Wall clock time and date at job start Tue Mar 31 2020 18:27:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46500 * 109.47076 * 2 1 4 4 C 1.36936 * 120.00041 * 275.30648 * 3 2 1 5 5 H 1.07996 * 120.00256 * 37.57953 * 4 3 2 6 6 C 1.38807 * 120.00075 * 217.58003 * 4 3 2 7 7 N 1.31622 * 120.00080 * 21.42741 * 6 4 3 8 8 Si 1.86803 * 120.00203 * 201.42524 * 6 4 3 9 9 H 1.48504 * 109.47158 * 90.00005 * 8 6 4 10 10 H 1.48494 * 109.47515 * 210.00107 * 8 6 4 11 11 H 1.48500 * 109.47059 * 330.00387 * 8 6 4 12 12 C 1.46499 * 120.00213 * 95.31064 * 3 2 1 13 13 C 1.52999 * 109.47010 * 270.00192 * 12 3 2 14 14 N 1.46505 * 109.47274 * 179.97438 * 13 12 3 15 15 C 1.34771 * 119.99855 * 179.97438 * 14 13 12 16 16 O 1.21631 * 120.00504 * 0.02562 * 15 14 13 17 17 C 1.47269 * 119.99919 * 179.97438 * 15 14 13 18 18 C 1.46693 * 126.94178 * 0.11589 * 17 15 14 19 19 C 1.34485 * 106.33197 * 180.29935 * 18 17 15 20 20 C 1.50699 * 125.57008 * 179.76028 * 19 18 17 21 21 N 1.36441 * 108.85422 * 359.76005 * 19 18 17 22 22 C 1.46506 * 124.84974 * 179.97438 * 21 19 18 23 23 C 1.52996 * 109.47383 * 270.00132 * 22 21 19 24 24 C 1.52997 * 117.50027 * 243.62119 * 23 22 21 25 25 C 1.52993 * 117.50024 * 174.99847 * 23 22 21 26 26 C 1.34654 * 110.30160 * 359.97438 * 21 19 18 27 27 C 1.50708 * 125.80220 * 180.02562 * 26 21 19 28 28 H 1.08998 * 109.47361 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47580 * 300.00273 * 1 2 3 30 30 H 1.09004 * 109.47235 * 60.00004 * 1 2 3 31 31 H 1.08996 * 109.47418 * 239.99570 * 2 1 3 32 32 H 1.09004 * 109.47235 * 119.99995 * 2 1 3 33 33 H 0.97000 * 119.99889 * 180.02562 * 7 6 4 34 34 H 1.08997 * 109.47520 * 149.99831 * 12 3 2 35 35 H 1.09005 * 109.47300 * 29.99810 * 12 3 2 36 36 H 1.08997 * 109.47273 * 59.99488 * 13 12 3 37 37 H 1.09003 * 109.46700 * 299.99410 * 13 12 3 38 38 H 0.97000 * 119.99871 * 359.97438 * 14 13 12 39 39 H 1.07998 * 126.83079 * 0.09795 * 18 17 15 40 40 H 1.08996 * 109.46818 * 270.00103 * 20 19 18 41 41 H 1.09004 * 109.47195 * 29.99981 * 20 19 18 42 42 H 1.09000 * 109.46749 * 149.99633 * 20 19 18 43 43 H 1.09000 * 109.46788 * 30.00534 * 22 21 19 44 44 H 1.09000 * 109.47151 * 149.99983 * 22 21 19 45 45 H 1.09002 * 115.54398 * 29.32952 * 23 22 21 46 46 H 1.09000 * 117.49548 * 359.97438 * 24 23 22 47 47 H 1.09005 * 117.49883 * 145.01817 * 24 23 22 48 48 H 1.09004 * 117.49647 * 214.97900 * 25 23 22 49 49 H 1.09003 * 117.50176 * 359.97438 * 25 23 22 50 50 H 1.09001 * 109.46863 * 90.00205 * 27 26 21 51 51 H 1.09000 * 109.47266 * 330.00144 * 27 26 21 52 52 H 1.09002 * 109.47015 * 210.00277 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.1431 2.0633 -1.1808 5 1 1.4106 1.9279 -1.9627 6 6 3.2111 2.9289 -1.3728 7 7 4.3026 2.7980 -0.6490 8 14 3.0994 4.2795 -2.6585 9 1 2.5376 5.5069 -2.0395 10 1 4.4549 4.5695 -3.1909 11 1 2.2167 3.8357 -3.7671 12 6 2.3731 2.0327 1.2632 13 6 1.1425 2.7382 1.8365 14 7 1.4972 3.3893 3.1001 15 6 0.5647 4.0766 3.7890 16 8 -0.5713 4.1561 3.3619 17 6 0.9211 4.7306 5.0594 18 6 2.2355 4.7342 5.7108 19 6 2.0939 5.4442 6.8442 20 6 3.1827 5.7162 7.8500 21 7 0.8034 5.8779 6.9345 22 6 0.2660 6.6838 8.0337 23 6 -0.2762 5.7597 9.1259 24 6 -1.7763 5.8188 9.4208 25 6 -0.7770 6.4100 10.4170 26 6 0.0943 5.4595 5.8691 27 6 -1.3644 5.7407 5.6153 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 5.0488 3.4031 -0.7829 34 1 3.1616 2.7641 1.0860 35 1 2.7254 1.2834 1.9722 36 1 0.3540 2.0068 2.0138 37 1 0.7902 3.4876 1.1277 38 1 2.4031 3.3256 3.4409 39 1 3.1366 4.2583 5.3532 40 1 3.1922 4.9238 8.5983 41 1 4.1467 5.7480 7.3423 42 1 2.9966 6.6736 8.3368 43 1 1.0578 7.3089 8.4466 44 1 -0.5391 7.3166 7.6604 45 1 0.2155 4.7904 9.2083 46 1 -2.3768 6.5164 8.8369 47 1 -2.2720 4.8882 9.6972 48 1 -0.6151 5.8683 11.3490 49 1 -0.7197 7.4962 10.4886 50 1 -1.4626 6.6666 5.0484 51 1 -1.8862 5.8404 6.5670 52 1 -1.7994 4.9187 5.0468 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267255472.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:22 Heat of formation + Delta-G solvation = 42.329808 kcal Electronic energy + Delta-G solvation = -28830.825669 eV Core-core repulsion = 25025.185161 eV Total energy + Delta-G solvation = -3805.640508 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.54169 -38.69399 -37.74951 -36.17270 -33.90103 -32.68184 -32.49663 -31.81612 -29.63546 -29.14600 -27.82529 -26.60674 -24.83288 -24.06444 -22.89571 -22.29193 -21.39895 -21.17423 -20.24378 -19.61746 -18.70267 -16.97085 -16.54890 -16.17821 -15.79758 -15.09233 -15.04304 -14.83503 -14.57622 -14.35053 -14.10610 -13.69135 -13.61374 -13.32659 -13.28076 -13.01541 -12.75443 -12.56265 -12.53839 -12.38887 -12.31352 -12.28248 -12.02318 -11.92638 -11.62625 -11.46119 -11.34579 -11.05330 -10.91979 -10.72353 -10.54991 -10.52981 -10.43019 -10.00741 -9.76036 -9.72421 -9.27279 -8.61410 -8.46009 -8.24509 -7.88717 -6.55374 -5.76529 -3.35426 1.92950 2.41848 2.62693 3.25889 3.40774 3.47876 3.49982 3.97010 4.00463 4.14011 4.29794 4.39876 4.53031 4.60593 4.69108 4.81868 4.82918 5.00250 5.08070 5.13233 5.26872 5.35001 5.36931 5.39328 5.45658 5.59490 5.59833 5.62798 5.64956 5.70759 5.73786 5.93960 6.03943 6.08290 6.24045 6.29058 6.33700 6.45929 6.54931 6.61458 6.77749 6.87654 6.98002 7.10005 7.11628 7.20517 7.24550 7.26126 7.66041 7.86727 8.25023 8.55294 8.92035 9.21848 9.83824 10.42072 11.23240 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.016216 B = 0.002483 C = 0.002369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.313567 B =11276.073171 C =11814.284731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.142 3.858 3 N -0.580 5.580 4 C -0.259 4.259 5 H 0.061 0.939 6 C 0.013 3.987 7 N -0.887 5.887 8 Si 0.896 3.104 9 H -0.285 1.285 10 H -0.291 1.291 11 H -0.277 1.277 12 C 0.138 3.862 13 C 0.101 3.899 14 N -0.716 5.716 15 C 0.584 3.416 16 O -0.561 6.561 17 C -0.226 4.226 18 C -0.163 4.163 19 C 0.006 3.994 20 C -0.081 4.081 21 N -0.437 5.437 22 C 0.132 3.868 23 C -0.174 4.174 24 C -0.175 4.175 25 C -0.171 4.171 26 C 0.103 3.897 27 C -0.092 4.092 28 H 0.036 0.964 29 H 0.045 0.955 30 H 0.049 0.951 31 H 0.045 0.955 32 H 0.034 0.966 33 H 0.254 0.746 34 H 0.098 0.902 35 H 0.028 0.972 36 H 0.050 0.950 37 H 0.062 0.938 38 H 0.396 0.604 39 H 0.145 0.855 40 H 0.069 0.931 41 H 0.080 0.920 42 H 0.060 0.940 43 H 0.094 0.906 44 H 0.091 0.909 45 H 0.111 0.889 46 H 0.097 0.903 47 H 0.097 0.903 48 H 0.098 0.902 49 H 0.097 0.903 50 H 0.073 0.927 51 H 0.059 0.941 52 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.893 7.515 23.743 25.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.015 3.985 3 N -0.301 5.301 4 C -0.388 4.388 5 H 0.079 0.921 6 C -0.188 4.188 7 N -0.530 5.530 8 Si 0.726 3.274 9 H -0.212 1.212 10 H -0.218 1.218 11 H -0.202 1.202 12 C 0.010 3.990 13 C -0.024 4.024 14 N -0.366 5.366 15 C 0.372 3.628 16 O -0.442 6.442 17 C -0.236 4.236 18 C -0.187 4.187 19 C -0.101 4.101 20 C -0.138 4.138 21 N -0.115 5.115 22 C 0.010 3.990 23 C -0.193 4.193 24 C -0.212 4.212 25 C -0.208 4.208 26 C -0.012 4.012 27 C -0.150 4.150 28 H 0.055 0.945 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.052 0.948 33 H 0.064 0.936 34 H 0.116 0.884 35 H 0.046 0.954 36 H 0.068 0.932 37 H 0.080 0.920 38 H 0.229 0.771 39 H 0.163 0.837 40 H 0.087 0.913 41 H 0.099 0.901 42 H 0.079 0.921 43 H 0.112 0.888 44 H 0.109 0.891 45 H 0.130 0.870 46 H 0.116 0.884 47 H 0.116 0.884 48 H 0.116 0.884 49 H 0.115 0.885 50 H 0.091 0.909 51 H 0.078 0.922 52 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -6.602 7.799 23.631 25.745 hybrid contribution 0.441 0.746 -0.415 0.961 sum -6.161 8.545 23.215 25.493 Atomic orbital electron populations 1.22392 0.99960 0.99000 1.01435 1.20865 0.91755 0.87037 0.98807 1.43615 1.76071 1.08275 1.02138 1.19021 1.04648 1.21194 0.93967 0.92121 1.25180 0.94187 1.01228 0.98162 1.70000 1.03177 1.37222 1.42572 0.86391 0.76852 0.82711 0.81455 1.21214 1.21762 1.20204 1.21054 0.94716 0.96899 0.86301 1.22365 1.00762 0.96400 0.82910 1.45887 1.13070 1.53344 1.24264 1.17358 0.84729 0.77947 0.82787 1.90692 1.20479 1.62825 1.70170 1.20259 0.94506 1.09894 0.98903 1.21830 0.97098 1.04325 0.95448 1.20127 0.85270 1.04880 0.99830 1.20295 0.95493 1.01429 0.96588 1.43463 1.08448 1.41971 1.17579 1.21395 0.99860 0.92222 0.85550 1.22670 0.97997 1.01571 0.97086 1.23095 0.91661 1.03339 1.03084 1.22969 1.03704 1.00676 0.93483 1.20212 0.94597 0.98543 0.87859 1.20553 0.88325 1.04365 1.01716 0.94535 0.93594 0.93146 0.93663 0.94769 0.93578 0.88447 0.95405 0.93210 0.91968 0.77083 0.83731 0.91258 0.90097 0.92098 0.88799 0.89113 0.87044 0.88417 0.88421 0.88369 0.88470 0.90879 0.92187 0.87974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.24 10.21 37.15 0.38 -2.87 16 2 C 0.14 3.07 6.44 -4.05 -0.03 3.04 16 3 N -0.58 -14.56 2.43 -173.25 -0.42 -14.98 16 4 C -0.26 -7.12 9.45 -15.06 -0.14 -7.26 16 5 H 0.06 1.68 7.92 -52.49 -0.42 1.27 16 6 C 0.01 0.35 4.95 -17.43 -0.09 0.27 16 7 N -0.89 -25.32 11.47 55.49 0.64 -24.68 16 8 Si 0.90 21.95 29.60 -169.99 -5.03 16.91 16 9 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 10 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 12 C 0.14 3.21 5.45 -4.04 -0.02 3.19 16 13 C 0.10 2.20 6.00 -4.04 -0.02 2.18 16 14 N -0.72 -13.59 5.55 -61.43 -0.34 -13.93 16 15 C 0.58 11.29 7.81 -12.59 -0.10 11.19 16 16 O -0.56 -12.36 14.80 5.25 0.08 -12.29 16 17 C -0.23 -3.65 6.29 -103.35 -0.65 -4.30 16 18 C -0.16 -2.20 10.45 -37.50 -0.39 -2.59 16 19 C 0.01 0.07 6.85 -81.87 -0.56 -0.49 16 20 C -0.08 -0.61 10.06 36.01 0.36 -0.25 16 21 N -0.44 -4.83 2.69 -107.96 -0.29 -5.12 16 22 C 0.13 0.97 5.65 -4.04 -0.02 0.95 16 23 C -0.17 -1.19 6.01 -90.63 -0.54 -1.73 16 24 C -0.17 -1.06 9.98 -26.74 -0.27 -1.32 16 25 C -0.17 -0.86 10.25 -26.74 -0.27 -1.13 16 26 C 0.10 1.43 6.89 -81.88 -0.56 0.87 16 27 C -0.09 -1.13 9.27 36.01 0.33 -0.80 16 28 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.04 0.90 6.64 -51.93 -0.34 0.55 16 30 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 31 H 0.04 0.99 8.08 -51.93 -0.42 0.58 16 32 H 0.03 0.69 7.83 -51.93 -0.41 0.28 16 33 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 34 H 0.10 2.53 5.52 -51.93 -0.29 2.25 16 35 H 0.03 0.61 7.86 -51.93 -0.41 0.20 16 36 H 0.05 1.10 6.64 -51.93 -0.34 0.76 16 37 H 0.06 1.53 8.14 -51.93 -0.42 1.11 16 38 H 0.40 6.62 7.60 -40.82 -0.31 6.31 16 39 H 0.14 1.74 7.70 -52.49 -0.40 1.34 16 40 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.06 0.38 6.94 -51.93 -0.36 0.02 16 43 H 0.09 0.55 6.90 -51.93 -0.36 0.19 16 44 H 0.09 0.60 7.22 -51.93 -0.37 0.23 16 45 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 46 H 0.10 0.54 8.03 -51.93 -0.42 0.12 16 47 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 48 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 49 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 50 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 51 H 0.06 0.56 7.38 -51.93 -0.38 0.18 16 52 H 0.10 1.50 6.44 -51.93 -0.33 1.17 16 LS Contribution 418.32 15.07 6.30 6.30 Total: -1.00 -32.65 418.32 -10.60 -43.25 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: -8.93 Total: 5.59 kcal Atomic # 6 Polarization: 1.53 SS G_CDS: -2.60 Total: -1.07 kcal Atomic # 7 Polarization: -58.29 SS G_CDS: -0.42 Total: -58.71 kcal Atomic # 8 Polarization: -12.36 SS G_CDS: 0.08 Total: -12.29 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.03 Total: 16.91 kcal Total LS contribution 6.30 Total: 6.30 kcal Total: -32.65 -10.60 -43.25 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267255472.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.580 kcal (2) G-P(sol) polarization free energy of solvation -32.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds