Wall clock time and date at job start Tue Mar 31 2020 18:42:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46504 * 120.00214 * 2 1 4 4 C 1.39055 * 120.00084 * 179.97438 * 2 1 3 5 5 C 1.39214 * 119.93142 * 173.96273 * 4 2 1 6 6 C 1.37605 * 120.07060 * 179.72494 * 5 4 2 7 7 C 1.39802 * 119.92715 * 0.54708 * 6 5 4 8 8 C 1.47526 * 120.06972 * 179.70286 * 7 6 5 9 9 O 1.21592 * 120.00122 * 180.02562 * 8 7 6 10 10 N 1.34774 * 119.99626 * 0.02562 * 8 7 6 11 11 C 1.46506 * 119.99773 * 180.02562 * 10 8 7 12 12 C 1.53005 * 109.47143 * 179.97438 * 11 10 8 13 13 C 1.52996 * 109.46854 * 179.97438 * 12 11 10 14 14 C 1.53005 * 109.46854 * 179.97438 * 13 12 11 15 15 C 1.52997 * 109.46853 * 179.97438 * 14 13 12 16 16 C 1.53005 * 109.46853 * 180.02562 * 15 14 13 17 17 N 1.46506 * 109.46752 * 180.02562 * 16 15 14 18 18 C 1.36941 * 119.99480 * 180.02562 * 17 16 15 19 19 H 1.08000 * 119.99914 * 359.97438 * 18 17 16 20 20 C 1.38815 * 119.99621 * 179.97438 * 18 17 16 21 21 N 1.31614 * 120.00334 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99573 * 179.97438 * 20 18 17 23 23 H 1.48508 * 109.47022 * 90.00264 * 22 20 18 24 24 H 1.48500 * 109.47127 * 209.99811 * 22 20 18 25 25 H 1.48496 * 109.47582 * 330.00064 * 22 20 18 26 26 C 1.39788 * 119.86246 * 359.72783 * 7 6 5 27 27 C 1.37611 * 119.93190 * 359.97438 * 26 7 6 28 28 H 1.09000 * 109.47288 * 269.99870 * 1 2 3 29 29 H 1.09002 * 109.46980 * 30.00154 * 1 2 3 30 30 H 1.09002 * 109.47114 * 149.99654 * 1 2 3 31 31 H 1.08998 * 109.47453 * 185.03599 * 3 2 1 32 32 H 1.08994 * 109.47011 * 305.03908 * 3 2 1 33 33 H 1.09005 * 109.46728 * 65.03648 * 3 2 1 34 34 H 1.08001 * 119.96594 * 359.97438 * 5 4 2 35 35 H 1.07998 * 120.04248 * 180.25785 * 6 5 4 36 36 H 0.97000 * 120.00121 * 359.97438 * 10 8 7 37 37 H 1.09002 * 109.46606 * 299.99870 * 11 10 8 38 38 H 1.08997 * 109.47336 * 59.99528 * 11 10 8 39 39 H 1.09000 * 109.46741 * 299.99869 * 12 11 10 40 40 H 1.09001 * 109.46637 * 60.00095 * 12 11 10 41 41 H 1.09002 * 109.46840 * 300.00033 * 13 12 11 42 42 H 1.08997 * 109.47391 * 59.99868 * 13 12 11 43 43 H 1.08992 * 109.46893 * 300.00254 * 14 13 12 44 44 H 1.09001 * 109.46637 * 60.00204 * 14 13 12 45 45 H 1.08997 * 109.47810 * 300.00516 * 15 14 13 46 46 H 1.09005 * 109.46913 * 60.00347 * 15 14 13 47 47 H 1.08997 * 109.46982 * 299.99917 * 16 15 14 48 48 H 1.08992 * 109.46789 * 60.00320 * 16 15 14 49 49 H 0.96995 * 119.99987 * 359.97438 * 17 16 15 50 50 H 0.96991 * 120.00132 * 180.02562 * 21 20 18 51 51 H 1.08003 * 120.04048 * 179.97438 * 26 7 6 52 52 H 1.08002 * 119.96429 * 179.97438 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1603 -1.2042 0.0005 5 6 3.5466 -1.2060 -0.1264 6 6 4.2380 -2.3957 -0.1205 7 6 3.5458 -3.6041 0.0016 8 6 4.2834 -4.8818 0.0016 9 8 3.6800 -5.9321 0.1074 10 7 5.6260 -4.8847 -0.1155 11 6 6.3584 -6.1535 -0.1161 12 6 7.8564 -5.8776 -0.2614 13 6 8.6213 -7.2027 -0.2613 14 6 10.1192 -6.9269 -0.4073 15 6 10.8841 -8.2519 -0.4065 16 6 12.3820 -7.9760 -0.5519 17 7 13.1145 -9.2448 -0.5518 18 6 14.4787 -9.2478 -0.6707 19 1 15.0146 -8.3149 -0.7651 20 6 15.1727 -10.4500 -0.6701 21 7 14.5197 -11.5869 -0.5547 22 14 17.0336 -10.4541 -0.8331 23 1 17.6489 -10.3840 0.5167 24 1 17.4683 -11.7018 -1.5110 25 1 17.4630 -9.2800 -1.6344 26 6 2.1532 -3.5993 0.1231 27 6 1.4680 -2.4059 0.1227 28 1 -0.3634 0.0000 1.0277 29 1 -0.3633 0.8900 -0.5139 30 1 -0.3633 -0.8900 -0.5139 31 1 3.2657 1.0716 -0.0902 32 1 1.8683 1.8784 -0.8414 33 1 2.0036 1.8002 0.9317 34 1 4.0804 -0.2723 -0.2255 35 1 5.3139 -2.3962 -0.2148 36 1 6.1073 -4.0468 -0.2003 37 1 6.1747 -6.6794 0.8209 38 1 6.0199 -6.7682 -0.9501 39 1 8.0397 -5.3519 -1.1985 40 1 8.1951 -5.2629 0.5725 41 1 8.4378 -7.7280 0.6760 42 1 8.2825 -7.8179 -1.0949 43 1 10.3022 -6.4017 -1.3447 44 1 10.4581 -6.3115 0.4261 45 1 10.7010 -8.7767 0.5310 46 1 10.5451 -8.8675 -1.2398 47 1 12.5655 -7.4511 -1.4894 48 1 12.7206 -7.3605 0.2815 49 1 12.6331 -10.0826 -0.4667 50 1 15.0047 -12.4268 -0.5538 51 1 1.6155 -4.5312 0.2171 52 1 0.3921 -2.4016 0.2161 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001180143628.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:42 Heat of formation + Delta-G solvation = -9.767681 kcal Electronic energy + Delta-G solvation = -26193.750134 eV Core-core repulsion = 22385.850509 eV Total energy + Delta-G solvation = -3807.899625 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.58271 -39.33405 -36.87282 -36.43769 -35.35526 -33.93138 -32.09356 -31.61955 -30.81369 -29.73799 -28.77170 -27.06064 -25.72433 -24.04941 -22.77424 -22.54934 -21.93435 -21.15542 -20.62131 -20.24030 -18.55669 -17.21640 -16.94083 -16.60835 -16.17931 -15.75962 -15.72737 -15.41697 -15.19121 -14.64703 -14.37254 -14.23271 -14.12371 -14.08289 -13.43942 -13.36540 -13.20189 -13.09984 -12.81332 -12.74406 -12.67680 -12.60375 -12.54112 -12.28475 -11.67142 -11.33496 -11.24170 -11.15620 -10.88397 -10.70034 -10.68537 -10.40532 -10.39210 -10.22049 -10.10701 -9.91671 -9.60953 -9.46302 -9.28628 -8.81759 -7.86634 -6.85930 -5.71417 -2.99737 0.66731 0.99763 2.48330 2.65679 2.96971 3.46813 3.51408 3.53575 3.59020 4.20075 4.26808 4.49904 4.54000 4.59830 4.67673 4.68787 4.72302 4.81396 4.86527 4.94057 4.95222 5.02543 5.08839 5.13986 5.14634 5.28853 5.43024 5.45201 5.56480 5.59701 5.68501 5.68960 5.74861 5.77845 5.86318 5.98742 6.01358 6.05104 6.18229 6.20676 6.28549 6.38357 6.38846 6.45343 6.52652 6.58549 6.85628 6.95528 6.99554 7.29073 7.74377 8.04366 8.48051 9.58622 10.18554 10.53122 11.51819 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.034047 B = 0.001186 C = 0.001148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.187872 B =23609.577166 C =24377.914468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.632 5.632 3 C 0.084 3.916 4 C 0.239 3.761 5 C -0.210 4.210 6 C -0.034 4.034 7 C -0.198 4.198 8 C 0.562 3.438 9 O -0.546 6.546 10 N -0.729 5.729 11 C 0.118 3.882 12 C -0.131 4.131 13 C -0.116 4.116 14 C -0.113 4.113 15 C -0.127 4.127 16 C 0.152 3.848 17 N -0.735 5.735 18 C -0.239 4.239 19 H 0.070 0.930 20 C -0.016 4.016 21 N -0.935 5.935 22 Si 0.907 3.093 23 H -0.290 1.290 24 H -0.291 1.291 25 H -0.282 1.282 26 C -0.007 4.007 27 C -0.209 4.209 28 H 0.051 0.949 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.059 0.941 33 H 0.055 0.945 34 H 0.130 0.870 35 H 0.125 0.875 36 H 0.398 0.602 37 H 0.069 0.931 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.060 0.940 44 H 0.060 0.940 45 H 0.060 0.940 46 H 0.060 0.940 47 H 0.016 0.984 48 H 0.016 0.984 49 H 0.383 0.617 50 H 0.255 0.745 51 H 0.135 0.865 52 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.971 28.808 1.202 43.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.341 5.341 3 C -0.058 4.058 4 C 0.135 3.865 5 C -0.232 4.232 6 C -0.053 4.053 7 C -0.203 4.203 8 C 0.350 3.650 9 O -0.424 6.424 10 N -0.381 5.381 11 C -0.005 4.005 12 C -0.169 4.169 13 C -0.154 4.154 14 C -0.151 4.151 15 C -0.165 4.165 16 C 0.024 3.976 17 N -0.379 5.379 18 C -0.370 4.370 19 H 0.088 0.912 20 C -0.211 4.211 21 N -0.584 5.584 22 Si 0.738 3.262 23 H -0.217 1.217 24 H -0.218 1.218 25 H -0.208 1.208 26 C -0.027 4.027 27 C -0.231 4.231 28 H 0.070 0.930 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.099 0.901 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.148 0.852 35 H 0.143 0.857 36 H 0.233 0.767 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.079 0.921 44 H 0.079 0.921 45 H 0.079 0.921 46 H 0.079 0.921 47 H 0.034 0.966 48 H 0.034 0.966 49 H 0.217 0.783 50 H 0.065 0.935 51 H 0.153 0.847 52 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -32.325 28.287 1.248 42.973 hybrid contribution 1.150 0.181 -0.085 1.168 sum -31.175 28.468 1.163 42.234 Atomic orbital electron populations 1.21696 0.79095 1.02993 1.01569 1.46317 1.05442 1.03405 1.78973 1.21794 0.97898 0.84728 1.01416 1.18053 0.91380 0.85864 0.91190 1.20629 0.92228 0.98692 1.11674 1.21019 0.99234 0.91234 0.93846 1.19660 0.94426 0.92603 1.13653 1.18197 0.81865 0.88913 0.75975 1.90775 1.68280 1.33216 1.50142 1.45951 1.06799 1.10093 1.75299 1.21447 0.91104 0.85387 1.02598 1.21831 0.93073 0.99352 1.02615 1.21518 0.95279 0.96029 1.02613 1.21498 0.93643 0.98176 1.01800 1.21732 0.96136 0.96632 1.01976 1.20660 0.89484 0.89946 0.97467 1.42400 1.04138 1.02777 1.88614 1.19265 0.83291 0.92628 1.41846 0.91231 1.24743 0.97950 0.95316 1.03117 1.69660 1.34348 0.96708 1.57650 0.86185 0.85626 0.76806 0.77570 1.21740 1.21756 1.20778 1.21008 0.92628 0.97968 0.91096 1.20647 1.00051 0.90744 1.11680 0.93000 0.91262 0.90985 0.90052 0.92266 0.92602 0.85230 0.85702 0.76690 0.91307 0.91318 0.91307 0.91311 0.91606 0.91612 0.92115 0.92123 0.92087 0.92082 0.96597 0.96601 0.78331 0.93546 0.84698 0.85388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.27 10.08 59.85 0.60 0.88 16 2 N -0.63 -3.16 3.39 -187.55 -0.64 -3.79 16 3 C 0.08 0.25 10.62 59.85 0.64 0.88 16 4 C 0.24 1.62 6.54 -83.86 -0.55 1.07 16 5 C -0.21 -1.32 9.29 -39.45 -0.37 -1.69 16 6 C -0.03 -0.23 9.53 -39.23 -0.37 -0.60 16 7 C -0.20 -1.83 5.88 -104.95 -0.62 -2.45 16 8 C 0.56 6.37 7.76 -12.48 -0.10 6.28 16 9 O -0.55 -8.27 16.34 5.28 0.09 -8.18 16 10 N -0.73 -6.48 5.51 -61.35 -0.34 -6.81 16 11 C 0.12 1.12 5.67 -4.04 -0.02 1.10 16 12 C -0.13 -1.10 5.33 -26.73 -0.14 -1.24 16 13 C -0.12 -1.22 5.21 -26.73 -0.14 -1.36 16 14 C -0.11 -1.42 5.21 -26.73 -0.14 -1.55 16 15 C -0.13 -2.10 5.33 -26.73 -0.14 -2.24 16 16 C 0.15 3.19 6.26 -4.04 -0.03 3.17 16 17 N -0.74 -19.59 5.60 -59.90 -0.34 -19.92 16 18 C -0.24 -6.96 9.99 -15.06 -0.15 -7.11 16 19 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 20 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 21 N -0.93 -29.08 13.06 55.49 0.72 -28.36 16 22 Si 0.91 22.88 29.55 -169.99 -5.02 17.86 16 23 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 24 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 25 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 26 C -0.01 -0.07 9.58 -39.23 -0.38 -0.44 16 27 C -0.21 -1.50 9.13 -39.45 -0.36 -1.86 16 28 H 0.05 0.14 8.14 -51.93 -0.42 -0.28 16 29 H 0.07 0.12 8.07 -51.93 -0.42 -0.30 16 30 H 0.07 0.21 6.44 -51.93 -0.33 -0.13 16 31 H 0.08 0.19 5.28 -51.93 -0.27 -0.08 16 32 H 0.06 0.12 8.14 -51.93 -0.42 -0.31 16 33 H 0.06 0.13 8.14 -51.93 -0.42 -0.29 16 34 H 0.13 0.55 5.72 -52.49 -0.30 0.25 16 35 H 0.13 0.55 6.39 -52.49 -0.34 0.21 16 36 H 0.40 2.41 6.49 -40.82 -0.26 2.15 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 44 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 46 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 47 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 48 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 49 H 0.38 10.67 7.67 -40.82 -0.31 10.36 16 50 H 0.25 7.63 8.31 -40.82 -0.34 7.29 16 51 H 0.14 1.22 7.64 -52.48 -0.40 0.82 16 52 H 0.13 0.69 6.28 -52.49 -0.33 0.36 16 LS Contribution 419.92 15.07 6.33 6.33 Total: -1.00 -35.88 419.92 -10.41 -46.29 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: -8.86 Total: 4.32 kcal Atomic # 6 Polarization: -5.37 SS G_CDS: -2.36 Total: -7.73 kcal Atomic # 7 Polarization: -58.31 SS G_CDS: -0.58 Total: -58.89 kcal Atomic # 8 Polarization: -8.27 SS G_CDS: 0.09 Total: -8.18 kcal Atomic # 14 Polarization: 22.88 SS G_CDS: -5.02 Total: 17.86 kcal Total LS contribution 6.33 Total: 6.33 kcal Total: -35.88 -10.41 -46.29 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180143628.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.526 kcal (2) G-P(sol) polarization free energy of solvation -35.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds