Wall clock time and date at job start Tue Mar 31 2020 17:16:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47222 * 2 1 4 4 C 1.52996 * 109.47058 * 239.99804 * 2 1 3 5 5 H 1.09006 * 109.47318 * 60.00410 * 4 2 1 6 6 C 1.52998 * 109.47420 * 180.02562 * 4 2 1 7 7 C 1.50701 * 109.47346 * 300.00204 * 4 2 1 8 8 O 1.21282 * 119.99869 * 359.97438 * 7 4 2 9 9 N 1.34773 * 119.99858 * 179.97438 * 7 4 2 10 10 C 1.46501 * 119.99752 * 180.02562 * 9 7 4 11 11 C 1.53005 * 109.47389 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.47413 * 179.97438 * 11 10 9 13 13 N 1.46502 * 109.47322 * 179.97438 * 12 11 10 14 14 C 1.36932 * 119.99727 * 84.21969 * 13 12 11 15 15 H 1.08000 * 120.00391 * 325.58902 * 14 13 12 16 16 C 1.38817 * 119.99856 * 145.58867 * 14 13 12 17 17 N 1.31623 * 119.99592 * 336.87220 * 16 14 13 18 18 Si 1.86800 * 120.00003 * 156.87035 * 16 14 13 19 19 H 1.48494 * 109.46938 * 90.00539 * 18 16 14 20 20 H 1.48502 * 109.46744 * 210.00076 * 18 16 14 21 21 H 1.48494 * 109.47069 * 330.00004 * 18 16 14 22 22 C 1.46498 * 119.99943 * 264.22581 * 13 12 11 23 23 C 1.50702 * 109.47301 * 89.99649 * 22 13 12 24 24 C 1.38668 * 120.42065 * 269.72071 * 23 22 13 25 25 C 1.38626 * 118.42460 * 179.78313 * 24 23 22 26 26 C 1.38224 * 119.15700 * 0.51423 * 25 24 23 27 27 N 1.31855 * 120.76704 * 359.72363 * 26 25 24 28 28 C 1.31893 * 121.72370 * 0.02562 * 27 26 25 29 29 H 1.09003 * 109.46752 * 59.99613 * 1 2 3 30 30 H 1.08995 * 109.47298 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46917 * 300.00338 * 1 2 3 32 32 H 1.09000 * 109.47238 * 120.00304 * 2 1 3 33 33 H 1.08998 * 109.47295 * 60.00521 * 3 2 1 34 34 H 1.09007 * 109.47024 * 179.97438 * 3 2 1 35 35 H 1.08994 * 109.47576 * 299.99643 * 3 2 1 36 36 H 1.09002 * 109.47110 * 59.99799 * 6 4 2 37 37 H 1.09003 * 109.47619 * 180.02562 * 6 4 2 38 38 H 1.09008 * 109.47218 * 300.00317 * 6 4 2 39 39 H 0.97000 * 120.00383 * 0.02562 * 9 7 4 40 40 H 1.09000 * 109.46979 * 299.99539 * 10 9 7 41 41 H 1.09000 * 109.47617 * 59.99576 * 10 9 7 42 42 H 1.09003 * 109.46843 * 300.00199 * 11 10 9 43 43 H 1.09007 * 109.47008 * 59.99650 * 11 10 9 44 44 H 1.09003 * 109.47573 * 300.00113 * 12 11 10 45 45 H 1.09007 * 109.47024 * 60.00021 * 12 11 10 46 46 H 0.97006 * 119.99715 * 179.97438 * 17 16 14 47 47 H 1.09003 * 109.47038 * 209.99846 * 22 13 12 48 48 H 1.08999 * 109.47064 * 329.99485 * 22 13 12 49 49 H 1.08005 * 120.78907 * 0.02562 * 24 23 22 50 50 H 1.08001 * 120.42126 * 180.22044 * 25 24 23 51 51 H 1.08002 * 119.62314 * 179.75083 * 26 25 24 52 52 H 1.07992 * 119.61855 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 1 1.6767 -0.2074 -2.1392 6 6 3.5699 -0.7219 -1.2489 7 6 1.5376 -2.1421 -1.2492 8 8 0.8407 -2.5389 -0.3394 9 7 1.8628 -2.9718 -2.2603 10 6 1.3740 -4.3528 -2.2606 11 6 1.8840 -5.0742 -3.5097 12 6 1.3741 -6.5167 -3.5097 13 7 1.8620 -7.2072 -4.7061 14 6 3.1098 -7.7710 -4.7101 15 1 3.9156 -7.3032 -4.1639 16 6 3.3392 -8.9439 -5.4164 17 7 2.3379 -9.7522 -5.6926 18 14 5.0690 -9.3748 -5.9746 19 1 5.7457 -10.1708 -4.9194 20 1 5.0012 -10.1696 -7.2273 21 1 5.8349 -8.1268 -6.2211 22 6 1.0149 -7.2944 -5.8982 23 6 1.2738 -6.1049 -6.7866 24 6 0.5315 -4.9431 -6.6385 25 6 0.8075 -3.8725 -7.4748 26 6 1.7992 -4.0017 -8.4291 27 7 2.4819 -5.1237 -8.5448 28 6 2.2499 -6.1605 -7.7632 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.6768 1.9563 0.8900 34 1 3.1301 1.4424 0.0005 35 1 1.6768 1.9563 -0.8899 36 1 3.9329 -1.2359 -0.3589 37 1 3.9333 -1.2354 -2.1392 38 1 3.9337 0.3057 -1.2487 39 1 2.4205 -2.6545 -2.9878 40 1 1.7373 -4.8670 -1.3708 41 1 0.2839 -4.3525 -2.2603 42 1 1.5211 -4.5601 -4.3998 43 1 2.9741 -5.0745 -3.5095 44 1 1.7373 -7.0305 -2.6197 45 1 0.2840 -6.5166 -3.5098 46 1 2.4981 -10.5717 -6.1864 47 1 1.2455 -8.2108 -6.4415 48 1 -0.0333 -7.3032 -5.5992 49 1 -0.2407 -4.8725 -5.8867 50 1 0.2515 -2.9510 -7.3852 51 1 2.0177 -3.1738 -9.0873 52 1 2.8299 -7.0629 -7.8874 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230861908.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:16:51 Heat of formation + Delta-G solvation = -6.277740 kcal Electronic energy + Delta-G solvation = -29144.414622 eV Core-core repulsion = 25336.666333 eV Total energy + Delta-G solvation = -3807.748290 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.13820 -39.53487 -36.80043 -36.13199 -34.92447 -32.38159 -32.20410 -31.23405 -30.90970 -29.47276 -27.46301 -25.97938 -25.58671 -24.31825 -22.90358 -22.64873 -21.26483 -21.02977 -20.35876 -19.53741 -17.20413 -16.93484 -16.51956 -16.02205 -15.68458 -15.52714 -15.02624 -14.85823 -14.46616 -14.37283 -14.34952 -13.91879 -13.61403 -13.44321 -13.11368 -12.98413 -12.80508 -12.52342 -12.43795 -12.32731 -12.25764 -12.05871 -11.84739 -11.70492 -11.34214 -11.19138 -11.10956 -11.05917 -10.90476 -10.79750 -10.73098 -10.67915 -10.19721 -10.13578 -10.02993 -9.54504 -9.18539 -8.93043 -8.92619 -8.60302 -8.30087 -6.79774 -5.95513 -3.48839 1.71664 1.85265 2.66922 3.24180 3.29075 3.38146 3.42228 4.32217 4.42535 4.44105 4.59753 4.66973 4.99617 4.99977 5.11910 5.14194 5.20454 5.23333 5.27495 5.31704 5.42413 5.47737 5.50437 5.56056 5.61940 5.63440 5.68173 5.70514 5.75048 5.81822 5.82951 5.90206 6.00843 6.03800 6.09673 6.14772 6.20052 6.33966 6.36289 6.40708 6.53504 6.61241 6.68440 6.70894 6.92696 7.00424 7.30287 7.50321 7.56289 7.68956 8.27954 8.33136 8.55748 9.00838 9.63850 10.19204 11.05104 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.012138 B = 0.002907 C = 0.002638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2306.213123 B = 9629.915889 C =10611.915858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.075 4.075 3 C -0.150 4.150 4 C -0.108 4.108 5 H 0.094 0.906 6 C -0.147 4.147 7 C 0.514 3.486 8 O -0.540 6.540 9 N -0.726 5.726 10 C 0.120 3.880 11 C -0.152 4.152 12 C 0.152 3.848 13 N -0.572 5.572 14 C -0.259 4.259 15 H 0.062 0.938 16 C 0.014 3.986 17 N -0.881 5.881 18 Si 0.891 3.109 19 H -0.284 1.284 20 H -0.286 1.286 21 H -0.276 1.276 22 C 0.172 3.828 23 C -0.116 4.116 24 C -0.083 4.083 25 C -0.181 4.181 26 C 0.068 3.932 27 N -0.492 5.492 28 C 0.112 3.888 29 H 0.045 0.955 30 H 0.084 0.916 31 H 0.049 0.951 32 H 0.075 0.925 33 H 0.055 0.945 34 H 0.057 0.943 35 H 0.054 0.946 36 H 0.061 0.939 37 H 0.060 0.940 38 H 0.069 0.931 39 H 0.399 0.601 40 H 0.064 0.936 41 H 0.062 0.938 42 H 0.062 0.938 43 H 0.064 0.936 44 H 0.051 0.949 45 H 0.039 0.961 46 H 0.258 0.742 47 H 0.111 0.889 48 H 0.037 0.963 49 H 0.121 0.879 50 H 0.120 0.880 51 H 0.141 0.859 52 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.493 17.991 4.297 18.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.094 4.094 3 C -0.207 4.207 4 C -0.130 4.130 5 H 0.112 0.888 6 C -0.204 4.204 7 C 0.300 3.700 8 O -0.418 6.418 9 N -0.377 5.377 10 C -0.003 4.003 11 C -0.193 4.193 12 C 0.025 3.975 13 N -0.289 5.289 14 C -0.388 4.388 15 H 0.080 0.920 16 C -0.187 4.187 17 N -0.523 5.523 18 Si 0.719 3.281 19 H -0.211 1.211 20 H -0.212 1.212 21 H -0.201 1.201 22 C 0.046 3.954 23 C -0.121 4.121 24 C -0.110 4.110 25 C -0.201 4.201 26 C -0.089 4.089 27 N -0.200 5.200 28 C -0.046 4.046 29 H 0.064 0.936 30 H 0.102 0.898 31 H 0.068 0.932 32 H 0.094 0.906 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.088 0.912 39 H 0.233 0.767 40 H 0.082 0.918 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.083 0.917 44 H 0.069 0.931 45 H 0.058 0.942 46 H 0.068 0.932 47 H 0.128 0.872 48 H 0.056 0.944 49 H 0.139 0.861 50 H 0.138 0.862 51 H 0.159 0.841 52 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -2.354 17.389 4.261 18.057 hybrid contribution 0.587 0.166 -0.120 0.622 sum -1.767 17.555 4.140 18.123 Atomic orbital electron populations 1.22075 0.94740 1.04131 1.00716 1.20883 0.96526 0.95172 0.96803 1.21930 1.01065 0.95868 1.01815 1.21405 0.97391 0.93171 1.00989 0.88765 1.21848 0.93037 1.02890 1.02675 1.20632 0.80062 0.87568 0.81760 1.90623 1.37988 1.77251 1.35892 1.46180 1.53502 1.12955 1.25080 1.21426 0.98894 0.80397 0.99627 1.22533 1.01845 0.99397 0.95504 1.20755 0.96052 0.89619 0.91065 1.43705 1.16504 1.62012 1.06722 1.18989 0.86105 1.02725 1.31026 0.92023 1.25071 0.97074 0.94710 1.01828 1.69980 1.30755 1.10514 1.41055 0.86489 0.84795 0.78353 0.78433 1.21116 1.21169 1.20117 1.20093 0.92590 0.94997 0.87768 1.22252 0.95050 0.98820 0.95990 1.21427 0.98839 0.92868 0.97847 1.21955 1.00365 0.99456 0.98367 1.22467 0.93586 0.95605 0.97267 1.67635 1.26086 1.00374 1.25941 1.22680 0.94883 0.96298 0.90698 0.93609 0.89780 0.93175 0.90640 0.92552 0.92395 0.92728 0.92020 0.92081 0.91187 0.76733 0.91755 0.91970 0.91898 0.91724 0.93093 0.94223 0.93221 0.87185 0.94447 0.86079 0.86183 0.84145 0.83211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.64 8.87 37.16 0.33 -1.31 16 2 C -0.07 -0.71 2.15 -90.62 -0.19 -0.90 16 3 C -0.15 -1.08 8.84 37.16 0.33 -0.75 16 4 C -0.11 -1.01 2.32 -91.77 -0.21 -1.23 16 5 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 6 C -0.15 -1.17 8.74 37.16 0.32 -0.84 16 7 C 0.51 6.53 6.86 -10.99 -0.08 6.46 16 8 O -0.54 -8.70 13.66 5.56 0.08 -8.63 16 9 N -0.73 -8.85 5.45 -60.29 -0.33 -9.18 16 10 C 0.12 1.69 5.67 -4.04 -0.02 1.67 16 11 C -0.15 -2.40 5.62 -26.73 -0.15 -2.55 16 12 C 0.15 2.85 5.72 -4.04 -0.02 2.82 16 13 N -0.57 -12.68 2.44 -174.61 -0.43 -13.11 16 14 C -0.26 -6.47 9.47 -15.06 -0.14 -6.61 16 15 H 0.06 1.57 7.93 -52.49 -0.42 1.15 16 16 C 0.01 0.35 4.94 -17.43 -0.09 0.27 16 17 N -0.88 -23.42 11.36 55.49 0.63 -22.79 16 18 Si 0.89 20.43 29.61 -169.99 -5.03 15.40 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 20 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 22 C 0.17 3.65 5.49 -5.19 -0.03 3.62 16 23 C -0.12 -2.21 5.46 -104.48 -0.57 -2.78 16 24 C -0.08 -1.33 8.07 -39.28 -0.32 -1.65 16 25 C -0.18 -2.61 10.11 -39.44 -0.40 -3.01 16 26 C 0.07 1.06 11.18 -17.55 -0.20 0.87 16 27 N -0.49 -9.26 10.36 -13.25 -0.14 -9.40 16 28 C 0.11 2.24 10.86 -17.55 -0.19 2.05 16 29 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.08 1.09 5.51 -51.93 -0.29 0.81 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.08 0.81 8.10 -51.93 -0.42 0.39 16 33 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.06 0.37 6.43 -51.93 -0.33 0.04 16 35 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.06 0.46 7.57 -51.93 -0.39 0.07 16 38 H 0.07 0.45 6.43 -51.92 -0.33 0.12 16 39 H 0.40 4.14 7.89 -40.82 -0.32 3.82 16 40 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.06 1.00 6.20 -51.93 -0.32 0.67 16 43 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 44 H 0.05 1.00 8.09 -51.93 -0.42 0.58 16 45 H 0.04 0.69 7.83 -51.93 -0.41 0.29 16 46 H 0.26 6.65 8.31 -40.82 -0.34 6.31 16 47 H 0.11 2.67 5.30 -51.93 -0.28 2.39 16 48 H 0.04 0.75 7.81 -51.93 -0.41 0.34 16 49 H 0.12 1.76 8.04 -52.48 -0.42 1.33 16 50 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 51 H 0.14 1.74 8.06 -52.49 -0.42 1.32 16 52 H 0.15 3.19 8.06 -52.49 -0.42 2.76 16 LS Contribution 413.46 15.07 6.23 6.23 Total: -1.00 -28.65 413.46 -9.58 -38.24 By element: Atomic # 1 Polarization: 16.08 SS G_CDS: -8.97 Total: 7.11 kcal Atomic # 6 Polarization: -2.25 SS G_CDS: -1.63 Total: -3.88 kcal Atomic # 7 Polarization: -54.21 SS G_CDS: -0.26 Total: -54.48 kcal Atomic # 8 Polarization: -8.70 SS G_CDS: 0.08 Total: -8.63 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.03 Total: 15.40 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -28.65 -9.58 -38.24 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230861908.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.958 kcal (2) G-P(sol) polarization free energy of solvation -28.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds