 7 1.9324 0.5411 -12.3262 15 6 2.2820 0.0856 -13.5694 16 1 2.8424 -0.8321 -13.6703 17 6 1.9151 0.8029 -14.6998 18 7 1.2317 1.9210 -14.5767 19 14 2.3926 0.1821 -16.3956 20 1 3.1525 -1.0868 -16.2623 21 1 1.1665 -0.0578 -17.1982 22 1 3.2380 1.1969 -17.0744 23 6 2.0324 -0.7105 1.2303 24 6 2.8350 -0.0466 2.1459 25 6 3.2786 -0.7418 3.2602 26 6 2.9095 -2.0641 3.4203 27 7 2.1448 -2.6635 2.5288 28 6 1.7036 -2.0332 1.4577 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8902 31 1 -0.3634 0.5140 -0.8898 32 1 3.1262 -0.7993 -1.2058 33 1 1.6053 -1.7197 -1.2954 34 1 2.4882 -1.2154 -3.7910 35 1 0.5108 0.4444 -4.9368 36 1 2.0324 1.3637 -4.8473 37 1 3.1933 -0.4343 -6.0989 38 1 1.6720 -1.3541 -6.1888 39 1 0.6168 0.5142 -7.4325 40 1 2.1384 1.4334 -7.3422 41 1 3.2987 -0.3656 -8.5942 42 1 1.7768 -1.2843 -8.6841 43 1 0.7230 0.5846 -9.9277 44 1 2.2452 1.5029 -9.8373 45 1 3.4052 -0.2956 -11.0889 46 1 1.8834 -1.2143 -11.1798 47 1 1.4287 1.3651 -12.2354 48 1 0.9757 2.4225 -15.3665 49 1 3.1079 0.9872 1.9944 50 1 3.9055 -0.2564 3.9937 51 1 3.2513 -2.6128 4.2854 52 1 1.0787 -2.5571 0.7495 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001179741006.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:28:59 Heat of formation + Delta-G solvation = -52.192728 kcal Electronic energy + Delta-G solvation = -26218.873833 eV Core-core repulsion = 22409.134520 eV Total energy + Delta-G solvation = -3809.739313 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.42335 -40.60127 -37.96344 -36.95672 -36.27750 -35.26726 -33.52706 -33.13746 -31.72954 -30.97065 -29.22045 -27.80569 -25.77020 -25.04123 -24.43752 -23.62507 -22.22776 -22.11555 -21.71815 -20.78329 -19.12320 -18.32887 -17.79122 -17.33714 -17.06365 -16.82683 -16.60585 -16.42956 -15.90701 -15.58308 -15.39614 -15.24756 -15.05297 -14.96256 -14.56143 -14.19145 -14.01123 -13.94712 -13.88122 -13.73664 -13.41127 -13.08494 -13.03248 -12.89153 -12.64062 -12.38202 -12.27486 -12.23834 -12.10982 -12.00686 -11.83187 -11.79770 -11.78894 -11.44858 -11.34270 -10.94949 -10.77637 -10.70776 -10.34410 -10.03723 -9.87458 -9.01948 -7.96958 -5.26554 0.18013 0.36424 1.46680 1.48066 1.58383 1.68079 2.23807 2.55359 2.88400 3.36839 3.49242 3.66703 3.73382 3.79133 3.98708 4.01309 4.02667 4.07764 4.11026 4.17653 4.25478 4.30282 4.32395 4.35991 4.47713 4.60235 4.65486 4.66952 4.67877 4.78892 4.79186 4.86485 4.90636 4.98301 4.98742 5.03114 5.07156 5.13085 5.17015 5.24951 5.29592 5.33058 5.36937 5.44511 5.47778 5.53842 5.55291 5.57373 5.80494 6.26012 6.60261 7.05570 7.31261 7.31359 8.08368 8.31203 9.27208 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.042624 B = 0.001126 C = 0.001113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.750269 B =24850.002574 C =25150.112163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.024 4.024 3 H 0.078 0.922 4 C -0.128 4.128 5 C 0.508 3.492 6 O -0.579 6.579 7 N -0.721 5.721 8 C 0.120 3.880 9 C -0.118 4.118 10 C -0.114 4.114 11 C -0.103 4.103 12 C -0.117 4.117 13 C 0.148 3.852 14 N -0.752 5.752 15 C -0.250 4.250 16 H 0.076 0.924 17 C -0.077 4.077 18 N -0.972 5.972 19 Si 0.976 3.024 20 H -0.265 1.265 21 H -0.292 1.292 22 H -0.291 1.291 23 C -0.128 4.128 24 C -0.081 4.081 25 C -0.168 4.168 26 C 0.078 3.922 27 N -0.513 5.513 28 C 0.092 3.908 29 H 0.063 0.937 30 H 0.051 0.949 31 H 0.060 0.940 32 H 0.113 0.887 33 H 0.118 0.882 34 H 0.416 0.584 35 H 0.055 0.945 36 H 0.054 0.946 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.069 0.931 42 H 0.069 0.931 43 H 0.054 0.946 44 H 0.054 0.946 45 H 0.019 0.981 46 H 0.019 0.981 47 H 0.373 0.627 48 H 0.252 0.748 49 H 0.148 0.852 50 H 0.159 0.841 51 H 0.173 0.827 52 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.781 -8.535 40.503 41.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.044 4.044 3 H 0.096 0.904 4 C -0.167 4.167 5 C 0.296 3.704 6 O -0.460 6.460 7 N -0.374 5.374 8 C -0.004 4.004 9 C -0.155 4.155 10 C -0.152 4.152 11 C -0.142 4.142 12 C -0.155 4.155 13 C 0.021 3.979 14 N -0.394 5.394 15 C -0.381 4.381 16 H 0.094 0.906 17 C -0.269 4.269 18 N -0.623 5.623 19 Si 0.805 3.195 20 H -0.189 1.189 21 H -0.219 1.219 22 H -0.218 1.218 23 C -0.130 4.130 24 C -0.107 4.107 25 C -0.187 4.187 26 C -0.078 4.078 27 N -0.222 5.222 28 C -0.065 4.065 29 H 0.082 0.918 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.131 0.869 33 H 0.136 0.864 34 H 0.253 0.747 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.099 0.901 38 H 0.100 0.900 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.087 0.913 42 H 0.088 0.912 43 H 0.072 0.928 44 H 0.072 0.928 45 H 0.037 0.963 46 H 0.037 0.963 47 H 0.204 0.796 48 H 0.061 0.939 49 H 0.166 0.834 50 H 0.177 0.823 51 H 0.190 0.810 52 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 4.200 -8.836 40.601 41.763 hybrid contribution 0.229 0.986 -1.395 1.724 sum 4.429 -7.850 39.206 40.229 Atomic orbital electron populations 1.21925 0.94052 1.02249 1.02234 1.19702 0.96272 0.98718 0.89693 0.90401 1.21776 1.04309 1.00515 0.90135 1.21128 0.78388 0.85312 0.85570 1.90688 1.41530 1.26535 1.87207 1.46002 1.57707 1.28302 1.05371 1.21293 0.99604 0.95304 0.84156 1.21689 1.02269 0.99732 0.91840 1.21456 1.01206 0.99251 0.93287 1.21417 1.01425 0.98996 0.92318 1.21645 1.00492 0.99283 0.94100 1.20885 0.96629 0.94236 0.86102 1.42683 1.66869 1.27889 1.01972 1.19733 1.27918 1.05374 0.85111 0.90592 1.25627 1.01604 0.97840 1.01843 1.69832 1.45233 1.18027 1.29172 0.85029 0.77174 0.77717 0.79581 1.18878 1.21859 1.21848 1.20873 0.98914 0.95607 0.97606 1.21868 0.94591 1.01073 0.93199 1.22449 1.01367 0.95828 0.99078 1.23197 0.93649 0.93198 0.97768 1.67713 1.11073 1.39882 1.03546 1.22841 0.97179 0.91806 0.94635 0.91794 0.93033 0.92135 0.86908 0.86431 0.74699 0.92692 0.92759 0.90081 0.90035 0.92021 0.92030 0.91264 0.91244 0.92765 0.92768 0.96260 0.96273 0.79595 0.93925 0.83421 0.82301 0.81022 0.81863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 8.75 71.98 0.63 -1.32 16 2 C -0.02 -0.27 2.22 -11.54 -0.03 -0.29 16 3 H 0.08 1.04 7.74 -2.39 -0.02 1.02 16 4 C -0.13 -1.04 4.92 29.85 0.15 -0.89 16 5 C 0.51 7.58 7.55 87.66 0.66 8.24 16 6 O -0.58 -13.80 13.96 -3.04 -0.04 -13.84 16 7 N -0.72 -8.29 5.56 -463.06 -2.57 -10.86 16 8 C 0.12 1.81 5.67 86.38 0.49 2.30 16 9 C -0.12 -1.48 5.33 30.60 0.16 -1.31 16 10 C -0.11 -2.05 5.21 30.59 0.16 -1.89 16 11 C -0.10 -2.29 5.21 30.59 0.16 -2.13 16 12 C -0.12 -3.72 5.33 30.59 0.16 -3.55 16 13 C 0.15 6.02 6.26 86.38 0.54 6.56 16 14 N -0.75 -39.87 5.60 -343.43 -1.92 -41.79 16 15 C -0.25 -14.39 9.99 84.03 0.84 -13.55 16 16 H 0.08 4.19 7.83 -2.91 -0.02 4.17 16 17 C -0.08 -4.53 5.50 84.86 0.47 -4.06 16 18 N -0.97 -60.81 13.06 21.65 0.28 -60.53 16 19 Si 0.98 46.66 29.55 68.60 2.03 48.69 16 20 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 21 H -0.29 -13.84 7.11 99.48 0.71 -13.14 16 22 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 23 C -0.13 -1.35 4.79 -19.77 -0.09 -1.44 16 24 C -0.08 -0.75 9.81 22.47 0.22 -0.53 16 25 C -0.17 -1.33 10.11 22.36 0.23 -1.10 16 26 C 0.08 0.83 11.18 84.68 0.95 1.78 16 27 N -0.51 -7.64 10.36 -195.85 -2.03 -9.67 16 28 C 0.09 1.10 9.95 84.67 0.84 1.94 16 29 H 0.06 0.67 7.41 -2.39 -0.02 0.65 16 30 H 0.05 0.69 8.14 -2.38 -0.02 0.67 16 31 H 0.06 1.10 5.95 -2.39 -0.01 1.09 16 32 H 0.11 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.12 0.48 7.60 -2.38 -0.02 0.47 16 34 H 0.42 2.16 8.47 -92.70 -0.79 1.37 16 35 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.05 0.98 8.14 -2.38 -0.02 0.96 16 37 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 41 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 42 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 43 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 44 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16 45 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 46 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 47 H 0.37 20.95 7.67 -92.71 -0.71 20.24 16 48 H 0.25 15.15 8.31 -92.71 -0.77 14.38 16 49 H 0.15 0.88 8.00 -2.91 -0.02 0.86 16 50 H 0.16 0.39 8.06 -2.91 -0.02 0.37 16 51 H 0.17 0.97 8.06 -2.91 -0.02 0.95 16 52 H 0.16 1.38 7.19 -2.91 -0.02 1.36 16 Total: -1.00 -76.36 423.49 1.68 -74.68 By element: Atomic # 1 Polarization: 25.17 SS G_CDS: -0.60 Total: 24.57 kcal Atomic # 6 Polarization: -17.79 SS G_CDS: 6.54 Total: -11.25 kcal Atomic # 7 Polarization: -116.60 SS G_CDS: -6.24 Total: -122.85 kcal Atomic # 8 Polarization: -13.80 SS G_CDS: -0.04 Total: -13.84 kcal Atomic # 14 Polarization: 46.66 SS G_CDS: 2.03 Total: 48.69 kcal Total: -76.36 1.68 -74.68 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179741006.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.490 kcal (2) G-P(sol) polarization free energy of solvation -76.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds