Wall clock time and date at job start Tue Mar 31 2020 18:42:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35891 * 116.99972 * 2 1 4 4 C 1.38611 * 120.02258 * 359.97438 * 3 2 1 5 5 C 1.38795 * 119.87491 * 180.02562 * 4 3 2 6 6 N 1.39672 * 120.04624 * 180.02562 * 5 4 3 7 7 C 1.46498 * 119.99695 * 0.02562 * 6 5 4 8 8 C 1.46497 * 119.99706 * 179.97438 * 6 5 4 9 9 C 1.38971 * 119.90470 * 359.97438 * 5 4 3 10 10 C 1.38105 * 120.03782 * 0.02562 * 9 5 4 11 11 C 1.38223 * 120.12868 * 0.02562 * 10 9 5 12 12 C 1.50699 * 119.95385 * 179.97438 * 11 10 9 13 13 N 1.46899 * 109.46986 * 259.99590 * 12 11 10 14 14 C 1.46950 * 111.00220 * 293.80050 * 13 12 11 15 15 C 1.53051 * 109.36839 * 176.81067 * 14 13 12 16 16 N 1.46952 * 109.36276 * 58.40044 * 15 14 13 17 17 C 1.46899 * 110.99986 * 176.81267 * 16 15 14 18 18 C 1.50700 * 109.47172 * 293.79839 * 17 16 15 19 19 H 1.07999 * 119.99998 * 0.02562 * 18 17 16 20 20 C 1.37880 * 119.99811 * 179.97438 * 18 17 16 21 21 N 1.31512 * 120.00445 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99763 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47407 * 59.99972 * 22 20 18 24 24 H 1.48502 * 109.47355 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.47369 * 300.00151 * 22 20 18 26 26 C 1.46954 * 110.88348 * 300.67862 * 16 15 14 27 27 C 1.46962 * 111.00315 * 169.99773 * 13 12 11 28 28 H 1.09005 * 109.46326 * 60.00535 * 1 2 3 29 29 H 1.09000 * 109.47372 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47246 * 300.00717 * 1 2 3 31 31 H 1.08005 * 120.06230 * 0.28973 * 4 3 2 32 32 H 1.08997 * 109.47629 * 90.00068 * 7 6 5 33 33 H 1.09009 * 109.46473 * 209.99563 * 7 6 5 34 34 H 1.09000 * 109.47502 * 329.99180 * 7 6 5 35 35 H 1.08999 * 109.46928 * 90.00617 * 8 6 5 36 36 H 1.09002 * 109.46634 * 210.00021 * 8 6 5 37 37 H 1.08995 * 109.47457 * 330.00105 * 8 6 5 38 38 H 1.08004 * 119.97746 * 180.02562 * 9 5 4 39 39 H 1.08004 * 119.93923 * 179.97438 * 10 9 5 40 40 H 1.08998 * 109.47054 * 19.99178 * 12 11 10 41 41 H 1.08995 * 109.47528 * 139.99681 * 12 11 10 42 42 H 1.09001 * 109.49085 * 296.77787 * 14 13 12 43 43 H 1.08998 * 109.49190 * 56.84283 * 14 13 12 44 44 H 1.09000 * 109.49152 * 298.43381 * 15 14 13 45 45 H 1.09002 * 109.49145 * 178.36948 * 15 14 13 46 46 H 1.09001 * 109.47436 * 53.80140 * 17 16 15 47 47 H 1.08997 * 109.47320 * 173.79786 * 17 16 15 48 48 H 0.96998 * 120.00632 * 179.97438 * 21 20 18 49 49 H 1.09001 * 109.49257 * 299.35657 * 26 16 15 50 50 H 1.08998 * 109.49542 * 179.28840 * 26 16 15 51 51 H 1.08995 * 109.48614 * 303.15996 * 27 13 12 52 52 H 1.09000 * 109.48456 * 63.21872 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2915 2.3736 -0.0005 5 6 1.9248 3.6086 -0.0011 6 7 1.1681 4.7826 -0.0011 7 6 -0.2951 4.7108 0.0001 8 6 1.8376 6.0856 -0.0011 9 6 3.3129 3.6755 -0.0005 10 6 4.0610 2.5146 0.0000 11 6 3.4318 1.2838 -0.0005 12 6 4.2519 0.0195 -0.0005 13 7 4.3170 -0.5219 -1.3646 14 6 2.9924 -0.9682 -1.8179 15 6 3.0877 -1.4502 -3.2674 16 7 4.0665 -2.5428 -3.3541 17 6 4.1317 -3.0842 -4.7182 18 6 2.8236 -3.7515 -5.0568 19 1 2.0237 -3.7710 -4.3314 20 6 2.6476 -4.3361 -6.2930 21 7 3.6211 -4.3110 -7.1769 22 14 1.0259 -5.1625 -6.7130 23 1 -0.0736 -4.1680 -6.6267 24 1 1.0913 -5.7089 -8.0923 25 1 0.7703 -6.2673 -5.7541 26 6 5.3913 -2.0965 -2.9009 27 6 5.2960 -1.6145 -1.4514 28 1 -0.3632 0.5138 -0.8901 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 0.2129 2.3187 0.0038 32 1 -0.6574 4.6935 1.0279 33 1 -0.7020 5.5818 -0.5139 34 1 -0.6149 3.8039 -0.5132 35 1 2.0036 6.4088 -1.0287 36 1 1.2120 6.8155 0.5128 37 1 2.7953 6.0021 0.5127 38 1 3.8069 4.6359 -0.0005 39 1 5.1396 2.5684 0.0000 40 1 5.2597 0.2402 0.3512 41 1 3.7890 -0.7139 0.6597 42 1 2.6478 -1.7858 -1.1847 43 1 2.2882 -0.1385 -1.7561 44 1 3.4061 -0.6253 -3.9047 45 1 2.1123 -1.8088 -3.5963 46 1 4.3190 -2.2735 -5.4223 47 1 4.9388 -3.8139 -4.7813 48 1 3.4975 -4.7225 -8.0465 49 1 5.7359 -1.2789 -3.5341 50 1 6.0955 -2.9262 -2.9626 51 1 6.2713 -1.2559 -1.1225 52 1 4.9776 -2.4394 -0.8141 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001231853107.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:54 Heat of formation + Delta-G solvation = 2.257169 kcal Electronic energy + Delta-G solvation = -29711.917321 eV Core-core repulsion = 25904.539133 eV Total energy + Delta-G solvation = -3807.378188 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.49531 -39.90827 -39.07101 -37.26331 -36.11186 -34.54163 -32.11150 -31.69848 -31.30764 -29.72993 -29.09346 -27.99415 -27.51217 -25.84434 -24.60160 -23.89737 -23.05548 -22.78475 -21.42638 -20.56063 -18.91823 -18.48350 -17.61914 -17.41409 -16.86570 -16.71345 -16.30174 -16.13676 -15.88872 -15.80557 -15.66908 -15.55499 -15.25227 -15.03003 -14.87130 -14.42675 -14.14122 -13.90422 -13.44207 -13.39551 -13.36908 -13.20645 -13.00049 -12.92041 -12.81176 -12.75148 -12.67569 -12.37719 -12.26836 -12.16528 -12.01222 -11.97001 -11.84962 -11.66062 -11.31054 -11.17482 -10.61502 -10.44602 -9.28729 -9.20671 -9.00749 -8.20631 -8.11573 -6.31357 0.59078 0.67644 1.39545 1.43759 1.51674 2.22484 2.40006 2.48524 2.81447 3.10949 3.30243 3.33575 3.90088 4.00546 4.08496 4.15097 4.21728 4.26550 4.29371 4.33558 4.39104 4.40871 4.47634 4.52106 4.54477 4.57829 4.68320 4.71958 4.73738 4.75236 4.79627 4.81645 4.89568 4.92815 4.94666 5.01183 5.02298 5.08085 5.14237 5.21512 5.25113 5.30044 5.45363 5.63501 5.73021 5.85540 6.03266 6.17088 6.19153 6.32846 6.38730 6.42512 6.64244 6.65307 6.83968 7.38091 8.90677 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.014025 B = 0.002849 C = 0.002614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1995.970082 B = 9827.162529 C =10707.450181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.326 6.326 3 C 0.165 3.835 4 C -0.294 4.294 5 C 0.239 3.761 6 N -0.643 5.643 7 C 0.088 3.912 8 C 0.089 3.911 9 C -0.240 4.240 10 C -0.022 4.022 11 C -0.183 4.183 12 C 0.117 3.883 13 N -0.542 5.542 14 C 0.086 3.914 15 C 0.072 3.928 16 N -0.544 5.544 17 C 0.209 3.791 18 C -0.524 4.524 19 H 0.061 0.939 20 C 0.001 3.999 21 N -0.935 5.935 22 Si 0.972 3.028 23 H -0.267 1.267 24 H -0.281 1.281 25 H -0.267 1.267 26 C 0.055 3.945 27 C 0.070 3.930 28 H 0.057 0.943 29 H 0.107 0.893 30 H 0.068 0.932 31 H 0.139 0.861 32 H 0.055 0.945 33 H 0.083 0.917 34 H 0.062 0.938 35 H 0.049 0.951 36 H 0.084 0.916 37 H 0.074 0.926 38 H 0.140 0.860 39 H 0.143 0.857 40 H 0.095 0.905 41 H 0.031 0.969 42 H 0.029 0.971 43 H 0.087 0.913 44 H 0.007 0.993 45 H 0.062 0.938 46 H -0.043 1.043 47 H 0.005 0.995 48 H 0.265 0.735 49 H 0.019 0.981 50 H 0.073 0.927 51 H 0.102 0.898 52 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.460 20.879 20.192 29.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.239 6.239 3 C 0.118 3.882 4 C -0.317 4.317 5 C 0.135 3.865 6 N -0.354 5.354 7 C -0.054 4.054 8 C -0.053 4.053 9 C -0.262 4.262 10 C -0.041 4.041 11 C -0.186 4.186 12 C -0.009 4.009 13 N -0.267 5.267 14 C -0.042 4.042 15 C -0.056 4.056 16 N -0.269 5.269 17 C 0.083 3.917 18 C -0.563 4.563 19 H 0.079 0.921 20 C -0.197 4.197 21 N -0.576 5.576 22 Si 0.795 3.205 23 H -0.192 1.192 24 H -0.206 1.206 25 H -0.192 1.192 26 C -0.074 4.074 27 C -0.058 4.058 28 H 0.075 0.925 29 H 0.126 0.874 30 H 0.086 0.914 31 H 0.156 0.844 32 H 0.074 0.926 33 H 0.101 0.899 34 H 0.081 0.919 35 H 0.068 0.932 36 H 0.103 0.897 37 H 0.092 0.908 38 H 0.157 0.843 39 H 0.161 0.839 40 H 0.114 0.886 41 H 0.049 0.951 42 H 0.047 0.953 43 H 0.105 0.895 44 H 0.025 0.975 45 H 0.081 0.919 46 H -0.025 1.025 47 H 0.023 0.977 48 H 0.074 0.926 49 H 0.038 0.962 50 H 0.091 0.909 51 H 0.120 0.880 52 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -5.455 20.808 20.026 29.390 hybrid contribution -0.843 -0.548 -0.916 1.361 sum -6.298 20.260 19.110 28.554 Atomic orbital electron populations 1.23216 0.77441 1.04872 1.01893 1.86248 1.22709 1.27057 1.87920 1.18726 0.91897 0.84049 0.93515 1.20749 1.00325 0.90778 1.19888 1.17720 0.91080 0.86119 0.91574 1.46582 1.05588 1.03491 1.79729 1.21755 0.78716 1.03233 1.01720 1.21787 0.98754 0.83130 1.01673 1.20773 0.91640 0.99451 1.14352 1.20791 1.00276 0.90005 0.93066 1.19002 0.90332 0.95817 1.13486 1.20696 0.99566 0.92766 0.87903 1.62276 1.07539 1.32926 1.23995 1.22105 0.90819 0.98358 0.92965 1.21982 0.96374 0.90830 0.96455 1.62229 1.07162 1.32082 1.25462 1.19348 0.96668 0.92312 0.83372 1.21406 0.99818 1.35637 0.99396 0.92077 1.25956 1.00906 0.96895 0.95970 1.70086 1.34426 1.46015 1.07045 0.85408 0.78937 0.78861 0.77249 1.19153 1.20633 1.19186 1.22166 0.91124 0.97929 0.96142 1.22093 0.96894 0.92143 0.94693 0.92452 0.87430 0.91376 0.84379 0.92637 0.89870 0.91907 0.93236 0.89748 0.90756 0.84283 0.83880 0.88641 0.95056 0.95292 0.89525 0.97492 0.91938 1.02544 0.97703 0.92616 0.96233 0.90891 0.88013 0.94740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 9.81 113.37 1.11 1.49 16 2 O -0.33 -8.62 6.59 -92.32 -0.61 -9.22 16 3 C 0.16 4.31 5.41 22.49 0.12 4.43 16 4 C -0.29 -6.68 8.19 22.49 0.18 -6.50 16 5 C 0.24 5.06 6.55 38.20 0.25 5.31 16 6 N -0.64 -10.37 3.41 -747.35 -2.55 -12.91 16 7 C 0.09 1.04 10.19 127.77 1.30 2.34 16 8 C 0.09 0.96 10.19 127.77 1.30 2.26 16 9 C -0.24 -4.92 9.20 22.41 0.21 -4.72 16 10 C -0.02 -0.49 9.65 22.23 0.21 -0.28 16 11 C -0.18 -4.78 5.18 -19.74 -0.10 -4.88 16 12 C 0.12 3.13 4.99 85.56 0.43 3.56 16 13 N -0.54 -17.71 4.70 -900.31 -4.23 -21.94 16 14 C 0.09 3.14 4.14 86.31 0.36 3.49 16 15 C 0.07 3.23 5.43 86.31 0.47 3.70 16 16 N -0.54 -26.20 4.70 -900.31 -4.23 -30.43 16 17 C 0.21 12.03 4.72 85.56 0.40 12.43 16 18 C -0.52 -31.30 8.47 25.60 0.22 -31.08 16 19 H 0.06 3.58 7.13 -2.91 -0.02 3.56 16 20 C 0.00 0.04 5.46 84.66 0.46 0.50 16 21 N -0.94 -58.29 13.29 21.45 0.28 -58.00 16 22 Si 0.97 45.54 29.54 68.60 2.03 47.57 16 23 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 24 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 25 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 26 C 0.05 2.20 5.61 86.31 0.48 2.69 16 27 C 0.07 2.24 5.61 86.31 0.48 2.72 16 28 H 0.06 1.03 7.66 -2.38 -0.02 1.01 16 29 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.07 1.01 7.66 -2.39 -0.02 0.99 16 31 H 0.14 2.63 4.38 -2.91 -0.01 2.62 16 32 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.08 0.68 8.07 -2.38 -0.02 0.66 16 34 H 0.06 0.80 6.20 -2.39 -0.01 0.79 16 35 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 36 H 0.08 0.57 8.07 -2.39 -0.02 0.55 16 37 H 0.07 0.74 6.19 -2.39 -0.01 0.72 16 38 H 0.14 2.22 6.14 -2.91 -0.02 2.20 16 39 H 0.14 2.56 8.03 -2.91 -0.02 2.54 16 40 H 0.10 2.09 7.88 -2.39 -0.02 2.07 16 41 H 0.03 0.89 7.83 -2.39 -0.02 0.87 16 42 H 0.03 1.11 7.88 -2.39 -0.02 1.10 16 43 H 0.09 3.07 4.69 -2.39 -0.01 3.06 16 44 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 45 H 0.06 2.98 6.79 -2.39 -0.02 2.96 16 46 H -0.04 -2.71 8.12 -2.39 -0.02 -2.73 16 47 H 0.00 0.30 8.03 -2.39 -0.02 0.28 16 48 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 49 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 50 H 0.07 2.83 8.07 -2.39 -0.02 2.81 16 51 H 0.10 2.60 8.07 -2.39 -0.02 2.59 16 52 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -73.22 396.39 -0.52 -73.74 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: 0.89 Total: 13.72 kcal Atomic # 6 Polarization: -10.41 SS G_CDS: 7.89 Total: -2.52 kcal Atomic # 7 Polarization: -112.56 SS G_CDS: -10.73 Total: -123.29 kcal Atomic # 8 Polarization: -8.62 SS G_CDS: -0.61 Total: -9.22 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.57 kcal Total: -73.22 -0.52 -73.74 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231853107.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.001 kcal (2) G-P(sol) polarization free energy of solvation -73.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.743 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds