Wall clock time and date at job start Tue Mar 31 2020 18:27:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46497 * 109.47298 * 2 1 4 4 C 1.36942 * 120.00081 * 275.30958 * 3 2 1 5 5 H 1.07999 * 119.99728 * 37.57932 * 4 3 2 6 6 C 1.38810 * 119.99677 * 217.57783 * 4 3 2 7 7 N 1.31612 * 120.00459 * 21.42377 * 6 4 3 8 8 Si 1.86809 * 119.99612 * 201.42273 * 6 4 3 9 9 H 1.48495 * 109.47006 * 60.00472 * 8 6 4 10 10 H 1.48502 * 109.46800 * 180.02562 * 8 6 4 11 11 H 1.48493 * 109.47098 * 300.00360 * 8 6 4 12 12 C 1.46499 * 119.99983 * 95.30915 * 3 2 1 13 13 C 1.52991 * 109.47259 * 270.00369 * 12 3 2 14 14 N 1.46507 * 109.47456 * 179.97438 * 13 12 3 15 15 C 1.34777 * 120.00052 * 179.97438 * 14 13 12 16 16 O 1.21547 * 119.99913 * 0.02562 * 15 14 13 17 17 C 1.47844 * 119.99923 * 180.02562 * 15 14 13 18 18 C 1.39566 * 120.14718 * 180.02562 * 17 15 14 19 19 C 1.37956 * 119.85852 * 180.27436 * 18 17 15 20 20 C 1.38365 * 120.13911 * 359.49463 * 19 18 17 21 21 C 1.50699 * 119.85306 * 180.25695 * 20 19 18 22 22 C 1.53006 * 109.46974 * 270.24920 * 21 20 19 23 23 N 1.46898 * 109.46843 * 179.97438 * 22 21 20 24 24 C 1.46896 * 111.00208 * 66.04843 * 23 22 21 25 25 C 1.46908 * 110.99875 * 189.99697 * 23 22 21 26 26 C 1.38357 * 120.29497 * 0.50271 * 20 19 18 27 27 C 1.37960 * 120.14079 * 359.75227 * 26 20 19 28 28 H 1.09005 * 109.47282 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46991 * 299.99971 * 1 2 3 30 30 H 1.08998 * 109.47337 * 59.99953 * 1 2 3 31 31 H 1.09001 * 109.46991 * 240.00029 * 2 1 3 32 32 H 1.09005 * 109.47176 * 120.00413 * 2 1 3 33 33 H 0.97001 * 120.00166 * 179.97438 * 7 6 4 34 34 H 1.09001 * 109.47135 * 150.00109 * 12 3 2 35 35 H 1.09010 * 109.47063 * 30.00322 * 12 3 2 36 36 H 1.08994 * 109.47545 * 59.99583 * 13 12 3 37 37 H 1.09007 * 109.47509 * 299.99741 * 13 12 3 38 38 H 0.96994 * 119.99493 * 0.02562 * 14 13 12 39 39 H 1.08000 * 120.07491 * 359.97438 * 18 17 15 40 40 H 1.07997 * 119.93053 * 179.71674 * 19 18 17 41 41 H 1.09003 * 109.47279 * 30.24567 * 21 20 19 42 42 H 1.08994 * 109.47269 * 150.25072 * 21 20 19 43 43 H 1.09003 * 109.46829 * 299.99922 * 22 21 20 44 44 H 1.08994 * 109.46999 * 59.99987 * 22 21 20 45 45 H 1.09006 * 109.47436 * 59.99526 * 24 23 22 46 46 H 1.09003 * 109.47705 * 179.97438 * 24 23 22 47 47 H 1.09002 * 109.46892 * 300.00025 * 24 23 22 48 48 H 1.09000 * 109.46395 * 60.00227 * 25 23 22 49 49 H 1.08994 * 109.47040 * 180.02562 * 25 23 22 50 50 H 1.09004 * 109.47048 * 300.00293 * 25 23 22 51 51 H 1.07994 * 119.93012 * 179.77127 * 26 20 19 52 52 H 1.08011 * 120.07029 * 179.97438 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1431 2.0633 -1.1808 5 1 1.4105 1.9278 -1.9627 6 6 3.2112 2.9289 -1.3728 7 7 4.3026 2.7980 -0.6490 8 14 3.0994 4.2795 -2.6585 9 1 1.9629 5.1785 -2.3344 10 1 4.3624 5.0606 -2.6668 11 1 2.8845 3.6725 -3.9966 12 6 2.3732 2.0326 1.2633 13 6 1.1426 2.7381 1.8366 14 7 1.4973 3.3891 3.1002 15 6 0.5649 4.0765 3.7891 16 8 -0.5704 4.1559 3.3623 17 6 0.9230 4.7339 5.0640 18 6 -0.0402 5.4460 5.7802 19 6 0.3018 6.0619 6.9663 20 6 1.5941 5.9660 7.4515 21 6 1.9592 6.6364 8.7508 22 6 2.4358 8.0634 8.4721 23 7 2.7912 8.7171 9.7387 24 6 3.9589 8.0727 10.3543 25 6 3.0257 10.1539 9.5418 26 6 2.5538 5.2615 6.7466 27 6 2.2260 4.6454 5.5565 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 5.0491 3.4027 -0.7834 34 1 3.1617 2.7640 1.0860 35 1 2.7255 1.2832 1.9722 36 1 0.3542 2.0068 2.0139 37 1 0.7903 3.4876 1.1278 38 1 2.4034 3.3260 3.4406 39 1 -1.0501 5.5189 5.4043 40 1 -0.4415 6.6171 7.5192 41 1 1.0859 6.6659 9.4025 42 1 2.7570 6.0755 9.2375 43 1 3.3091 8.0339 7.8204 44 1 1.6380 8.6243 7.9854 45 1 4.8098 8.1385 9.6762 46 1 4.2007 8.5764 11.2902 47 1 3.7329 7.0250 10.5530 48 1 2.1213 10.6193 9.1500 49 1 3.2875 10.6132 10.4950 50 1 3.8428 10.2951 8.8343 51 1 3.5615 5.1935 7.1289 52 1 2.9762 4.0960 5.0069 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267249927.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:12 Heat of formation + Delta-G solvation = 5.389138 kcal Electronic energy + Delta-G solvation = -27922.966179 eV Core-core repulsion = 24115.723803 eV Total energy + Delta-G solvation = -3807.242376 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -40.13712 -38.72906 -37.64631 -36.29836 -34.18355 -33.36715 -31.89710 -31.12705 -29.94483 -29.06853 -27.99794 -27.41895 -25.29313 -24.21506 -22.77929 -22.71028 -21.65918 -21.13715 -20.37632 -19.94162 -17.88470 -16.63100 -16.23180 -16.18298 -15.61639 -15.36350 -15.18944 -14.93091 -14.73195 -14.71724 -14.42059 -13.90617 -13.77581 -13.63348 -13.39888 -13.16154 -13.08653 -12.78820 -12.56928 -12.39085 -12.26517 -12.16532 -12.05558 -11.79191 -11.53912 -11.46184 -11.39747 -11.12745 -10.99114 -10.75904 -10.64118 -10.53999 -10.10151 -9.89611 -9.86062 -9.56283 -9.11911 -8.92805 -8.78912 -8.56402 -8.43137 -6.63814 -5.85125 -3.43685 0.78334 1.25208 2.97929 3.34871 3.40623 3.44976 3.51677 3.55440 3.88794 4.45312 4.49023 4.58030 4.70659 4.76981 4.79544 4.83816 4.97665 5.02454 5.13547 5.18719 5.22641 5.25250 5.27234 5.33345 5.46655 5.48595 5.53455 5.61798 5.65322 5.78352 5.86973 5.98730 6.09369 6.15968 6.17770 6.30269 6.37650 6.38262 6.43472 6.50223 6.57013 6.58066 6.68310 6.75370 6.86678 6.91105 7.01305 7.16255 7.52068 7.78896 7.91047 8.46484 8.55725 9.13192 9.75174 10.33223 11.15055 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.014396 B = 0.002150 C = 0.002003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1944.455128 B =13021.704229 C =13978.170038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.141 3.859 3 N -0.579 5.579 4 C -0.261 4.261 5 H 0.061 0.939 6 C 0.013 3.987 7 N -0.888 5.888 8 Si 0.897 3.103 9 H -0.281 1.281 10 H -0.290 1.290 11 H -0.280 1.280 12 C 0.137 3.863 13 C 0.097 3.903 14 N -0.714 5.714 15 C 0.548 3.452 16 O -0.545 6.545 17 C -0.129 4.129 18 C -0.060 4.060 19 C -0.124 4.124 20 C -0.065 4.065 21 C -0.078 4.078 22 C 0.059 3.941 23 N -0.549 5.549 24 C 0.019 3.981 25 C 0.023 3.977 26 C -0.124 4.124 27 C -0.084 4.084 28 H 0.037 0.963 29 H 0.044 0.956 30 H 0.050 0.950 31 H 0.046 0.954 32 H 0.034 0.966 33 H 0.255 0.745 34 H 0.098 0.902 35 H 0.029 0.971 36 H 0.053 0.947 37 H 0.065 0.935 38 H 0.396 0.604 39 H 0.135 0.865 40 H 0.128 0.872 41 H 0.082 0.918 42 H 0.074 0.926 43 H 0.038 0.962 44 H 0.077 0.923 45 H 0.026 0.974 46 H 0.067 0.933 47 H 0.072 0.928 48 H 0.069 0.931 49 H 0.068 0.932 50 H 0.026 0.974 51 H 0.125 0.875 52 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.694 8.643 22.119 23.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.015 3.985 3 N -0.300 5.300 4 C -0.390 4.390 5 H 0.079 0.921 6 C -0.187 4.187 7 N -0.530 5.530 8 Si 0.726 3.274 9 H -0.208 1.208 10 H -0.216 1.216 11 H -0.206 1.206 12 C 0.010 3.990 13 C -0.028 4.028 14 N -0.365 5.365 15 C 0.335 3.665 16 O -0.424 6.424 17 C -0.132 4.132 18 C -0.079 4.079 19 C -0.142 4.142 20 C -0.066 4.066 21 C -0.116 4.116 22 C -0.069 4.069 23 N -0.273 5.273 24 C -0.129 4.129 25 C -0.125 4.125 26 C -0.142 4.142 27 C -0.102 4.102 28 H 0.056 0.944 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.053 0.947 33 H 0.065 0.935 34 H 0.116 0.884 35 H 0.047 0.953 36 H 0.072 0.928 37 H 0.084 0.916 38 H 0.231 0.769 39 H 0.153 0.847 40 H 0.145 0.855 41 H 0.101 0.899 42 H 0.093 0.907 43 H 0.056 0.944 44 H 0.096 0.904 45 H 0.045 0.955 46 H 0.086 0.914 47 H 0.090 0.910 48 H 0.088 0.912 49 H 0.087 0.913 50 H 0.044 0.956 51 H 0.143 0.857 52 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -1.699 8.689 22.057 23.767 hybrid contribution 1.109 0.846 -1.092 1.772 sum -0.590 9.535 20.965 23.039 Atomic orbital electron populations 1.22391 0.99899 0.99091 1.01417 1.20882 0.91778 0.86955 0.98902 1.43596 1.76053 1.08288 1.02043 1.18980 1.04758 1.21328 0.93975 0.92104 1.25183 0.94152 1.01208 0.98156 1.69981 1.03133 1.37354 1.42541 0.86464 0.76977 0.82323 0.81631 1.20761 1.21588 1.20590 1.21058 0.94544 0.96949 0.86470 1.22503 1.01173 0.96597 0.82558 1.46081 1.13012 1.52852 1.24510 1.18298 0.85306 0.78957 0.83964 1.90746 1.20353 1.61482 1.69835 1.20132 0.94757 1.01929 0.96396 1.21283 0.99580 0.93684 0.93349 1.21018 0.96099 1.00677 0.96448 1.19990 0.93689 0.96843 0.96095 1.20627 1.02467 0.94453 0.94045 1.22144 1.00224 0.94546 0.90009 1.61999 1.36921 1.03192 1.25161 1.22466 0.90973 1.00364 0.99135 1.22388 1.00735 0.88185 1.01176 1.20955 0.99289 0.98729 0.95257 1.21373 0.95324 0.97826 0.95709 0.94443 0.93659 0.93101 0.93553 0.94730 0.93474 0.88406 0.95301 0.92845 0.91616 0.76944 0.84680 0.85452 0.89892 0.90742 0.94378 0.90416 0.95514 0.91417 0.90964 0.91232 0.91307 0.95554 0.85675 0.85336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.14 10.21 37.16 0.38 -2.76 16 2 C 0.14 2.96 6.44 -4.05 -0.03 2.93 16 3 N -0.58 -14.07 2.43 -173.24 -0.42 -14.49 16 4 C -0.26 -7.00 9.45 -15.06 -0.14 -7.14 16 5 H 0.06 1.65 7.92 -52.49 -0.42 1.23 16 6 C 0.01 0.36 4.95 -17.43 -0.09 0.27 16 7 N -0.89 -24.67 11.47 55.49 0.64 -24.04 16 8 Si 0.90 21.44 29.61 -169.99 -5.03 16.41 16 9 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 10 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 12 C 0.14 3.05 5.45 -4.05 -0.02 3.03 16 13 C 0.10 2.00 6.00 -4.04 -0.02 1.97 16 14 N -0.71 -12.36 5.51 -61.25 -0.34 -12.70 16 15 C 0.55 9.73 7.77 -12.33 -0.10 9.64 16 16 O -0.55 -11.63 16.35 5.32 0.09 -11.54 16 17 C -0.13 -1.82 5.87 -104.97 -0.62 -2.44 16 18 C -0.06 -0.76 9.59 -39.19 -0.38 -1.14 16 19 C -0.12 -1.26 9.68 -39.64 -0.38 -1.64 16 20 C -0.07 -0.61 5.14 -104.53 -0.54 -1.14 16 21 C -0.08 -0.57 5.26 -27.88 -0.15 -0.72 16 22 C 0.06 0.44 4.94 -3.82 -0.02 0.42 16 23 N -0.55 -4.05 5.02 -251.25 -1.26 -5.31 16 24 C 0.02 0.12 9.32 60.06 0.56 0.68 16 25 C 0.02 0.15 9.57 60.07 0.57 0.72 16 26 C -0.12 -1.21 9.68 -39.64 -0.38 -1.60 16 27 C -0.08 -0.97 9.54 -39.18 -0.37 -1.34 16 28 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.04 0.85 6.64 -51.93 -0.34 0.51 16 30 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 31 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 32 H 0.03 0.67 7.83 -51.93 -0.41 0.26 16 33 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 34 H 0.10 2.43 5.52 -51.93 -0.29 2.15 16 35 H 0.03 0.60 7.86 -51.92 -0.41 0.19 16 36 H 0.05 1.12 6.64 -51.93 -0.34 0.78 16 37 H 0.07 1.55 8.14 -51.92 -0.42 1.12 16 38 H 0.40 5.79 6.51 -40.82 -0.27 5.52 16 39 H 0.14 1.76 7.65 -52.49 -0.40 1.35 16 40 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 41 H 0.08 0.60 8.08 -51.93 -0.42 0.18 16 42 H 0.07 0.49 6.49 -51.93 -0.34 0.16 16 43 H 0.04 0.31 8.12 -51.93 -0.42 -0.11 16 44 H 0.08 0.60 8.06 -51.93 -0.42 0.19 16 45 H 0.03 0.16 8.14 -51.93 -0.42 -0.26 16 46 H 0.07 0.36 8.12 -51.93 -0.42 -0.06 16 47 H 0.07 0.41 6.47 -51.93 -0.34 0.07 16 48 H 0.07 0.41 8.12 -51.93 -0.42 -0.01 16 49 H 0.07 0.37 8.12 -51.93 -0.42 -0.06 16 50 H 0.03 0.17 8.14 -51.93 -0.42 -0.26 16 51 H 0.13 0.96 8.06 -52.49 -0.42 0.53 16 52 H 0.13 1.30 6.41 -52.48 -0.34 0.96 16 LS Contribution 418.36 15.07 6.30 6.30 Total: -1.00 -31.21 418.36 -10.67 -41.87 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -8.92 Total: 3.75 kcal Atomic # 6 Polarization: 1.46 SS G_CDS: -1.72 Total: -0.26 kcal Atomic # 7 Polarization: -55.15 SS G_CDS: -1.38 Total: -56.53 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: 0.09 Total: -11.54 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.03 Total: 16.41 kcal Total LS contribution 6.30 Total: 6.30 kcal Total: -31.21 -10.67 -41.87 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267249927.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.261 kcal (2) G-P(sol) polarization free energy of solvation -31.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.872 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds