Wall clock time and date at job start Tue Mar 31 2020 18:42:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46504 * 120.00214 * 2 1 4 4 C 1.39055 * 120.00084 * 179.97438 * 2 1 3 5 5 C 1.39214 * 119.93142 * 173.96273 * 4 2 1 6 6 C 1.37605 * 120.07060 * 179.72494 * 5 4 2 7 7 C 1.39802 * 119.92715 * 0.54708 * 6 5 4 8 8 C 1.47526 * 120.06972 * 179.70286 * 7 6 5 9 9 O 1.21592 * 120.00122 * 180.02562 * 8 7 6 10 10 N 1.34774 * 119.99626 * 0.02562 * 8 7 6 11 11 C 1.46506 * 119.99773 * 180.02562 * 10 8 7 12 12 C 1.53005 * 109.47143 * 179.97438 * 11 10 8 13 13 C 1.52996 * 109.46854 * 179.97438 * 12 11 10 14 14 C 1.53005 * 109.46854 * 179.97438 * 13 12 11 15 15 C 1.52997 * 109.46853 * 179.97438 * 14 13 12 16 16 C 1.53005 * 109.46853 * 180.02562 * 15 14 13 17 17 N 1.46506 * 109.46752 * 180.02562 * 16 15 14 18 18 C 1.36941 * 119.99480 * 180.02562 * 17 16 15 19 19 H 1.08000 * 119.99914 * 359.97438 * 18 17 16 20 20 C 1.38815 * 119.99621 * 179.97438 * 18 17 16 21 21 N 1.31614 * 120.00334 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99573 * 179.97438 * 20 18 17 23 23 H 1.48508 * 109.47022 * 90.00264 * 22 20 18 24 24 H 1.48500 * 109.47127 * 209.99811 * 22 20 18 25 25 H 1.48496 * 109.47582 * 330.00064 * 22 20 18 26 26 C 1.39788 * 119.86246 * 359.72783 * 7 6 5 27 27 C 1.37611 * 119.93190 * 359.97438 * 26 7 6 28 28 H 1.09000 * 109.47288 * 269.99870 * 1 2 3 29 29 H 1.09002 * 109.46980 * 30.00154 * 1 2 3 30 30 H 1.09002 * 109.47114 * 149.99654 * 1 2 3 31 31 H 1.08998 * 109.47453 * 185.03599 * 3 2 1 32 32 H 1.08994 * 109.47011 * 305.03908 * 3 2 1 33 33 H 1.09005 * 109.46728 * 65.03648 * 3 2 1 34 34 H 1.08001 * 119.96594 * 359.97438 * 5 4 2 35 35 H 1.07998 * 120.04248 * 180.25785 * 6 5 4 36 36 H 0.97000 * 120.00121 * 359.97438 * 10 8 7 37 37 H 1.09002 * 109.46606 * 299.99870 * 11 10 8 38 38 H 1.08997 * 109.47336 * 59.99528 * 11 10 8 39 39 H 1.09000 * 109.46741 * 299.99869 * 12 11 10 40 40 H 1.09001 * 109.46637 * 60.00095 * 12 11 10 41 41 H 1.09002 * 109.46840 * 300.00033 * 13 12 11 42 42 H 1.08997 * 109.47391 * 59.99868 * 13 12 11 43 43 H 1.08992 * 109.46893 * 300.00254 * 14 13 12 44 44 H 1.09001 * 109.46637 * 60.00204 * 14 13 12 45 45 H 1.08997 * 109.47810 * 300.00516 * 15 14 13 46 46 H 1.09005 * 109.46913 * 60.00347 * 15 14 13 47 47 H 1.08997 * 109.46982 * 299.99917 * 16 15 14 48 48 H 1.08992 * 109.46789 * 60.00320 * 16 15 14 49 49 H 0.96995 * 119.99987 * 359.97438 * 17 16 15 50 50 H 0.96991 * 120.00132 * 180.02562 * 21 20 18 51 51 H 1.08003 * 120.04048 * 179.97438 * 26 7 6 52 52 H 1.08002 * 119.96429 * 179.97438 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1603 -1.2042 0.0005 5 6 3.5466 -1.2060 -0.1264 6 6 4.2380 -2.3957 -0.1205 7 6 3.5458 -3.6041 0.0016 8 6 4.2834 -4.8818 0.0016 9 8 3.6800 -5.9321 0.1074 10 7 5.6260 -4.8847 -0.1155 11 6 6.3584 -6.1535 -0.1161 12 6 7.8564 -5.8776 -0.2614 13 6 8.6213 -7.2027 -0.2613 14 6 10.1192 -6.9269 -0.4073 15 6 10.8841 -8.2519 -0.4065 16 6 12.3820 -7.9760 -0.5519 17 7 13.1145 -9.2448 -0.5518 18 6 14.4787 -9.2478 -0.6707 19 1 15.0146 -8.3149 -0.7651 20 6 15.1727 -10.4500 -0.6701 21 7 14.5197 -11.5869 -0.5547 22 14 17.0336 -10.4541 -0.8331 23 1 17.6489 -10.3840 0.5167 24 1 17.4683 -11.7018 -1.5110 25 1 17.4630 -9.2800 -1.6344 26 6 2.1532 -3.5993 0.1231 27 6 1.4680 -2.4059 0.1227 28 1 -0.3634 0.0000 1.0277 29 1 -0.3633 0.8900 -0.5139 30 1 -0.3633 -0.8900 -0.5139 31 1 3.2657 1.0716 -0.0902 32 1 1.8683 1.8784 -0.8414 33 1 2.0036 1.8002 0.9317 34 1 4.0804 -0.2723 -0.2255 35 1 5.3139 -2.3962 -0.2148 36 1 6.1073 -4.0468 -0.2003 37 1 6.1747 -6.6794 0.8209 38 1 6.0199 -6.7682 -0.9501 39 1 8.0397 -5.3519 -1.1985 40 1 8.1951 -5.2629 0.5725 41 1 8.4378 -7.7280 0.6760 42 1 8.2825 -7.8179 -1.0949 43 1 10.3022 -6.4017 -1.3447 44 1 10.4581 -6.3115 0.4261 45 1 10.7010 -8.7767 0.5310 46 1 10.5451 -8.8675 -1.2398 47 1 12.5655 -7.4511 -1.4894 48 1 12.7206 -7.3605 0.2815 49 1 12.6331 -10.0826 -0.4667 50 1 15.0047 -12.4268 -0.5538 51 1 1.6155 -4.5312 0.2171 52 1 0.3921 -2.4016 0.2161 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001180143628.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:41 Heat of formation + Delta-G solvation = -32.295347 kcal Electronic energy + Delta-G solvation = -26194.727007 eV Core-core repulsion = 22385.850509 eV Total energy + Delta-G solvation = -3808.876498 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.23318 -39.97529 -37.91072 -37.01131 -36.70660 -35.31843 -33.55909 -32.27660 -31.79160 -30.86671 -29.05528 -28.29283 -26.45162 -25.52772 -23.81159 -23.26618 -22.72577 -22.15013 -21.91837 -20.94353 -19.19293 -19.04565 -17.74304 -17.24640 -17.04511 -16.66980 -16.31002 -16.26829 -16.02330 -15.93088 -15.37744 -15.30262 -15.25792 -14.97910 -14.59730 -14.52037 -14.11125 -13.88503 -13.44898 -13.40540 -13.38262 -13.34254 -13.03049 -12.93172 -12.90824 -12.85290 -12.63683 -12.37589 -12.15988 -12.00159 -11.79662 -11.78486 -11.71656 -11.46587 -11.32818 -10.94271 -10.92885 -10.88087 -10.10400 -9.99395 -9.01036 -8.30004 -7.95879 -5.25546 0.05861 0.47525 1.47043 1.49666 1.58266 1.92803 2.15507 2.23362 2.56282 2.97454 3.37693 3.72200 3.78541 3.84343 3.93768 4.03489 4.05202 4.19812 4.26470 4.30768 4.35379 4.37826 4.44186 4.49641 4.54433 4.61129 4.64393 4.66297 4.76221 4.79649 4.86828 4.89605 4.91254 4.99393 5.00423 5.08075 5.08360 5.16687 5.21403 5.30424 5.33819 5.37001 5.44395 5.48019 5.51651 5.55172 5.58146 5.74589 6.23591 6.26870 6.42548 6.59181 7.26655 7.32185 8.09431 8.32313 9.28139 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.034047 B = 0.001186 C = 0.001148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.187872 B =23609.577166 C =24377.914468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.633 5.633 3 C 0.078 3.922 4 C 0.237 3.763 5 C -0.213 4.213 6 C -0.027 4.027 7 C -0.223 4.223 8 C 0.557 3.443 9 O -0.596 6.596 10 N -0.716 5.716 11 C 0.120 3.880 12 C -0.117 4.117 13 C -0.114 4.114 14 C -0.103 4.103 15 C -0.117 4.117 16 C 0.148 3.852 17 N -0.752 5.752 18 C -0.251 4.251 19 H 0.076 0.924 20 C -0.077 4.077 21 N -0.972 5.972 22 Si 0.977 3.023 23 H -0.285 1.285 24 H -0.294 1.294 25 H -0.268 1.268 26 C -0.023 4.023 27 C -0.216 4.216 28 H 0.055 0.945 29 H 0.085 0.915 30 H 0.071 0.929 31 H 0.087 0.913 32 H 0.071 0.929 33 H 0.063 0.937 34 H 0.155 0.845 35 H 0.151 0.849 36 H 0.414 0.586 37 H 0.055 0.945 38 H 0.055 0.945 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.070 0.930 44 H 0.070 0.930 45 H 0.053 0.947 46 H 0.053 0.947 47 H 0.020 0.980 48 H 0.020 0.980 49 H 0.372 0.628 50 H 0.252 0.748 51 H 0.120 0.880 52 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.540 32.228 0.948 45.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.341 5.341 3 C -0.064 4.064 4 C 0.131 3.869 5 C -0.235 4.235 6 C -0.047 4.047 7 C -0.228 4.228 8 C 0.347 3.653 9 O -0.479 6.479 10 N -0.368 5.368 11 C -0.004 4.004 12 C -0.154 4.154 13 C -0.152 4.152 14 C -0.141 4.141 15 C -0.155 4.155 16 C 0.022 3.978 17 N -0.394 5.394 18 C -0.383 4.383 19 H 0.094 0.906 20 C -0.269 4.269 21 N -0.623 5.623 22 Si 0.805 3.195 23 H -0.212 1.212 24 H -0.220 1.220 25 H -0.192 1.192 26 C -0.043 4.043 27 C -0.238 4.238 28 H 0.074 0.926 29 H 0.104 0.896 30 H 0.090 0.910 31 H 0.106 0.894 32 H 0.090 0.910 33 H 0.082 0.918 34 H 0.172 0.828 35 H 0.168 0.832 36 H 0.252 0.748 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.101 0.899 40 H 0.101 0.899 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.088 0.912 44 H 0.088 0.912 45 H 0.072 0.928 46 H 0.072 0.928 47 H 0.038 0.962 48 H 0.038 0.962 49 H 0.204 0.796 50 H 0.061 0.939 51 H 0.138 0.862 52 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -31.893 31.810 0.990 45.056 hybrid contribution 0.923 -0.744 -0.001 1.185 sum -30.970 31.066 0.989 43.877 Atomic orbital electron populations 1.21849 0.78200 1.03845 1.02092 1.46608 1.06304 1.03473 1.77754 1.21977 0.98169 0.83919 1.02363 1.18260 0.91958 0.86365 0.90367 1.20934 0.92172 0.99444 1.10982 1.21253 1.00463 0.90352 0.92587 1.19601 0.94518 0.92505 1.16214 1.18617 0.82448 0.89095 0.75128 1.90738 1.69349 1.35031 1.52767 1.45815 1.06155 1.10638 1.74196 1.21355 0.92050 0.85543 1.01416 1.21695 0.91428 0.98324 1.03998 1.21453 0.94156 0.97238 1.02340 1.21413 0.94167 0.95775 1.02738 1.21646 0.93688 0.98915 1.01292 1.20881 0.91702 0.87759 0.97479 1.42677 1.03863 1.04253 1.88628 1.19707 0.84700 0.92968 1.40910 0.90573 1.25634 1.02831 0.94966 1.03485 1.69825 1.36122 0.97180 1.59148 0.85088 0.79765 0.76965 0.77638 1.21215 1.22011 1.19242 1.21017 0.92947 0.98165 0.92137 1.20753 1.00738 0.90497 1.11814 0.92617 0.89589 0.91029 0.89410 0.91049 0.91841 0.82804 0.83171 0.74820 0.92634 0.92635 0.89854 0.89865 0.91992 0.91994 0.91156 0.91168 0.92790 0.92780 0.96241 0.96233 0.79611 0.93927 0.86191 0.84182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.36 10.08 127.77 1.29 1.64 16 2 N -0.63 -4.96 3.39 -747.29 -2.53 -7.50 16 3 C 0.08 0.24 10.62 127.77 1.36 1.59 16 4 C 0.24 2.84 6.54 38.47 0.25 3.09 16 5 C -0.21 -2.20 9.29 22.35 0.21 -1.99 16 6 C -0.03 -0.32 9.53 22.50 0.21 -0.11 16 7 C -0.22 -4.15 5.88 -20.08 -0.12 -4.27 16 8 C 0.56 13.00 7.76 86.69 0.67 13.67 16 9 O -0.60 -19.28 16.34 -4.00 -0.07 -19.34 16 10 N -0.72 -12.15 5.51 -466.26 -2.57 -14.72 16 11 C 0.12 2.23 5.67 86.38 0.49 2.72 16 12 C -0.12 -1.69 5.33 30.59 0.16 -1.53 16 13 C -0.11 -2.21 5.21 30.59 0.16 -2.05 16 14 C -0.10 -2.36 5.21 30.59 0.16 -2.20 16 15 C -0.12 -3.81 5.33 30.59 0.16 -3.65 16 16 C 0.15 6.11 6.26 86.38 0.54 6.65 16 17 N -0.75 -40.27 5.60 -343.44 -1.92 -42.20 16 18 C -0.25 -14.59 9.99 84.03 0.84 -13.75 16 19 H 0.08 4.22 7.83 -2.91 -0.02 4.20 16 20 C -0.08 -4.56 5.50 84.86 0.47 -4.09 16 21 N -0.97 -61.24 13.06 21.65 0.28 -60.96 16 22 Si 0.98 46.93 29.55 68.60 2.03 48.96 16 23 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 24 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 25 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 26 C -0.02 -0.43 9.58 22.50 0.22 -0.21 16 27 C -0.22 -3.05 9.13 22.36 0.20 -2.85 16 28 H 0.06 0.21 8.14 -2.39 -0.02 0.19 16 29 H 0.09 0.09 8.07 -2.39 -0.02 0.07 16 30 H 0.07 0.32 6.44 -2.39 -0.02 0.31 16 31 H 0.09 0.14 5.28 -2.39 -0.01 0.13 16 32 H 0.07 0.07 8.14 -2.39 -0.02 0.05 16 33 H 0.06 0.12 8.14 -2.38 -0.02 0.10 16 34 H 0.15 0.77 5.72 -2.91 -0.02 0.75 16 35 H 0.15 0.87 6.39 -2.91 -0.02 0.85 16 36 H 0.41 4.13 6.49 -92.71 -0.60 3.53 16 37 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 42 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 43 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 44 H 0.07 1.50 8.14 -2.39 -0.02 1.49 16 45 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 46 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16 47 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 48 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 49 H 0.37 21.16 7.67 -92.71 -0.71 20.45 16 50 H 0.25 15.29 8.31 -92.72 -0.77 14.52 16 51 H 0.12 2.48 7.64 -2.91 -0.02 2.46 16 52 H 0.14 1.48 6.28 -2.91 -0.02 1.46 16 Total: -1.00 -78.61 419.92 2.09 -76.52 By element: Atomic # 1 Polarization: 26.96 SS G_CDS: -0.40 Total: 26.56 kcal Atomic # 6 Polarization: -14.60 SS G_CDS: 7.27 Total: -7.32 kcal Atomic # 7 Polarization: -118.63 SS G_CDS: -6.74 Total: -125.37 kcal Atomic # 8 Polarization: -19.28 SS G_CDS: -0.07 Total: -19.34 kcal Atomic # 14 Polarization: 46.93 SS G_CDS: 2.03 Total: 48.96 kcal Total: -78.61 2.09 -76.52 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180143628.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.221 kcal (2) G-P(sol) polarization free energy of solvation -78.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds