Wall clock time and date at job start Tue Mar 31 2020 17:16:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47222 * 2 1 4 4 C 1.52996 * 109.47058 * 239.99804 * 2 1 3 5 5 H 1.09006 * 109.47318 * 60.00410 * 4 2 1 6 6 C 1.52998 * 109.47420 * 180.02562 * 4 2 1 7 7 C 1.50701 * 109.47346 * 300.00204 * 4 2 1 8 8 O 1.21282 * 119.99869 * 359.97438 * 7 4 2 9 9 N 1.34773 * 119.99858 * 179.97438 * 7 4 2 10 10 C 1.46501 * 119.99752 * 180.02562 * 9 7 4 11 11 C 1.53005 * 109.47389 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.47413 * 179.97438 * 11 10 9 13 13 N 1.46502 * 109.47322 * 179.97438 * 12 11 10 14 14 C 1.36932 * 119.99727 * 84.21969 * 13 12 11 15 15 H 1.08000 * 120.00391 * 325.58902 * 14 13 12 16 16 C 1.38817 * 119.99856 * 145.58867 * 14 13 12 17 17 N 1.31623 * 119.99592 * 336.87220 * 16 14 13 18 18 Si 1.86800 * 120.00003 * 156.87035 * 16 14 13 19 19 H 1.48494 * 109.46938 * 90.00539 * 18 16 14 20 20 H 1.48502 * 109.46744 * 210.00076 * 18 16 14 21 21 H 1.48494 * 109.47069 * 330.00004 * 18 16 14 22 22 C 1.46498 * 119.99943 * 264.22581 * 13 12 11 23 23 C 1.50702 * 109.47301 * 89.99649 * 22 13 12 24 24 C 1.38668 * 120.42065 * 269.72071 * 23 22 13 25 25 C 1.38626 * 118.42460 * 179.78313 * 24 23 22 26 26 C 1.38224 * 119.15700 * 0.51423 * 25 24 23 27 27 N 1.31855 * 120.76704 * 359.72363 * 26 25 24 28 28 C 1.31893 * 121.72370 * 0.02562 * 27 26 25 29 29 H 1.09003 * 109.46752 * 59.99613 * 1 2 3 30 30 H 1.08995 * 109.47298 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46917 * 300.00338 * 1 2 3 32 32 H 1.09000 * 109.47238 * 120.00304 * 2 1 3 33 33 H 1.08998 * 109.47295 * 60.00521 * 3 2 1 34 34 H 1.09007 * 109.47024 * 179.97438 * 3 2 1 35 35 H 1.08994 * 109.47576 * 299.99643 * 3 2 1 36 36 H 1.09002 * 109.47110 * 59.99799 * 6 4 2 37 37 H 1.09003 * 109.47619 * 180.02562 * 6 4 2 38 38 H 1.09008 * 109.47218 * 300.00317 * 6 4 2 39 39 H 0.97000 * 120.00383 * 0.02562 * 9 7 4 40 40 H 1.09000 * 109.46979 * 299.99539 * 10 9 7 41 41 H 1.09000 * 109.47617 * 59.99576 * 10 9 7 42 42 H 1.09003 * 109.46843 * 300.00199 * 11 10 9 43 43 H 1.09007 * 109.47008 * 59.99650 * 11 10 9 44 44 H 1.09003 * 109.47573 * 300.00113 * 12 11 10 45 45 H 1.09007 * 109.47024 * 60.00021 * 12 11 10 46 46 H 0.97006 * 119.99715 * 179.97438 * 17 16 14 47 47 H 1.09003 * 109.47038 * 209.99846 * 22 13 12 48 48 H 1.08999 * 109.47064 * 329.99485 * 22 13 12 49 49 H 1.08005 * 120.78907 * 0.02562 * 24 23 22 50 50 H 1.08001 * 120.42126 * 180.22044 * 25 24 23 51 51 H 1.08002 * 119.62314 * 179.75083 * 26 25 24 52 52 H 1.07992 * 119.61855 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 1 1.6767 -0.2074 -2.1392 6 6 3.5699 -0.7219 -1.2489 7 6 1.5376 -2.1421 -1.2492 8 8 0.8407 -2.5389 -0.3394 9 7 1.8628 -2.9718 -2.2603 10 6 1.3740 -4.3528 -2.2606 11 6 1.8840 -5.0742 -3.5097 12 6 1.3741 -6.5167 -3.5097 13 7 1.8620 -7.2072 -4.7061 14 6 3.1098 -7.7710 -4.7101 15 1 3.9156 -7.3032 -4.1639 16 6 3.3392 -8.9439 -5.4164 17 7 2.3379 -9.7522 -5.6926 18 14 5.0690 -9.3748 -5.9746 19 1 5.7457 -10.1708 -4.9194 20 1 5.0012 -10.1696 -7.2273 21 1 5.8349 -8.1268 -6.2211 22 6 1.0149 -7.2944 -5.8982 23 6 1.2738 -6.1049 -6.7866 24 6 0.5315 -4.9431 -6.6385 25 6 0.8075 -3.8725 -7.4748 26 6 1.7992 -4.0017 -8.4291 27 7 2.4819 -5.1237 -8.5448 28 6 2.2499 -6.1605 -7.7632 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.6768 1.9563 0.8900 34 1 3.1301 1.4424 0.0005 35 1 1.6768 1.9563 -0.8899 36 1 3.9329 -1.2359 -0.3589 37 1 3.9333 -1.2354 -2.1392 38 1 3.9337 0.3057 -1.2487 39 1 2.4205 -2.6545 -2.9878 40 1 1.7373 -4.8670 -1.3708 41 1 0.2839 -4.3525 -2.2603 42 1 1.5211 -4.5601 -4.3998 43 1 2.9741 -5.0745 -3.5095 44 1 1.7373 -7.0305 -2.6197 45 1 0.2840 -6.5166 -3.5098 46 1 2.4981 -10.5717 -6.1864 47 1 1.2455 -8.2108 -6.4415 48 1 -0.0333 -7.3032 -5.5992 49 1 -0.2407 -4.8725 -5.8867 50 1 0.2515 -2.9510 -7.3852 51 1 2.0177 -3.1738 -9.0873 52 1 2.8299 -7.0629 -7.8874 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230861908.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:16:50 Heat of formation + Delta-G solvation = -21.607749 kcal Electronic energy + Delta-G solvation = -29145.079382 eV Core-core repulsion = 25336.666333 eV Total energy + Delta-G solvation = -3808.413049 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.12617 -40.89102 -38.15271 -37.18817 -36.15061 -33.96775 -33.56881 -32.61490 -31.93896 -30.77187 -28.15838 -27.60035 -26.98612 -25.23772 -24.25891 -24.01568 -22.59297 -22.12607 -21.74777 -20.44206 -18.71677 -18.13828 -17.80742 -17.30500 -16.96351 -16.70795 -16.60634 -15.85940 -15.81842 -15.61519 -15.41191 -15.09503 -14.89237 -14.64932 -14.48885 -14.28952 -13.91830 -13.76100 -13.50397 -13.36744 -13.11493 -13.02115 -12.91865 -12.88085 -12.83968 -12.56701 -12.46992 -12.39356 -12.36232 -11.97129 -11.93546 -11.83427 -11.59306 -11.56334 -11.45069 -10.65529 -10.50213 -10.46347 -10.21093 -10.01858 -9.70048 -8.63461 -7.86859 -5.43300 0.39483 0.53386 1.41904 1.47865 1.54777 1.68746 2.25049 2.49323 3.01908 3.23598 3.67927 3.71381 3.73136 3.81636 3.96969 4.09922 4.13237 4.19806 4.26888 4.32131 4.32902 4.42199 4.47711 4.50461 4.57912 4.63865 4.66158 4.73031 4.83145 4.84491 4.92420 4.94040 4.96684 5.04356 5.05884 5.06785 5.12612 5.22989 5.29799 5.35040 5.35897 5.42869 5.48704 5.52474 5.53794 5.64514 5.69120 5.75601 6.01346 6.43673 6.60233 7.13369 7.21018 7.30767 7.82360 8.32587 9.09730 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.012138 B = 0.002907 C = 0.002638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2306.213123 B = 9629.915889 C =10611.915858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.076 4.076 3 C -0.144 4.144 4 C -0.101 4.101 5 H 0.117 0.883 6 C -0.145 4.145 7 C 0.509 3.491 8 O -0.578 6.578 9 N -0.719 5.719 10 C 0.132 3.868 11 C -0.127 4.127 12 C 0.149 3.851 13 N -0.585 5.585 14 C -0.258 4.258 15 H 0.053 0.947 16 C -0.026 4.026 17 N -0.909 5.909 18 Si 0.939 3.061 19 H -0.285 1.285 20 H -0.290 1.290 21 H -0.277 1.277 22 C 0.178 3.822 23 C -0.128 4.128 24 C -0.078 4.078 25 C -0.162 4.162 26 C 0.070 3.930 27 N -0.514 5.514 28 C 0.088 3.912 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.058 0.942 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.048 0.952 37 H 0.066 0.934 38 H 0.091 0.909 39 H 0.410 0.590 40 H 0.050 0.950 41 H 0.063 0.937 42 H 0.069 0.931 43 H 0.048 0.952 44 H 0.034 0.966 45 H 0.053 0.947 46 H 0.253 0.747 47 H 0.076 0.924 48 H 0.045 0.955 49 H 0.142 0.858 50 H 0.167 0.833 51 H 0.179 0.821 52 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.808 22.047 3.684 22.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.095 4.095 3 C -0.201 4.201 4 C -0.122 4.122 5 H 0.134 0.866 6 C -0.202 4.202 7 C 0.297 3.703 8 O -0.458 6.458 9 N -0.371 5.371 10 C 0.008 3.992 11 C -0.167 4.167 12 C 0.023 3.977 13 N -0.304 5.304 14 C -0.389 4.389 15 H 0.071 0.929 16 C -0.224 4.224 17 N -0.553 5.553 18 Si 0.768 3.232 19 H -0.211 1.211 20 H -0.216 1.216 21 H -0.202 1.202 22 C 0.052 3.948 23 C -0.133 4.133 24 C -0.105 4.105 25 C -0.181 4.181 26 C -0.088 4.088 27 N -0.224 5.224 28 C -0.068 4.068 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.067 0.933 37 H 0.085 0.915 38 H 0.110 0.890 39 H 0.246 0.754 40 H 0.068 0.932 41 H 0.081 0.919 42 H 0.088 0.912 43 H 0.067 0.933 44 H 0.053 0.947 45 H 0.072 0.928 46 H 0.063 0.937 47 H 0.094 0.906 48 H 0.063 0.937 49 H 0.160 0.840 50 H 0.184 0.816 51 H 0.196 0.804 52 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -2.653 21.469 3.638 21.936 hybrid contribution 0.596 -0.978 0.063 1.148 sum -2.057 20.491 3.701 20.923 Atomic orbital electron populations 1.22025 0.95512 1.02363 1.01581 1.20885 0.95890 0.96623 0.96077 1.21885 1.01689 0.93985 1.02543 1.21438 0.98299 0.90624 1.01817 0.86559 1.21862 0.91734 1.04239 1.02372 1.21313 0.79236 0.88830 0.80908 1.90622 1.39705 1.78196 1.37293 1.46070 1.53452 1.12019 1.25544 1.21137 0.98757 0.81360 0.97989 1.22172 1.00566 0.97479 0.96524 1.20841 0.96843 0.90837 0.89170 1.43842 1.15795 1.62514 1.08263 1.19085 0.87191 1.02365 1.30220 0.92932 1.25541 0.99259 0.94984 1.02593 1.70078 1.31959 1.10887 1.42340 0.85728 0.82057 0.77749 0.77691 1.21121 1.21599 1.20241 1.19853 0.92529 0.94882 0.87557 1.21907 0.96138 0.99142 0.96107 1.21650 0.98399 0.92035 0.98395 1.22385 0.99272 1.00258 0.96209 1.23187 0.92820 0.95166 0.97658 1.67601 1.27447 1.01182 1.26144 1.22324 0.95841 0.96305 0.92367 0.92396 0.92754 0.92673 0.92660 0.92292 0.91356 0.91579 0.93293 0.91469 0.89014 0.75371 0.93189 0.91896 0.91195 0.93288 0.94729 0.92839 0.93746 0.90613 0.93684 0.84043 0.81572 0.80412 0.86279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.04 8.87 71.98 0.64 -2.41 16 2 C -0.08 -1.30 2.15 -10.80 -0.02 -1.32 16 3 C -0.14 -1.64 8.84 71.98 0.64 -1.00 16 4 C -0.10 -1.63 2.32 -11.54 -0.03 -1.66 16 5 H 0.12 1.42 8.14 -2.38 -0.02 1.40 16 6 C -0.14 -1.90 8.74 71.98 0.63 -1.27 16 7 C 0.51 12.26 6.86 87.66 0.60 12.86 16 8 O -0.58 -18.59 13.66 -3.03 -0.04 -18.63 16 9 N -0.72 -16.23 5.45 -463.05 -2.52 -18.75 16 10 C 0.13 3.59 5.67 86.38 0.49 4.08 16 11 C -0.13 -3.88 5.62 30.59 0.17 -3.70 16 12 C 0.15 5.59 5.72 86.38 0.49 6.09 16 13 N -0.59 -26.49 2.44 -706.33 -1.72 -28.22 16 14 C -0.26 -13.30 9.47 84.04 0.80 -12.50 16 15 H 0.05 2.75 7.93 -2.91 -0.02 2.73 16 16 C -0.03 -1.37 4.94 84.86 0.42 -0.95 16 17 N -0.91 -50.40 11.36 21.65 0.25 -50.16 16 18 Si 0.94 43.55 29.61 68.60 2.03 45.58 16 19 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 20 H -0.29 -13.49 7.11 99.48 0.71 -12.79 16 21 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 22 C 0.18 7.72 5.49 85.63 0.47 8.19 16 23 C -0.13 -4.83 5.46 -19.77 -0.11 -4.93 16 24 C -0.08 -2.27 8.07 22.47 0.18 -2.08 16 25 C -0.16 -3.86 10.11 22.36 0.23 -3.63 16 26 C 0.07 1.90 11.18 84.69 0.95 2.85 16 27 N -0.51 -18.76 10.36 -195.84 -2.03 -20.79 16 28 C 0.09 3.57 10.86 84.67 0.92 4.49 16 29 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.05 1.40 5.51 -2.39 -0.01 1.39 16 31 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.05 1.16 8.10 -2.39 -0.02 1.14 16 33 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.07 0.65 6.43 -2.38 -0.02 0.63 16 35 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.07 0.81 7.57 -2.39 -0.02 0.79 16 38 H 0.09 0.83 6.43 -2.38 -0.02 0.81 16 39 H 0.41 7.40 7.89 -92.71 -0.73 6.66 16 40 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 41 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 42 H 0.07 2.04 6.20 -2.39 -0.01 2.03 16 43 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 44 H 0.03 1.39 8.09 -2.39 -0.02 1.37 16 45 H 0.05 1.84 7.83 -2.38 -0.02 1.82 16 46 H 0.25 13.69 8.31 -92.70 -0.77 12.92 16 47 H 0.08 3.86 5.30 -2.39 -0.01 3.85 16 48 H 0.04 1.81 7.81 -2.39 -0.02 1.79 16 49 H 0.14 3.53 8.04 -2.91 -0.02 3.51 16 50 H 0.17 2.53 8.06 -2.91 -0.02 2.51 16 51 H 0.18 3.47 8.06 -2.91 -0.02 3.45 16 52 H 0.12 5.44 8.06 -2.91 -0.02 5.41 16 Total: -1.00 -65.70 413.46 3.58 -62.12 By element: Atomic # 1 Polarization: 25.59 SS G_CDS: 0.16 Total: 25.76 kcal Atomic # 6 Polarization: -4.37 SS G_CDS: 7.46 Total: 3.09 kcal Atomic # 7 Polarization: -111.89 SS G_CDS: -6.03 Total: -117.92 kcal Atomic # 8 Polarization: -18.59 SS G_CDS: -0.04 Total: -18.63 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Total: -65.70 3.58 -62.12 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230861908.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.512 kcal (2) G-P(sol) polarization free energy of solvation -65.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds